Search Toolkit Book for CAlnMultiWidget

#include <gui/widgets/aln_multiple/alnmulti_widget.hpp>

Inheritance diagram for CAlnMultiWidget:

Collaboration diagram for CAlnMultiWidget:

Public Types
typedef CAlnMultiModel::TNumrow	TNumrow

typedef int	TLine

typedef list< objects::CSeq_loc * >	TPSeqLocList

typedef CRangeCollection< TSeqPos >	TRangeColl

typedef vector< CConstRef< objects::CSeq_id > >	TRSeqIdVector

Public Types inherited from CGlWidgetBase
enum	{ ID_GLCHILDPANE = wxID_HIGHEST + 200 , ID_VSCROPLLBAR , ID_HSCROPLLBAR }

Public Types inherited from CEventHandler
enum	EDispatch { eDispatch_SelfOnly , eDispatch_AllHandlers , eDispatch_FirstHandler , eDispatch_Default = eDispatch_AllHandlers }
	enum controlling dispatching strategies More...

enum	EPoolName { ePool_Default = 0 , ePool_Parent , ePool_Child , ePool_Sibling , ePool_NextAvailable }
	Identifiers for standard pools. More...

typedef vector< CEventHandler * >	TListeners

typedef map< int, TListeners >	TPools

typedef list< AutoPtr< SPostRequest > >	TPostRequests

typedef std::map< CEventHandler *, int >	THandlerToCount

typedef void(*	FOnPostCallback) ()

Public Types inherited from IAlnMultiPaneParent
typedef IAlnMultiDataSource::TNumrow	TNumrow

Public Member Functions
	CAlnMultiWidget (wxWindow *parent, wxWindowID id=wxID_ANY, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=0, const wxString &name=wxT("panel"))

virtual	~CAlnMultiWidget ()

virtual void	SetDataSource (IAlnMultiDataSource p_ds, objects::CScope scope)

virtual void	CreateWidget (CAlnMultiModel *model=NULL)
	performs initialization, creates Model and Controls. More...

virtual CAlnMultiModel *	GetModel ()

virtual const CAlnMultiModel *	GetModel () const

virtual void	SetStyleCatalog (const CRowStyleCatalog *catalog)

virtual const CWidgetDisplayStyle *	GetDisplayStyle () const

virtual void	SetVisible (const vector< TNumrow > &rows, bool b_visible, bool b_invert_others=false)
	makes specified rows visible/hidden, other rows aren't affected More...

virtual void	Select (const vector< TNumrow > &rows, bool b_select, bool b_invert_others=false)

virtual IAlnMultiDataSource *	GetDataSource ()

void	OnContextMenu (wxContextMenuEvent &event)

virtual void	UpdateSortOrder ()

virtual void	UpdateOnScoringChanged ()

void	ZoomToSelection ()

void	Print (const string &filename)
	Scroll callbacks. More...

void	UpdateView ()

bool	SaveVectorImage (CPrintOptions::EOutputFormat format, string const &path, string const &file_name, bool show_header, bool simplified)

CGlWidgetBase virtual functions
virtual CGlPane &	GetPort ()
	implement these 2 functions in derived classes More...

virtual const CGlPane &	GetPort () const
	implement these 2 functions in derived classes More...

virtual void	x_SetPortLimits (void)
	updates model limits of the Master CGlPane More...

virtual CGlWidgetPane *	x_GetPane ()

virtual void	LoadSettings ()

virtual void	SaveSettings () const

IAlnMultiRenderContext implementation
virtual bool	IsRendererFocused ()
	overriding base class implementation More...

IAlnMultiPaneParent implementation
virtual const IAlnMultiDataSource *	GetDataSource () const

virtual TNumrow	GetRowNumByLine (TLine line) const

virtual int	GetLineByRowNum (TNumrow Row) const
	return -1 if "row" does not exist or is not visible More...

virtual void	OnChildResize ()

virtual void	SetScaleX (TModelUnit scale_x, const TModelPoint &point)

virtual void	ZoomRect (const TModelRect &rc)

virtual void	ZoomPoint (const TModelPoint &point, TModelUnit factor)

virtual void	Scroll (TModelUnit d_x, TModelUnit d_y)

virtual void	OnRowChanged (IAlignRow *p_row)

virtual void	OnColumnsChanged ()

CUIDataSource::IListener implementation
virtual void	OnDSChanged (CDataChangeNotifier::CUpdate &update)

CAlnMultiModel::IListener implementation
virtual void	OnScoringProgress (float progress, const string &msg)

virtual void	OnScoringFinished ()

Command Handlers
void	OnSavePdf (wxCommandEvent &evt)

void	OnEnableSavePdfCmdUpdate (wxUpdateUIEvent &evt)

void	OnSaveSvg (wxCommandEvent &evt)

void	OnEnableSaveSvgCmdUpdate (wxUpdateUIEvent &evt)

void	OnZoomSequence (wxCommandEvent &event)

void	OnZoomSelection (wxCommandEvent &event)

void	OnUpdateZoomSelection (wxUpdateUIEvent &event)

void	OnMakeSelectedRowMaster (wxCommandEvent &event)

void	OnUpdateMakeSelectedRowMaster (wxUpdateUIEvent &event)

void	OnUnsetMaster (wxCommandEvent &event)

void	OnUpdateUnsetMaster (wxUpdateUIEvent &event)

void	OnMakeConsensusRowMaster (wxCommandEvent &event)

void	OnUpdateMakeConsensusRowMaster (wxUpdateUIEvent &event)

void	OnResetSelection (wxCommandEvent &event)

void	OnMarkSelected (wxCommandEvent &event)

void	OnUnMarkSelected (wxCommandEvent &event)
	mark selected regions of selected rows More...

void	OnUpdateMarkSelected (wxUpdateUIEvent &event)
	unmark selected regions of selected rows More...

void	OnUnMarkAll (wxCommandEvent &event)

void	OnHideSelected (wxCommandEvent &event)

void	OnUnhideSelected (wxCommandEvent &event)
	hide selected rows More...

void	OnUpdateUnhideSelected (wxUpdateUIEvent &event)
	hide selected rows More...

void	OnHasSelected (wxUpdateUIEvent &event)

void	OnShowOnlySelected (wxCommandEvent &event)

void	OnShowAll (wxCommandEvent &event)
	hide rows that are not selected More...

void	OnMoveSelectedUp (wxCommandEvent &event)
	show all hidden rows More...

void	OnSettings (wxCommandEvent &event)

void	OnUpdateSettings (wxUpdateUIEvent &event)

Command handler for Scoring methods management
void	OnShowMethodDlg (wxCommandEvent &event)

void	OnUpdateShowMethodDlg (wxUpdateUIEvent &event)

void	OnDisableScoring (wxCommandEvent &event)

void	OnUpdateDisableScoring (wxUpdateUIEvent &event)

void	OnMethodProperties (wxCommandEvent &event)

void	OnUpdateMethodProperties (wxUpdateUIEvent &event)

void	OnScoringMethod (wxCommandEvent &event)

void	OnUpdateScoringMethod (wxUpdateUIEvent &event)

void	OnSetAsDefaultMethod (wxCommandEvent &event)

Selection handling
void	GetSelectedIds (TRSeqIdVector &ids) const

void	SetSelectedIds (const TRSeqIdVector &ids, objects::CScope &scope)

void	GetSelectedRows (vector< TNumrow > &rows)

const TRangeColl &	GetSelection (void) const

void	SetSelection (const TRangeColl &coll)

void	GetMarks (TPSeqLocList &ls_locs) const

void	GetObjectSelection (TConstObjects &objs) const

bool	HasSelectedObjects () const

Public Member Functions inherited from CGlWidgetBase
	CGlWidgetBase (wxWindow *parent, wxWindowID id=wxID_ANY, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxTAB_TRAVERSAL, const wxString &name=wxT("panel"))
	class CGlWidgetBase More...

virtual	~CGlWidgetBase ()

virtual void	Create ()
	creates controls and performs basic initialization More...

