Similar studies for GEO DataSets (Select 200008780) - GEO DataSets

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Items: 19

Select item 2000087801.

Comparative expression analysis between sigE (TTHB211) deletion mutant and wild-type of T. thermophilus HB8

(Submitter supplied) We observed the expression profile of the total mRNA of sigE (TTHB211) deletion mutant of Thermus thermophilus HB8 strain grown in a rich (TT) medium at 70oC compared with that of wild type. Keywords: cell type comparison

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
6 Samples

Download data: CEL

Series

Accession:: GSE8780

ID:: 200008780

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000087812.

SuperSeries for the study of expression analysis of the T. thermophilus sigE (TTHB211)

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
35 Samples

Download data: CEL

Series

Accession:: GSE8781

ID:: 200008781

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000071653.

Time course of the mRNA expression in wild-type Thermus thermophilus HB8 strain grown on a rich medium (labeling:ENZO)

(Submitter supplied) We observed the expression profile of the total mRNA of wild-type Thermus thermophilus HB8 strain grown in a rich (TT) medium at 70oC. Keywords: time course

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
30 Samples

Download data: CEL

Series

Accession:: GSE7165

ID:: 200007165

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000105484.

SuperSeries for the study of expression analysis of the T. thermophilus sigE (TTHB211) and anti-sigE (TTHB212)

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
12 Samples

Download data: CEL

Series

Accession:: GSE10548

ID:: 200010548

Select item 2000103715.

Comparative expression analysis between TTHB212 deletion mutant and wild-type of T. thermophilus HB8

(Submitter supplied) We observed the expression profile of the total mRNA of TTHB212 deletion mutant of Thermus thermophilus HB8 strain grown in a rich (TR) medium at 70°C compared with that of wild type. Keywords: cell type comparison

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
6 Samples

Download data: CEL

Series

Accession:: GSE10371

ID:: 200010371

Select item 2000369126.

SuperSeries for the study of expression analysis of the PfmR (TTHB023) in T. thermophilus HB8

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
40 Samples

Download data: CEL

Series

Accession:: GSE36912

ID:: 200036912

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000369097.

Comparative expression analysis between PfmR (TTHB023) deletion mutant and wild-type of Thermus thermophilus HB8

(Submitter supplied) We observed the expression profile of the total mRNA of PfmR (TTHB023) deletion mutant of Thermus thermophilus HB8 strain grown in a rich (TT) medium at 70°C compared with that of wild type.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
10 Samples

Download data: CEL

Series

Accession:: GSE36909

ID:: 200036909

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000368848.

Expression profile of wild-type Thermus thermophilus HB8 strain cultured in TT medium for 6 h, reproduced in 2011

(Submitter supplied) We observed the expression profile of the total mRNA of the wild-type strain grown in a rich medium at 70 deg-C for 360 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
4 Samples

Download data: CEL

Series

Accession:: GSE36884

ID:: 200036884

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Select item 2000368839.

Expression profile of wild-type Thermus thermophilus HB8 strain cultured in TT medium for 6 h, reproduced in 2010

(Submitter supplied) We observed the expression profile of the total mRNA of the wild-type strain grown in a rich medium at 70 deg-C for 360 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
3 Samples

Download data: CEL

Series

Accession:: GSE36883

ID:: 200036883

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003688110.

Expression profile of PfmR (TTHB023)-deficient Thermus thermophilus HB8 strain

(Submitter supplied) In order to find function of PfmR protein from T. thermophilus HB8, we observed the expression profile of the total mRNA of the PfmR-deficient strain grown in a rich medium at 70°C for 360 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
3 Samples

Download data: CEL

Series

Accession:: GSE36881

ID:: 200036881

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20002129011.

Time course of the mRNA expression in wild-type Thermus thermophilus HB8 strain grown in a rich medium (labeling:Affymetrix)

(Submitter supplied) In order to observe altered expression profile of wild-type T. thermophilus HB8 strain grown in a rich (TT) medium at 70°C. we analyzed time-dependent mRNA expression profile of the total mRNA from the strain, which corresponds the logarithmic phase to the early stationary phase.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
30 Samples

Download data: CEL

Series

Accession:: GSE21290

ID:: 200021290

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Select item 20000717512.

SuperSeries for the study of expression analysis of the T. thermophilus CRP (TTHA1437)

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
41 Samples

Download data: CEL

Series

Accession:: GSE7175

ID:: 200007175

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Select item 20000716613.