virtual void	ZoomPoint (const TModelPoint &point, TModelUnit factor, CGlPane::EZoomOptions=CGlPane::fZoomXY)

virtual void	NotifyVisibleRangeChanged ()

void	OnAllEvents (CViewEvent::TEventObject evt)

virtual void	SetRegistryPath (const string &reg_path)

void	OnSize (wxSizeEvent &event)

void	OnScroll (wxScrollEvent &event)

void	OnZoomIn (wxCommandEvent &event)

void	OnZoomInX (wxCommandEvent &event)

void	OnZoomInY (wxCommandEvent &event)

void	OnZoomInMouse (wxCommandEvent &event)

void	OnZoomOut (wxCommandEvent &event)

void	OnZoomOutX (wxCommandEvent &event)

void	OnZoomOutY (wxCommandEvent &event)

void	OnZoomOutMouse (wxCommandEvent &event)

void	OnZoomAll (wxCommandEvent &event)

void	OnZoomAllX (wxCommandEvent &event)

void	OnZoomAllY (wxCommandEvent &event)

void	OnEnableCmdUpdate (wxUpdateUIEvent &event)

Public Member Functions inherited from CEventHandler
	CEventHandler ()
	CEventHandler. More...

virtual	~CEventHandler ()

virtual void	AddListener (CEventHandler *listener, int pool_name=ePool_Default)
	Add a listener. More...

virtual void	RemoveListener (CEventHandler *listener)
	Remove a listener. More...

virtual void	RemoveAllListeners (void)

virtual bool	HasListener (CEventHandler *listener, int pool_name=ePool_Default) const
	returns "true" if the given listener belongs to the specified pool More...

virtual const TListeners *	GetListeners (int pool_name=ePool_Default) const
	returns a set of listeners fro the specified pool More...

virtual bool	OnEvent (CEvent *evt)
	Processes en event. Returns "true" if event has been processed. More...

virtual bool	Dispatch (CEvent *evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default)
	Dispatches an event to the listeners (but does not handle it). More...

virtual bool	Send (CEvent *evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default)
	Sends an event synchronously. More...

virtual bool	Send (CEvent *evt, int pool_name)

void	Post (CRef< CEvent > evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default)
	Handles an event asynchronously (process and/or dispatch). More...

Public Member Functions inherited from IRegSettings
virtual	~IRegSettings ()

Public Member Functions inherited from IAlnMultiPaneParent
virtual	~IAlnMultiPaneParent ()

Public Member Functions inherited from CDataChangeNotifier::IListener
virtual	~IListener ()

Public Member Functions inherited from CScoreCache::IListener
virtual	~IListener ()

Static Public Member Functions
static void	RegisterCommands (CUICommandRegistry &cmd_reg, wxFileArtProvider &provider)
	class CAlnMultiWidget More...

Static Public Member Functions inherited from CEventHandler
static bool	HandlePostRequest ()

static void	ClearPostQueue ()
	erases all events from the queue More...

static void	DestroyPostQueue ()

Protected Types
typedef map< int, string >	TCmdToName

Protected Member Functions
void	x_CreatePane (void)
	factory method creating master pane, called form x_CreateControls() More...

virtual CAlnMultiModel *	x_CreateModel ()
	factory method creating and initializing a default model More...

virtual void	x_AdjustVisible (bool b_reset)

virtual void	x_RedrawControls (void)

virtual void	x_UpdateStyleColumns ()

void	x_ZoomToRange (TSeqPos from, TSeqPos to)

void	x_MakeVisibleHorz (TSeqPos pos)

void	x_MakeVisibleHorz (TSeqPos from, TSeqPos to)

virtual wxMenu *	x_CreatePopupMenu ()

virtual string	x_GetCurrentMethodName () const

virtual void	x_SetScoringMethod (const string &method_name, bool save)

virtual void	x_CreateScoringMethodsMenu (wxMenu &color_menu)

virtual string *	x_GetDefMethodName ()

virtual string	x_GetScoringMRUListName ()

void	x_GetMatchingHiddenRows (vector< TNumrow > &rows)

void	x_OnSaveVectorImage (CPrintOptions::EOutputFormat format)

Update handlers
Functions in this group are called by the widget when something changes. Each functions performs minimal set of operations needed to keep widget up-to-date.
virtual void	x_UpdateOnDataChanged (bool b_reset=true)
	Update handlers. More...

virtual void	x_UpdateOnRowHChanged (void)

virtual void	x_UpdateOnSwitchMaster (TNumrow NewMasterRow)

virtual void	x_UpdateOnZoom (void)

virtual void	x_UpdateOnStylesChanged (void)

virtual void	x_OnResize (void)

Protected Member Functions inherited from CGlWidgetBase
virtual bool	DoPopupMenu (wxMenu *menu, int x, int y)
	Override to record when (blocking) popup menu is active. More...

virtual void	x_CreateControls (void)
	creates Pane, Scrollbars and other child widgets, called from Create() More...

virtual void	x_Update ()
	Update handlers. More...

virtual void	x_SaveStates ()

virtual void	x_ZoomIn (int options)
	Zoom functions. More...

virtual void	x_ZoomOut (int options)

virtual void	x_ZoomAll (int options)

virtual void	x_UpdateOnHScroll ()

virtual void	x_UpdateOnVScroll ()

virtual void	x_UpdateScrollbars ()

virtual void	x_OnScrollX (int pos)

virtual void	x_OnScrollY (int pos)

virtual void	x_ShowDecoratedPopupMenu (wxMenu *menu)

Protected Member Functions inherited from CEventHandler
virtual const SEvtMap *	GetEventMap () const

void	x_DeclareDead ()
	Removes itself unavailable for async event delivery. More...

void	x_AddListenerToPool (CEventHandler *listener, int pool_name)

Protected Attributes
IAlnMultiDataSource *	m_DataSource

CAlnMultiModel *	m_Model
	source of alignment data More...

CAlnMultiPane *	m_AlignPane
	representation of alignment data More...

TCmdToName	m_CmdToName
	widget rendering data and handling events More...

Protected Attributes inherited from CGlWidgetBase
string	m_RegPath
	path to the widget's settings in GUI Registry More...

TModelPoint	m_PopupPoint

Protected Attributes inherited from CEventHandler
TPools	m_Pools

Additional Inherited Members
Static Protected Attributes inherited from CEventHandler
static const SEvtMap	sm_EvtMap

Detailed Description

class CAlnMultiWidget

CAlnMultiWidget is a reusable component for visual presntations of multiple alignments. CAlnMultiWidget works as Mediator to organize interaction of its internal components and to support communication with external components. Data Source is an external component that serves as a source of alignment data. CAlnMultiWidget builds a visual Model object around provided Data Source and uses CAlnMultiPane component to represent this model. CAlnMultiWidget provides API for external components allowing for executing commands and retrieving state information such as selections.

Definition at line 96 of file alnmulti_widget.hpp.

Member Typedef Documentation

◆ TCmdToName

typedef map<int, string> CAlnMultiWidget::TCmdToName

protected

Definition at line 312 of file alnmulti_widget.hpp.

◆ TLine

typedef int CAlnMultiWidget::TLine

Definition at line 105 of file alnmulti_widget.hpp.

◆ TNumrow

typedef CAlnMultiModel::TNumrow CAlnMultiWidget::TNumrow

Definition at line 104 of file alnmulti_widget.hpp.

◆ TPSeqLocList

typedef list<objects::CSeq_loc*> CAlnMultiWidget::TPSeqLocList

Definition at line 106 of file alnmulti_widget.hpp.

◆ TRangeColl

typedef CRangeCollection<TSeqPos> CAlnMultiWidget::TRangeColl

Definition at line 107 of file alnmulti_widget.hpp.

◆ TRSeqIdVector

typedef vector<CConstRef<objects::CSeq_id> > CAlnMultiWidget::TRSeqIdVector

Definition at line 108 of file alnmulti_widget.hpp.

Constructor & Destructor Documentation

◆ CAlnMultiWidget()

CAlnMultiWidget::CAlnMultiWidget	(	wxWindow *	parent,
		wxWindowID	id = `wxID_ANY`,
		const wxPoint &	pos = `wxDefaultPosition`,
		const wxSize &	size = `wxDefaultSize`,
		long	style = `0`,
		const wxString &	name = `wxT("panel")`
	)

Definition at line 97 of file alnmulti_widget.cpp.

◆ ~CAlnMultiWidget()

CAlnMultiWidget::~CAlnMultiWidget ( )

virtual

Definition at line 144 of file alnmulti_widget.cpp.

References CAlnMultiModel::ClearRows(), m_AlignPane, m_Model, NULL, CEventHandler::RemoveListener(), and CAlnMultiModel::SetListener().

Member Function Documentation

◆ CreateWidget()

void CAlnMultiWidget::CreateWidget ( CAlnMultiModel * model = NULL )

virtual

performs initialization, creates Model and Controls.

Call Create() right after constructing CAlnMultiWidget; assumes ownership of the model. If model == NULL, creates a default model

Definition at line 111 of file alnmulti_widget.cpp.

References CAlnMultiPane::GetAlignVPHeight(), CAlnMultiPane::GetAlignVPWidth(), GetPort(), m_AlignPane, m_Model, NULL, CAlnMultiModel::SetListener(), CAlnMultiModel::SetPortLimits(), CGlRect< T >::SetSize(), CGlPane::SetViewport(), and CGlWidgetBase::x_CreateControls().

Referenced by CAlignMultipleDemoDlg::CreateControls(), CMultiAlignView::CreateViewWindow(), and CUpdateSeqPanel::x_CreateAlnMultiWidget().

◆ GetDataSource() [1/2]

CAlnMultiWidget::OnUpdateMethodProperties CAlnMultiWidget::OnUpdateScoringMethod IAlnMultiDataSource * CAlnMultiWidget::GetDataSource ( void )

virtual

Implements IAlnMultiPaneParent.

Definition at line 210 of file alnmulti_widget.cpp.

Referenced by CwxExportAlnmultiImgDlg::Create(), GetMarks(), GetSelectedIds(), GetSelectedRows(), OnMakeConsensusRowMaster(), OnUpdateShowMethodDlg(), SetSelectedIds(), x_GetMatchingHiddenRows(), x_UpdateOnDataChanged(), x_UpdateOnStylesChanged(), and x_UpdateOnSwitchMaster().

◆ GetDataSource() [2/2]

const IAlnMultiDataSource * CAlnMultiWidget::GetDataSource ( void ) const

virtual

Implements IAlnMultiPaneParent.

Definition at line 216 of file alnmulti_widget.cpp.

References m_DataSource.

◆ GetDisplayStyle()

const CWidgetDisplayStyle * CAlnMultiWidget::GetDisplayStyle ( ) const

virtual

Definition at line 262 of file alnmulti_widget.cpp.

References CAlnMultiModel::GetDisplayStyle(), and m_Model.

Referenced by CAlignMultipleDemoDlg::CreateControls(), CMultiAlignView::CreateViewWindow(), OnZoomSequence(), and CUpdateSeqPanel::x_CreateAlnMultiWidget().

◆ GetLineByRowNum()

int CAlnMultiWidget::GetLineByRowNum ( TNumrow Row ) const

virtual

return -1 if "row" does not exist or is not visible

Implements IAlnMultiPaneParent.

Definition at line 366 of file alnmulti_widget.cpp.

References CAlnMultiModel::GetLineByRowNum(), m_Model, and row.

◆ GetMarks()

void CAlnMultiWidget::GetMarks ( TPSeqLocList & ls_locs ) const

Definition at line 943 of file alnmulti_widget.cpp.

References CPacked_seqint::AddInterval(), GetDataSource(), CAlnMultiPane::GetMarks(), IAlnMultiDataSource::GetSeqId(), ITERATE, m_AlignPane, row, and CSeq_loc::SetPacked_int().

◆ GetModel() [1/2]

CAlnMultiModel * CAlnMultiWidget::GetModel ( )

virtual

Definition at line 346 of file alnmulti_widget.cpp.

References m_Model.

Referenced by GetSelectedIds(), GetSelectedRows(), OnUpdateUnhideSelected(), CAlnMultiPane::RenderVectorGraphics(), CUpdateSeqPanel::SaveSettings(), SetSelectedIds(), x_GetMatchingHiddenRows(), and CUpdateSeqPanel::x_InitAlnMultiWidgetAndUpdateTypes().

◆ GetModel() [2/2]

const CAlnMultiModel * CAlnMultiWidget::GetModel ( ) const

virtual

Definition at line 352 of file alnmulti_widget.cpp.

References m_Model.

◆ GetObjectSelection()

void CAlnMultiWidget::GetObjectSelection ( TConstObjects & objs ) const

Definition at line 1615 of file alnmulti_widget.cpp.

References _ASSERT, CAlnMultiPane::GetObjectSelection(), and m_AlignPane.

◆ GetPort() [1/2]

CGlPane & CAlnMultiWidget::GetPort ( )

virtual

implement these 2 functions in derived classes

Implements CGlWidgetBase.

Definition at line 302 of file alnmulti_widget.cpp.

References CAlnMultiModel::GetAlignPort(), and m_Model.

Referenced by CreateWidget(), CAlnMultiPane::GetViewportRect(), OnZoomSequence(), SaveVectorImage(), Scroll(), SetScaleX(), x_AdjustVisible(), x_MakeVisibleHorz(), x_OnResize(), x_UpdateOnSwitchMaster(), x_ZoomToRange(), and ZoomPoint().

◆ GetPort() [2/2]

const CGlPane & CAlnMultiWidget::GetPort ( ) const

virtual

implement these 2 functions in derived classes

Implements CGlWidgetBase.

Definition at line 308 of file alnmulti_widget.cpp.

References CAlnMultiModel::GetAlignPort(), and m_Model.

◆ GetRowNumByLine()

CAlnMultiWidget::TNumrow CAlnMultiWidget::GetRowNumByLine ( TLine line ) const

virtual

Implements IAlnMultiPaneParent.

Definition at line 358 of file alnmulti_widget.cpp.

References CAlnMultiModel::GetRowByLine(), IAlignRow::GetRowNum(), and m_Model.

Referenced by GetSelectedIds(), GetSelectedRows(), and OnMakeSelectedRowMaster().

◆ GetSelectedIds()

void CAlnMultiWidget::GetSelectedIds ( TRSeqIdVector & ids ) const

Definition at line 656 of file alnmulti_widget.cpp.

References _ASSERT, GetDataSource(), GetModel(), GetRowNumByLine(), IAlnMultiDataSource::GetSeqId(), ITERATE, row, and CSelListModelImpl< Item >::SLM_GetSelectedIndices().

◆ GetSelectedRows()

void CAlnMultiWidget::GetSelectedRows ( vector< TNumrow > & rows )

Definition at line 673 of file alnmulti_widget.cpp.

References IAlignRow::fItemSelected, GetDataSource(), CAlnMultiModel::GetMasterRow(), GetModel(), IAlignRow::GetRowNum(), GetRowNumByLine(), IAlignRow::GetRowState(), ITERATE, m_Model, row, and CSelListModelImpl< Item >::SLM_GetSelectedIndices().

Referenced by CMultiAlignView::GetSelection(), and OnUpdateUnhideSelected().

◆ GetSelection()

const CAlnMultiWidget::TRangeColl & CAlnMultiWidget::GetSelection ( void ) const

Definition at line 717 of file alnmulti_widget.cpp.

References CAlnMultiPane::GetSelection(), and m_AlignPane.

Referenced by CMultiAlignView::x_GetSeqRangeSelection().

◆ HasSelectedObjects()

bool CAlnMultiWidget::HasSelectedObjects ( ) const

Definition at line 1609 of file alnmulti_widget.cpp.

References _ASSERT, CAlnMultiPane::HasSelectedObjects(), and m_AlignPane.

◆ IsRendererFocused()

bool CAlnMultiWidget::IsRendererFocused ( )

virtual

overriding base class implementation

Definition at line 495 of file alnmulti_widget.cpp.

References m_AlignPane.

◆ LoadSettings()

void CAlnMultiWidget::LoadSettings ( )

virtual

Reimplemented from CGlWidgetBase.