Comparative expression analysis between CRP (TTHA1437) deletion mutant and wild-type of T. thermophilus HB8

(Submitter supplied) We observed the expression profile of the total mRNA of crp (TTHA1437) deletion mutant of Thermus thermophilus HB8 strain grown in a rich (TT) medium at 70oC compared with that of wild type. Keywords: cell type comparison

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
12 Samples

Download data: CEL

Series

Accession:: GSE7166

ID:: 200007166

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Select item 20004686814.

Differential expression analysis of T. thermophilus HB8 wild-type strain in response to addition of silicic acid and removal of iron.

(Submitter supplied) We observed the expression profile of the total mRNA in Thermus thermophilus HB8 wild-type strain at 60 min after the addition of silicic acid and removal of iron.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
9 Samples

Download data: CEL, CHP

Series

Accession:: GSE46868

ID:: 200046868

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Select item 20002781815.

mRNA expression under alkylating condition in wild-type strain and ttha1564 deletion mutant of Thermus thermophilus HB8

(Submitter supplied) We analyzed the expression profile of wild-type strain and ttha1564 deletion mutant strain of Thermus thermophils HB8 under alkylating condition. In wild type strain, 107 genes and 96 genes were over 2-fold up- and under 0.5-fold down-regulated by alkylation, respectively. In ttha1564 deletion mutant, 35 genes and 12 genes were over 2-fold up- and under 0.5-fold down-regulated by alkylation, respectively. more...

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
12 Samples

Download data: CEL

Series

Accession:: GSE27818

ID:: 200027818

Select item 20002296216.

mRNA expression in wild-type of Thermus thermophilus HB8 strain grown on a rich (TT) medium at 45˚C and 70˚C

(Submitter supplied) We observed the expression profile of the total mRNA of wild-type of Thermus thermophilus HB8 strain grown in a rich (TT) medium at 45˚C compared with that of 70˚C. Keywords: Growth temperature

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
12 Samples

Download data: CEL

Series

Accession:: GSE22962

ID:: 200022962

Select item 20002257617.

RpoE regulon in Rhodobacter sphaeroides

(Submitter supplied) In Rhodobacter sphaeroides a transcriptional response to the reactive oxygen species singlet oxygen is controlled by the group IV sigma factor RpoE and the anti-sigma factor ChrR. In this study, we integrated various large datasets to identify genes within the singlet oxygen stress response that contain RpoE-dependent promoters within R. sphaeroides. Transcript pattern clustering and a RpoE-binding sequence model were used to predict candidate promoters that respond to singlet oxygen stress in R. more...

Organism:: Cereibacter sphaeroides 2.4.1

Type:: Genome binding/occupancy profiling by genome tiling array

Platform:: GPL10463
6 Samples

Download data: GFF, TXT

Series

Accession:: GSE22576

ID:: 200022576

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 10001046318.

UW_Rhodobacter_sphaeroides_2.4.1_385K_v2

(Submitter supplied) Oligo probes are 45bp in average, tiling the genome sequences with about 35-bp overlap between consecutive probes. Every other probe hybridizes to the reverse strand. Native array description file: 2007-06-20_R_sphaeroides_long85_v2.ndf Native array description file: 2007-06-20_R_sphaeroides_long85_v2.pos Protocol: See manufacturer's web site (www.nimblegen.com)

Organism:: Cereibacter sphaeroides 2.4.1

4 Series
21 Samples

Download data: NDF, POS

Platform

Accession:: GPL10463

ID:: 100010463

PubMed Full text in PMC Similar studies

Select item 20006998119.

In vivo recruitment analysis and a mutant strain without any group 2 σ factors reveal roles of different σ factors in cyanobacteria

(Submitter supplied) In eubacteria, replacement of one σ factor in the RNA polymerase (RNAP) holoenzyme by another one changes the transcription pattern. Cyanobacteria are eubacteria characterized by oxygenic photosynthesis and they typically encode numerous group 2 σ factors that closely resemble the essential primary σ factor. A mutant strain of the model cyanobacterium Synechocystis sp. PCC 6803 without functional group 2 σ factors (named as ΔsigBCDE) could not acclimate to heat, high salt, or bright light stress but in standard conditions ΔsigBCDE grew only 9% slower than the control strain. more...