Definition at line 268 of file alnmulti_widget.cpp.

References CAlnMultiModel::GetDisplayStyle(), CGuiRegistry::GetInstance(), CGuiRegistry::GetReadView(), CWidgetDisplayStyle::LoadSettings(), m_Model, CGlWidgetBase::m_RegPath, and x_UpdateOnStylesChanged().

Referenced by CMultiAlignView::LoadSettings().

◆ OnChildResize()

void CAlnMultiWidget::OnChildResize ( )

virtual

Implements IAlnMultiPaneParent.

Definition at line 372 of file alnmulti_widget.cpp.

References x_OnResize().

◆ OnColumnsChanged()

void CAlnMultiWidget::OnColumnsChanged ( )

virtual

Implements IAlnMultiPaneParent.

Definition at line 439 of file alnmulti_widget.cpp.

References SaveSettings(), and x_UpdateStyleColumns().

◆ OnContextMenu()

void CAlnMultiWidget::OnContextMenu ( wxContextMenuEvent & event )

Definition at line 420 of file alnmulti_widget.cpp.

References eHorz, eVert, m_AlignPane, CGlWidgetBase::m_PopupPoint, CGlPoint< T >::m_X, CGlPoint< T >::m_Y, CAlnMultiPane::SHH_GetModelByWindow(), x_CreatePopupMenu(), and CGlWidgetBase::x_ShowDecoratedPopupMenu().

◆ OnDisableScoring()

void CAlnMultiWidget::OnDisableScoring ( wxCommandEvent & event )

Definition at line 1312 of file alnmulti_widget.cpp.

References x_SetScoringMethod().

◆ OnDSChanged()

void CAlnMultiWidget::OnDSChanged ( CDataChangeNotifier::CUpdate & update )

virtual

◆ OnEnableSavePdfCmdUpdate()

void CAlnMultiWidget::OnEnableSavePdfCmdUpdate ( wxUpdateUIEvent & evt )

Definition at line 510 of file alnmulti_widget.cpp.

◆ OnEnableSaveSvgCmdUpdate()

void CAlnMultiWidget::OnEnableSaveSvgCmdUpdate ( wxUpdateUIEvent & evt )

Definition at line 520 of file alnmulti_widget.cpp.

◆ OnHasSelected()

void CAlnMultiWidget::OnHasSelected ( wxUpdateUIEvent & event )

Definition at line 757 of file alnmulti_widget.cpp.

References m_Model, and CSelListModelImpl< Item >::SLM_GetSelectedCount().

◆ OnHideSelected()

void CAlnMultiWidget::OnHideSelected ( wxCommandEvent & event )

Definition at line 770 of file alnmulti_widget.cpp.

References CAlnMultiModel::GetSelectedRows(), m_Model, SetVisible(), and CAlnMultiModel::SLM_SelectAll().

◆ OnMakeConsensusRowMaster()

void CAlnMultiWidget::OnMakeConsensusRowMaster ( wxCommandEvent & event )

Definition at line 621 of file alnmulti_widget.cpp.

References IAlnMultiDataSource::GetConsensusRow(), GetDataSource(), and x_UpdateOnSwitchMaster().

◆ OnMakeSelectedRowMaster()

void CAlnMultiWidget::OnMakeSelectedRowMaster ( wxCommandEvent & event )

Definition at line 595 of file alnmulti_widget.cpp.

References eDialog_Modal, eDialog_Ok, eIcon_Exclamation, GetRowNumByLine(), m_Model, msg(), NcbiMessageBox(), CSelListModelImpl< Item >::SLM_GetSelectedCount(), CSelListModelImpl< Item >::SLM_GetSelectedIndices(), and x_UpdateOnSwitchMaster().

◆ OnMarkSelected()

void CAlnMultiWidget::OnMarkSelected ( wxCommandEvent & event )

Definition at line 729 of file alnmulti_widget.cpp.

References C, CAlnMultiPane::GetSelection(), m_AlignPane, and CAlnMultiPane::MarkSelectedRows().

◆ OnMethodProperties()

void CAlnMultiWidget::OnMethodProperties ( wxCommandEvent & event )

Definition at line 1285 of file alnmulti_widget.cpp.

References CAlnMultiModel::GetCurrentMethod(), m_Model, UpdateOnScoringChanged(), CAlnMultiModel::UpdateOnScoringChanged(), and wxT.

◆ OnMoveSelectedUp()

void CAlnMultiWidget::OnMoveSelectedUp ( wxCommandEvent & event )

show all hidden rows

Definition at line 859 of file alnmulti_widget.cpp.

References CAlnMultiModel::GetSelectedRows(), m_Model, CAlnMultiModel::SetRowOrder(), and x_RedrawControls().

◆ OnResetSelection()

void CAlnMultiWidget::OnResetSelection ( wxCommandEvent & event )

Definition at line 650 of file alnmulti_widget.cpp.

References m_AlignPane, and CAlnMultiPane::ResetSelection().

◆ OnRowChanged()

void CAlnMultiWidget::OnRowChanged ( IAlignRow * p_row )

virtual

Implements IAlnMultiPaneParent.

Definition at line 406 of file alnmulti_widget.cpp.

References CAlnMultiModel::GetMasterRow(), m_AlignPane, m_Model, CAlnMultiPane::Update(), x_AdjustVisible(), x_RedrawControls(), x_UpdateOnRowHChanged(), and CGlWidgetBase::x_UpdateScrollbars().

◆ OnSavePdf()

void CAlnMultiWidget::OnSavePdf ( wxCommandEvent & evt )

Definition at line 505 of file alnmulti_widget.cpp.

References CPrintOptions::ePdf, and x_OnSaveVectorImage().

◆ OnSaveSvg()

void CAlnMultiWidget::OnSaveSvg ( wxCommandEvent & evt )

Definition at line 515 of file alnmulti_widget.cpp.

References CPrintOptions::eSvg, and x_OnSaveVectorImage().

◆ OnScoringFinished()

void CAlnMultiWidget::OnScoringFinished ( )

virtual

Implements CScoreCache::IListener.

Definition at line 488 of file alnmulti_widget.cpp.

References CAlnMultiPane::HideProgressPanel(), and m_AlignPane.

◆ OnScoringMethod()

void CAlnMultiWidget::OnScoringMethod ( wxCommandEvent & event )

Definition at line 1388 of file alnmulti_widget.cpp.

References map_checker< Container >::clear(), cmd, m_CmdToName, and x_SetScoringMethod().

◆ OnScoringProgress()

void CAlnMultiWidget::OnScoringProgress	(	float	progress,
		const string &	msg
	)

virtual

Implements CScoreCache::IListener.

Definition at line 482 of file alnmulti_widget.cpp.

References m_AlignPane, msg(), and CAlnMultiPane::ShowProgressPanel().

◆ OnSetAsDefaultMethod()

void CAlnMultiWidget::OnSetAsDefaultMethod ( wxCommandEvent & event )

Definition at line 1409 of file alnmulti_widget.cpp.

References _ASSERT, SaveSettings(), x_GetCurrentMethodName(), and x_GetDefMethodName().

◆ OnSettings()

void CAlnMultiWidget::OnSettings ( wxCommandEvent & event )

Definition at line 892 of file alnmulti_widget.cpp.

References CAlnMultiRenderer::GetColumn(), CAlnMultiRenderer::GetColumnsCount(), CAlnMultiModel::GetDisplayStyle(), CAlnMultiPane::GetRenderer(), i, m_AlignPane, CWidgetDisplayStyle::m_Columns, m_Model, IAlnMultiHeaderContext::SColumn::m_Name, CGlWidgetBase::m_RegPath, IAlnMultiHeaderContext::SColumn::m_Visible, IAlnMultiHeaderContext::SColumn::m_Width, SaveSettings(), CAlnPropertiesDlg::SetParams(), CDialog::SetRegistryPath(), x_UpdateOnStylesChanged(), and x_UpdateStyleColumns().

◆ OnShowAll()

void CAlnMultiWidget::OnShowAll ( wxCommandEvent & event )

hide rows that are not selected

Definition at line 849 of file alnmulti_widget.cpp.

References m_Model, CAlnMultiModel::ShowAll(), x_AdjustVisible(), x_RedrawControls(), and CGlWidgetBase::x_UpdateScrollbars().

◆ OnShowMethodDlg()

void CAlnMultiWidget::OnShowMethodDlg ( wxCommandEvent & event )

Definition at line 1254 of file alnmulti_widget.cpp.

References _ASSERT, CScoringMethodsDlg::Create(), IAlnExplorer::fInvalid, IAlnMultiDataSource::GetAlignType(), CScoringMethodsDlg::GetSelectedMethod(), m_DataSource, CScoringMethodsDlg::Setup(), ToStdString(), x_GetCurrentMethodName(), and x_SetScoringMethod().

◆ OnShowOnlySelected()

void CAlnMultiWidget::OnShowOnlySelected ( wxCommandEvent & event )

Definition at line 840 of file alnmulti_widget.cpp.

References CAlnMultiModel::GetSelectedRows(), m_Model, and SetVisible().

◆ OnUnhideSelected()

void CAlnMultiWidget::OnUnhideSelected ( wxCommandEvent & event )

hide selected rows

Definition at line 812 of file alnmulti_widget.cpp.

References SetVisible(), and x_GetMatchingHiddenRows().

◆ OnUnMarkAll()

void CAlnMultiWidget::OnUnMarkAll ( wxCommandEvent & event )

Definition at line 762 of file alnmulti_widget.cpp.

References m_AlignPane, and CAlnMultiPane::UnMarkAll().

◆ OnUnMarkSelected()

void CAlnMultiWidget::OnUnMarkSelected ( wxCommandEvent & event )

mark selected regions of selected rows

Definition at line 738 of file alnmulti_widget.cpp.

References C, CAlnMultiPane::GetSelection(), m_AlignPane, and CAlnMultiPane::MarkSelectedRows().

◆ OnUnsetMaster()

void CAlnMultiWidget::OnUnsetMaster ( wxCommandEvent & event )

Definition at line 637 of file alnmulti_widget.cpp.

References x_UpdateOnSwitchMaster().

◆ OnUpdateDisableScoring()

void CAlnMultiWidget::OnUpdateDisableScoring ( wxUpdateUIEvent & event )

Definition at line 1318 of file alnmulti_widget.cpp.

References CAlnMultiModel::GetCurrentMethod(), m_Model, and NULL.

◆ OnUpdateMakeConsensusRowMaster()

void CAlnMultiWidget::OnUpdateMakeConsensusRowMaster ( wxUpdateUIEvent & event )

Definition at line 630 of file alnmulti_widget.cpp.

References CAlnMultiModel::CanChangeMasterRow(), and m_Model.

◆ OnUpdateMakeSelectedRowMaster()

void CAlnMultiWidget::OnUpdateMakeSelectedRowMaster ( wxUpdateUIEvent & event )

Definition at line 615 of file alnmulti_widget.cpp.

References CAlnMultiModel::CanChangeMasterRow(), and m_Model.

◆ OnUpdateMarkSelected()

void CAlnMultiWidget::OnUpdateMarkSelected ( wxUpdateUIEvent & event )

unmark selected regions of selected rows

Definition at line 747 of file alnmulti_widget.cpp.

References C, CAlnMultiPane::GetSelection(), m_AlignPane, m_Model, and CSelListModelImpl< Item >::SLM_GetSelectedCount().

◆ OnUpdateMethodProperties()

void CAlnMultiWidget::OnUpdateMethodProperties ( wxUpdateUIEvent & event )

Definition at line 1301 of file alnmulti_widget.cpp.

References CAlnMultiModel::GetCurrentMethod(), IUIToolWithGUI::HasPropertiesPanel(), and m_Model.

◆ OnUpdateScoringMethod()

void CAlnMultiWidget::OnUpdateScoringMethod ( wxUpdateUIEvent & event )

Definition at line 1398 of file alnmulti_widget.cpp.

References cmd, m_CmdToName, and x_GetCurrentMethodName().

◆ OnUpdateSettings()

void CAlnMultiWidget::OnUpdateSettings ( wxUpdateUIEvent & event )

Definition at line 921 of file alnmulti_widget.cpp.

◆ OnUpdateShowMethodDlg()

void CAlnMultiWidget::OnUpdateShowMethodDlg ( wxUpdateUIEvent & event )

Definition at line 1274 of file alnmulti_widget.cpp.

References IAlnExplorer::fInvalid, IAlnMultiDataSource::GetAlignType(), GetDataSource(), and m_DataSource.

◆ OnUpdateUnhideSelected()

void CAlnMultiWidget::OnUpdateUnhideSelected ( wxUpdateUIEvent & event )

hide selected rows

Definition at line 820 of file alnmulti_widget.cpp.

References IAlignRow::eDescr, IAlignRow::GetColumnText(), GetModel(), CAlnMultiModel::GetRow(), GetSelectedRows(), NStr::NumericToString(), text(), ToWxString(), and x_GetMatchingHiddenRows().

◆ OnUpdateUnsetMaster()

void CAlnMultiWidget::OnUpdateUnsetMaster ( wxUpdateUIEvent & event )

Definition at line 643 of file alnmulti_widget.cpp.

References CAlnMultiModel::CanChangeMasterRow(), CAlnMultiModel::GetMasterRow(), and m_Model.

◆ OnUpdateZoomSelection()

void CAlnMultiWidget::OnUpdateZoomSelection ( wxUpdateUIEvent & event )

Definition at line 548 of file alnmulti_widget.cpp.

References CAlnMultiPane::GetSelectionLimits(), m_AlignPane, and COpenRange< Position >::NotEmpty().

◆ OnZoomSelection()

void CAlnMultiWidget::OnZoomSelection ( wxCommandEvent & event )

Definition at line 533 of file alnmulti_widget.cpp.

References ZoomToSelection().

Referenced by CUpdateSeqPanel::OnZoomToSelection().

◆ OnZoomSequence()

void CAlnMultiWidget::OnZoomSequence ( wxCommandEvent & event )

Definition at line 525 of file alnmulti_widget.cpp.

References IGlFont::eMetric_MaxCharWidth, GetDisplayStyle(), CGlTextureFont::GetMetric(), GetPort(), CWidgetDisplayStyle::m_SeqFont, CGlPane::SetScale(), and x_UpdateOnZoom().

Referenced by CUpdateSeqPanel::OnZoomToSequence().

◆ Print()

void CAlnMultiWidget::Print ( const string & filename )

Scroll callbacks.

Definition at line 1477 of file alnmulti_widget.cpp.

◆ RegisterCommands()

void CAlnMultiWidget::RegisterCommands	(	CUICommandRegistry &	cmd_reg,
		wxFileArtProvider &	provider
	)

static

class CAlnMultiWidget

Definition at line 69 of file alnmulti_widget.cpp.

References eCmdHideSelected, eCmdMarkSelected, eCmdMoveSelectedUp, eCmdRebuildAlignment, eCmdSetSelMaster, eCmdShowAll, eCmdShowOnlySelected, eCmdUnhideSelected, eCmdUnMarkAll, eCmdUnMarkSelected, eCmdUnsetMaster, CUICommandRegistry::RegisterCommand(), and WidgetsData_RegisterCommands().

Referenced by CAlignMultipleDemoDlg::CreateControls(), and CMultiAlignViewFactory::RegisterCommands().

◆ SaveSettings()

void CAlnMultiWidget::SaveSettings ( ) const

virtual

Reimplemented from CGlWidgetBase.

Definition at line 283 of file alnmulti_widget.cpp.

References IAlnExplorer::fInvalid, IAlnMultiDataSource::GetAlignType(), CAlnMultiModel::GetDisplayStyle(), CGuiRegistry::GetInstance(), CAlnMultiModel::GetNumRows(), CGuiRegistry::GetWriteView(), m_DataSource, m_Model, CGlWidgetBase::m_RegPath, and CWidgetDisplayStyle::SaveSettings().

Referenced by OnColumnsChanged(), OnSetAsDefaultMethod(), OnSettings(), CMultiAlignView::SaveSettings(), and x_SetScoringMethod().

◆ SaveVectorImage()

bool CAlnMultiWidget::SaveVectorImage	(	CPrintOptions::EOutputFormat	format,
		string const &	path,
		string const &	file_name,
		bool	show_header,
		bool	simplified
	)

Definition at line 1622 of file alnmulti_widget.cpp.

References CImageGrabberFactory::CreateImageGrabber(), IImageGrabber::eFileError, IImageGrabber::eOpenGLError, IImageGrabber::eSuccess, file_name, format, IAlnMultiRendererContext::fShownElement_Header, IAlnMultiRendererContext::fShownElement_MasterRow, IAlnMultiRendererContext::fShownElement_Ruler, CAlnMultiModel::GetDisplayStyle(), CPrintOptions::GetFileExtension(), CGlTextureFont::GetFontDescender(), CAlnMultiRenderer::GetHeaderAreaHeight(), CAlnMultiRenderer::GetMasterAreaHeight(), CGlPane::GetModelLimitsRect(), GetPort(), CAlnMultiRenderer::GetRect(), CAlnMultiPane::GetRenderer(), CAlnMultiRenderer::GetRulerAreaHeight(), CAlnMultiModel::GetShownElements(), CGlPane::GetViewport(), CGlPane::GetVisibleRect(), CGlRect< T >::Height(), m_AlignPane, m_Model, CWidgetDisplayStyle::m_TextFont, CAlnMultiRenderer::Resize(), CGlTextureFont::SetFontSize(), CAlnMultiModel::SetShownElements(), IImageGrabber::SetTitleHeight(), CGlRect< T >::SetVert(), CGlPane::SetViewport(), CGlPane::SetVisibleRect(), CGlTextureFont::TextHeight(), CGlRect< T >::Width(), and wxT.

Referenced by CwxExportAlnmultiImgDlg::OnSaveClick().

◆ Scroll()

void CAlnMultiWidget::Scroll	(	TModelUnit	d_x,
		TModelUnit	d_y
	)

virtual

Implements IAlnMultiPaneParent.

Definition at line 399 of file alnmulti_widget.cpp.

References GetPort(), CGlPane::Scroll(), and x_UpdateOnZoom().

◆ Select()

void CAlnMultiWidget::Select	(	const vector< TNumrow > &	rows,
		bool	b_select,
		bool	b_invert_others = `false`
	)

virtual

Definition at line 234 of file alnmulti_widget.cpp.

References CAlnMultiModel::GetLineByRowNum(), i, m_Model, CSelListModelImpl< Item >::SLM_SelectItems(), and x_RedrawControls().

Referenced by SetSelectedIds(), and CMultiAlignView::x_OnSetSelection().

◆ SetDataSource()

void CAlnMultiWidget::SetDataSource	(	IAlnMultiDataSource *	p_ds,
		objects::CScope *	scope
	)

virtual

◆ SetScaleX()

void CAlnMultiWidget::SetScaleX	(	TModelUnit	scale_x,
		const TModelPoint &	point
	)

virtual

Implements IAlnMultiPaneParent.

Definition at line 378 of file alnmulti_widget.cpp.

References GetPort(), CGlPane::SetScaleRefPoint(), and x_UpdateOnZoom().

◆ SetSelectedIds()

void CAlnMultiWidget::SetSelectedIds	(	const TRSeqIdVector &	ids,
		objects::CScope &	scope
	)

Definition at line 691 of file alnmulti_widget.cpp.

References IAlignRow::fItemHidden, GetDataSource(), GetModel(), IAlnMultiDataSource::GetNumRows(), IAlnMultiDataSource::GetSeqId(), ITERATE, CSeqUtils::Match(), row, and Select().

◆ SetSelection()

void CAlnMultiWidget::SetSelection ( const TRangeColl & coll )

Definition at line 723 of file alnmulti_widget.cpp.

References m_AlignPane, and CAlnMultiPane::SetSelection().

Referenced by CMultiAlignView::x_OnSetSelection().

◆ SetStyleCatalog()

void CAlnMultiWidget::SetStyleCatalog ( const CRowStyleCatalog * catalog )

virtual

Definition at line 255 of file alnmulti_widget.cpp.

References _ASSERT, catalog, m_Model, and CAlnMultiModel::SetStyleCatalog().

Referenced by CAlignMultipleDemoDlg::CreateControls(), CMultiAlignView::CreateViewWindow(), and CUpdateSeqPanel::x_CreateAlnMultiWidget().

◆ SetVisible()

void CAlnMultiWidget::SetVisible	(	const vector< TNumrow > &	rows,
		bool	b_visible,
		bool	b_invert_others = `false`
	)

virtual

makes specified rows visible/hidden, other rows aren't affected

changes visibility state for given vector of rows to "b_visible"

Definition at line 223 of file alnmulti_widget.cpp.

References m_Model, CAlnMultiModel::SetVisible(), x_AdjustVisible(), x_RedrawControls(), and CGlWidgetBase::x_UpdateScrollbars().

Referenced by OnHideSelected(), OnShowOnlySelected(), OnUnhideSelected(), x_UpdateOnDataChanged(), and x_UpdateOnStylesChanged().

◆ UpdateOnScoringChanged()

void CAlnMultiWidget::UpdateOnScoringChanged ( )

virtual

Definition at line 936 of file alnmulti_widget.cpp.

References m_AlignPane, CAlnMultiPane::Update(), and x_RedrawControls().

Referenced by OnMethodProperties(), and x_SetScoringMethod().

◆ UpdateSortOrder()

void CAlnMultiWidget::UpdateSortOrder ( void )

virtual

Definition at line 927 of file alnmulti_widget.cpp.

References m_AlignPane, m_Model, CAlnMultiPane::UpdateHeaderSortState(), CAlnMultiModel::UpdateSortOrder(), and x_RedrawControls().

◆ UpdateView()

void CAlnMultiWidget::UpdateView ( void )

Definition at line 966 of file alnmulti_widget.cpp.

References m_AlignPane, CAlnMultiPane::Update(), and x_UpdateOnStylesChanged().

Referenced by CUpdateSeqAlignWidget::LoadSettingsV().

◆ x_AdjustVisible()

void CAlnMultiWidget::x_AdjustVisible ( bool b_reset )

protectedvirtual

Definition at line 1103 of file alnmulti_widget.cpp.

References CGlPane::AdjustToLimits(), CAlnMultiPane::GetAlignVPHeight(), CGlPane::GetModelLimitsRect(), GetPort(), CGlPane::GetVisibleRect(), m_AlignPane, CGlRect< T >::SetBottom(), CGlRect< T >::SetTop(), CGlPane::SetVisibleRect(), and CGlRect< T >::Top().

Referenced by OnRowChanged(), OnShowAll(), SetVisible(), x_OnResize(), x_UpdateOnDataChanged(), x_UpdateOnRowHChanged(), and x_UpdateOnSwitchMaster().

◆ x_CreateModel()

CAlnMultiModel * CAlnMultiWidget::x_CreateModel ( )

protectedvirtual

factory method creating and initializing a default model

Definition at line 132 of file alnmulti_widget.cpp.

References CAlnMultiModel::Init(), m_Model, NULL, and CAlnMultiModel::SetListener().

Referenced by x_CreatePane().

◆ x_CreatePane()

void CAlnMultiWidget::x_CreatePane ( void )

protectedvirtual

factory method creating master pane, called form x_CreateControls()

Implements CGlWidgetBase.

Definition at line 973 of file alnmulti_widget.cpp.

References _ASSERT, m_AlignPane, m_Model, NULL, CAlnMultiPane::SetContext(), CAlnMultiPane::SetWidget(), CSelListModelImpl< Item >::SLM_AddSLView(), wxID_ANY, and x_CreateModel().

◆ x_CreatePopupMenu()

static wxMenu * CAlnMultiWidget::x_CreatePopupMenu ( )

protectedvirtual

Definition at line 1522 of file alnmulti_widget.cpp.

References _ASSERT, CUICommandRegistry::AppendMenuItem(), cmd, CUICommandRegistry::CreateMenu(), eCmdDisableScoring, eCmdScoringMethodXXXX, eCmdSetAsDefaultMethod, FindSubItem(), IAlnExplorer::fInvalid, CUICommandRegistry::GetInstance(), CUIToolRegistry::GetInstance(), CUIToolRegistry::GetMRUToolNames(), ITERATE, CUIToolRegistry::MRUListExists(), ct::sort(), ToWxString(), and wxT.

Referenced by OnContextMenu().

◆ x_CreateScoringMethodsMenu()

void CAlnMultiWidget::x_CreateScoringMethodsMenu ( wxMenu & color_menu )

protectedvirtual

Definition at line 1591 of file alnmulti_widget.cpp.

References _ASSERT, CreateMenu(), CAlnMultiModel::GetCurrentMethod(), CMenuItem::GetLabel(), IUIToolWithGUI::GetMenu(), m_Model, and ToWxString().

◆ x_GetCurrentMethodName()

string CAlnMultiWidget::x_GetCurrentMethodName ( ) const

protectedvirtual

Definition at line 1326 of file alnmulti_widget.cpp.

References _ASSERT, CAlnMultiModel::GetCurrentMethod(), IUITool::GetName(), and m_Model.

Referenced by OnSetAsDefaultMethod(), OnShowMethodDlg(), OnUpdateScoringMethod(), and x_SetScoringMethod().

◆ x_GetDefMethodName()

string * CAlnMultiWidget::x_GetDefMethodName ( )

protectedvirtual

Definition at line 1423 of file alnmulti_widget.cpp.

References _ASSERT, IAlnExplorer::fDNA, IAlnExplorer::fProtein, IAlnMultiDataSource::GetAlignType(), CAlnMultiModel::GetDisplayStyle(), m_DataSource, CWidgetDisplayStyle::m_DefDNAMethod, CWidgetDisplayStyle::m_DefProteinMethod, m_Model, and NULL.

Referenced by OnSetAsDefaultMethod().

◆ x_GetMatchingHiddenRows()

void CAlnMultiWidget::x_GetMatchingHiddenRows ( vector< TNumrow > & rows )

protected

Definition at line 780 of file alnmulti_widget.cpp.

References IAlignRow::eDescr, multimap_checker< Container >::equal_range(), IAlignRow::fItemHidden, IAlignRow::fItemSelected, IAlignRow::GetColumnText(), GetDataSource(), GetModel(), IAlnMultiDataSource::GetNumRows(), CAlnMultiModel::GetRow(), IAlignRow::GetRowState(), multimap_checker< Container >::insert(), set< Key, Compare >::insert(), ITERATE, and row.

Referenced by OnUnhideSelected(), and OnUpdateUnhideSelected().

◆ x_GetPane()

CGlWidgetPane * CAlnMultiWidget::x_GetPane ( )

virtual

Reimplemented from CGlWidgetBase.

Definition at line 314 of file alnmulti_widget.cpp.

References m_AlignPane.

◆ x_GetScoringMRUListName()

string CAlnMultiWidget::x_GetScoringMRUListName ( )

protectedvirtual

Definition at line 1442 of file alnmulti_widget.cpp.

References IScoringMethod::GetAlignmentTagByType(), IAlnMultiDataSource::GetAlignType(), m_DataSource, and tag.

Referenced by x_SetScoringMethod().

◆ x_MakeVisibleHorz() [1/2]

void CAlnMultiWidget::x_MakeVisibleHorz	(	TSeqPos	from,
		TSeqPos	to
	)

protected

Definition at line 575 of file alnmulti_widget.cpp.

References GetPort(), CGlPane::GetVisibleRect(), CGlRect< T >::Left(), min(), CGlRect< T >::Right(), CGlPane::Scroll(), and x_UpdateOnZoom().

◆ x_MakeVisibleHorz() [2/2]

void CAlnMultiWidget::x_MakeVisibleHorz ( TSeqPos pos )

protected

Definition at line 569 of file alnmulti_widget.cpp.

◆ x_OnResize()

void CAlnMultiWidget::x_OnResize ( void )

protectedvirtual

Definition at line 1047 of file alnmulti_widget.cpp.

References CAlnMultiPane::GetAlignVPHeight(), CAlnMultiPane::GetAlignVPWidth(), GetPort(), m_AlignPane, CGlRect< T >::SetSize(), CGlPane::SetViewport(), x_AdjustVisible(), and CGlWidgetBase::x_UpdateScrollbars().

Referenced by OnChildResize().

◆ x_OnSaveVectorImage()

void CAlnMultiWidget::x_OnSaveVectorImage ( CPrintOptions::EOutputFormat format )

protected

Definition at line 1692 of file alnmulti_widget.cpp.

References format.

Referenced by OnSavePdf(), and OnSaveSvg().

◆ x_RedrawControls()

void CAlnMultiWidget::x_RedrawControls ( void )

protectedvirtual

Reimplemented from CGlWidgetBase.

Definition at line 1060 of file alnmulti_widget.cpp.

References m_AlignPane.

Referenced by OnMoveSelectedUp(), OnRowChanged(), OnShowAll(), Select(), SetVisible(), UpdateOnScoringChanged(), UpdateSortOrder(), x_UpdateOnDataChanged(), x_UpdateOnRowHChanged(), x_UpdateOnSwitchMaster(), and x_UpdateOnZoom().

◆ x_SetPortLimits()

virtual void CAlnMultiWidget::x_SetPortLimits ( void )

inlinevirtual

updates model limits of the Master CGlPane

Implements CGlWidgetBase.

Definition at line 124 of file alnmulti_widget.hpp.

◆ x_SetScoringMethod()

void CAlnMultiWidget::x_SetScoringMethod	(	const string &	method_name,
		bool	save
	)

protectedvirtual

◆ x_UpdateOnDataChanged()

void CAlnMultiWidget::x_UpdateOnDataChanged ( bool b_reset = true )

protectedvirtual

◆ x_UpdateOnRowHChanged()

void CAlnMultiWidget::x_UpdateOnRowHChanged ( void )

protectedvirtual

Definition at line 1120 of file alnmulti_widget.cpp.

References m_Model, CAlnMultiModel::UpdateOnRowHChanged(), x_AdjustVisible(), x_RedrawControls(), and CGlWidgetBase::x_UpdateScrollbars().

Referenced by OnRowChanged(), and x_UpdateOnStylesChanged().

◆ x_UpdateOnStylesChanged()

void CAlnMultiWidget::x_UpdateOnStylesChanged ( void )

protectedvirtual

◆ x_UpdateOnSwitchMaster()

void CAlnMultiWidget::x_UpdateOnSwitchMaster ( TNumrow NewMasterRow )

protectedvirtual

Definition at line 1134 of file alnmulti_widget.cpp.

References CGlRect< T >::Bottom(), C, CRangeCollection< Position >::CombineWith(), CEventHandler::eDispatch_Default, IAlnExplorer::eLeft, CAlnMultiPane::eLinearSelChanged, CEventHandler::ePool_Parent, IAlnExplorer::eRight, IAlnMultiDataSource::GetAlnPosFromSeqPos(), IAlnMultiDataSource::GetAnchor(), GetDataSource(), GetPort(), CAlnMultiPane::GetSelection(), IAlnMultiDataSource::GetSeqPosFromAlnPos(), CGlPane::GetVisibleRect(), ITERATE, CGlRect< T >::Left(), m_AlignPane, m_Model, CGlRect< T >::Right(), CEventHandler::Send(), CAlnMultiModel::SetMasterRow(), CAlnMultiPane::SetSelection(), CGlPane::SetVisibleRect(), CGlRect< T >::Top(), CAlnMultiPane::Update(), x_AdjustVisible(), x_RedrawControls(), and CGlWidgetBase::x_UpdateScrollbars().

Referenced by OnMakeConsensusRowMaster(), OnMakeSelectedRowMaster(), OnUnsetMaster(), and x_UpdateOnStylesChanged().

◆ x_UpdateOnZoom()

void CAlnMultiWidget::x_UpdateOnZoom ( void )

protectedvirtual

Reimplemented from CGlWidgetBase.

Definition at line 1203 of file alnmulti_widget.cpp.

References m_AlignPane, CAlnMultiPane::Update(), x_RedrawControls(), and CGlWidgetBase::x_UpdateScrollbars().

Referenced by OnZoomSequence(), Scroll(), SetScaleX(), x_MakeVisibleHorz(), x_ZoomToRange(), and ZoomToSelection().

◆ x_UpdateStyleColumns()

void CAlnMultiWidget::x_UpdateStyleColumns ( )

protectedvirtual

Definition at line 873 of file alnmulti_widget.cpp.

References CAlnMultiRenderer::GetColumn(), CAlnMultiRenderer::GetColumnsCount(), CAlnMultiModel::GetDisplayStyle(), CAlnMultiPane::GetRenderer(), i, m_AlignPane, CWidgetDisplayStyle::m_Columns, m_Model, IAlnMultiHeaderContext::SColumn::m_Name, IAlnMultiHeaderContext::SColumn::m_Visible, and IAlnMultiHeaderContext::SColumn::m_Width.

Referenced by OnColumnsChanged(), and OnSettings().

◆ x_ZoomToRange()

void CAlnMultiWidget::x_ZoomToRange	(	TSeqPos	from,
		TSeqPos	to
	)

protected

Definition at line 558 of file alnmulti_widget.cpp.

References GetPort(), CGlPane::GetVisibleRect(), CGlRect< T >::SetLeft(), CGlRect< T >::SetRight(), x_UpdateOnZoom(), and CGlPane::ZoomRect().

Referenced by ZoomRect(), and ZoomToSelection().

◆ ZoomPoint()

void CAlnMultiWidget::ZoomPoint	(	const TModelPoint &	point,
		TModelUnit	factor
	)

virtual

Implements IAlnMultiPaneParent.

Definition at line 393 of file alnmulti_widget.cpp.

References GetPort(), and CGlPane::ZoomPoint().

◆ ZoomRect()

void CAlnMultiWidget::ZoomRect ( const TModelRect & rc )

virtual

Implements IAlnMultiPaneParent.

Definition at line 385 of file alnmulti_widget.cpp.

References CGlRect< T >::Left(), CGlRect< T >::Right(), and x_ZoomToRange().

◆ ZoomToSelection()

void CAlnMultiWidget::ZoomToSelection ( )

Definition at line 538 of file alnmulti_widget.cpp.

References CRange_Base::GetFrom(), CAlnMultiPane::GetSelectionLimits(), CRange_Base::GetTo(), m_AlignPane, COpenRange< Position >::NotEmpty(), x_UpdateOnZoom(), and x_ZoomToRange().

Referenced by OnZoomSelection(), and CUpdateSeqAlignWidget::x_OnAlnWidgetSelChanged().

Member Data Documentation

◆ m_AlignPane

CAlnMultiPane* CAlnMultiWidget::m_AlignPane

protected

◆ m_CmdToName

TCmdToName CAlnMultiWidget::m_CmdToName

protected

widget rendering data and handling events

Definition at line 320 of file alnmulti_widget.hpp.

Referenced by OnScoringMethod(), and OnUpdateScoringMethod().

◆ m_DataSource

IAlnMultiDataSource* CAlnMultiWidget::m_DataSource

protected

Definition at line 314 of file alnmulti_widget.hpp.

Referenced by GetDataSource(), OnDSChanged(), CUpdateSeqAlignWidget::OnDSChanged(), OnShowMethodDlg(), OnUpdateShowMethodDlg(), SaveSettings(), CUpdateSeqAlignWidget::SaveSettingsV(), SetDataSource(), CUpdateSeqAlignWidget::x_FindAnchorRow(), x_GetDefMethodName(), x_GetScoringMRUListName(), and x_UpdateOnStylesChanged().

◆ m_Model

CAlnMultiModel* CAlnMultiWidget::m_Model

protected

source of alignment data

Definition at line 316 of file alnmulti_widget.hpp.

Referenced by CreateWidget(), GetDisplayStyle(), GetLineByRowNum(), GetModel(), GetPort(), GetRowNumByLine(), GetSelectedRows(), LoadSettings(), CUpdateSeqAlignWidget::LoadSettingsV(), OnDSChanged(), CUpdateSeqAlignWidget::OnDSChanged(), OnHasSelected(), OnHideSelected(), OnMakeSelectedRowMaster(), OnMethodProperties(), OnMoveSelectedUp(), OnRowChanged(), OnSettings(), OnShowAll(), OnShowOnlySelected(), OnUpdateDisableScoring(), OnUpdateMakeConsensusRowMaster(), OnUpdateMakeSelectedRowMaster(), OnUpdateMarkSelected(), OnUpdateMethodProperties(), OnUpdateUnsetMaster(), SaveSettings(), CUpdateSeqAlignWidget::SaveSettingsV(), SaveVectorImage(), Select(), SetDataSource(), SetStyleCatalog(), SetVisible(), UpdateSortOrder(), x_CreateModel(), x_CreatePane(), x_CreateScoringMethodsMenu(), CUpdateSeqAlignWidget::x_FindAnchorRow(), x_GetCurrentMethodName(), x_GetDefMethodName(), x_SetScoringMethod(), x_UpdateOnDataChanged(), x_UpdateOnRowHChanged(), x_UpdateOnStylesChanged(), x_UpdateOnSwitchMaster(), x_UpdateStyleColumns(), and ~CAlnMultiWidget().

The documentation for this class was generated from the following files:

include/gui/widgets/aln_multiple/alnmulti_widget.hpp
src/gui/widgets/aln_multiple/alnmulti_widget.cpp

Public Types

Public Member Functions

Static Public Member Functions

Protected Types

Protected Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ TCmdToName

◆ TLine

◆ TNumrow

◆ TPSeqLocList

◆ TRangeColl

◆ TRSeqIdVector

Constructor & Destructor Documentation

◆ CAlnMultiWidget()

◆ ~CAlnMultiWidget()

Member Function Documentation

◆ CreateWidget()

◆ GetDataSource() [1/2]

◆ GetDataSource() [2/2]

◆ GetDisplayStyle()

◆ GetLineByRowNum()

◆ GetMarks()

◆ GetModel() [1/2]

◆ GetModel() [2/2]

◆ GetObjectSelection()

◆ GetPort() [1/2]

◆ GetPort() [2/2]

◆ GetRowNumByLine()

◆ GetSelectedIds()

◆ GetSelectedRows()

◆ GetSelection()

◆ HasSelectedObjects()

◆ IsRendererFocused()

◆ LoadSettings()

◆ OnChildResize()

◆ OnColumnsChanged()

◆ OnContextMenu()

◆ OnDisableScoring()

◆ OnDSChanged()

◆ OnEnableSavePdfCmdUpdate()

◆ OnEnableSaveSvgCmdUpdate()

◆ OnHasSelected()

◆ OnHideSelected()

◆ OnMakeConsensusRowMaster()

◆ OnMakeSelectedRowMaster()

◆ OnMarkSelected()

◆ OnMethodProperties()

◆ OnMoveSelectedUp()

◆ OnResetSelection()

◆ OnRowChanged()

◆ OnSavePdf()

◆ OnSaveSvg()

◆ OnScoringFinished()

◆ OnScoringMethod()

◆ OnScoringProgress()

◆ OnSetAsDefaultMethod()

◆ OnSettings()

◆ OnShowAll()

◆ OnShowMethodDlg()

◆ OnShowOnlySelected()

◆ OnUnhideSelected()

◆ OnUnMarkAll()

◆ OnUnMarkSelected()

◆ OnUnsetMaster()

◆ OnUpdateDisableScoring()

◆ OnUpdateMakeConsensusRowMaster()

◆ OnUpdateMakeSelectedRowMaster()

◆ OnUpdateMarkSelected()

◆ OnUpdateMethodProperties()

◆ OnUpdateScoringMethod()

◆ OnUpdateSettings()

◆ OnUpdateShowMethodDlg()

◆ OnUpdateUnhideSelected()

◆ OnUpdateUnsetMaster()

◆ OnUpdateZoomSelection()

◆ OnZoomSelection()

◆ OnZoomSequence()