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Links from GEO DataSets

Items: 20

1.

Evolutionary principles of modular gene regulation in Yeasts

(Submitter supplied) Comparative time-series expression analysis of growth curves through carbon depletion in the ascomycete yeasts
Organism:
Schizosaccharomyces japonicus; Saccharomyces bayanus; Candida albicans; Naumovozyma castellii; Saccharomyces paradoxus; Lachancea waltii; Saccharomyces cerevisiae; Yarrowia lipolytica; Kluyveromyces lactis; Saccharomyces mikatae; Lachancea kluyveri NRRL Y-12651; Debaryomyces hansenii; Vanderwaltozyma polyspora; Schizosaccharomyces pombe; Lachancea kluyveri; Nakaseomyces glabratus
Type:
Expression profiling by array
16 related Platforms
422 Samples
Download data: TXT
Series
Accession:
GSE36253
ID:
200036253
2.

Evolutionary principles of modular gene regulation in Yeasts

(Submitter supplied) Comparative time-series expression analysis of growth curves through carbon depletion in the ascomycete yeasts.
Organism:
Schizosaccharomyces pombe; Candida albicans; Kluyveromyces lactis; Schizosaccharomyces japonicus; Nakaseomyces glabratus; Naumovozyma castellii; Lachancea waltii; Saccharomyces cerevisiae
Type:
Expression profiling by array
9 related Platforms
205 Samples
Download data: TXT
Series
Accession:
GSE38478
ID:
200038478
3.

Genome-wide nucleosome position data for 3 yeast species

(Submitter supplied) Genome-wide nucleosome position data for wildtype and mutant strains in S. cerevisiae, C. albicans, and S. pombe
Organism:
Schizosaccharomyces pombe; Candida albicans; Saccharomyces cerevisiae
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL9134 GPL9133 GPL9854
7 Samples
Download data: TXT, WIG
Series
Accession:
GSE28839
ID:
200028839
4.

Genome-wide nucleosome position data for 12 yeast species

(Submitter supplied) We mapped nucleosome positions genome-wide in 12 Ascomycetes
Organism:
Lachancea waltii; Saccharomyces cerevisiae; Saccharomyces paradoxus; Nakaseomyces glabratus; Kluyveromyces lactis; Saccharomyces mikatae; Lachancea kluyveri NRRL Y-12651; Saccharomyces bayanus; Yarrowia lipolytica; Naumovozyma castellii; Debaryomyces hansenii; Candida albicans
Type:
Genome binding/occupancy profiling by high throughput sequencing
12 related Platforms
13 Samples
Download data: TXT, WIG
Series
Accession:
GSE22211
ID:
200022211
5.

Absolute expression level of Saccharomyces bayanus genes

(Submitter supplied) Total RNA versus genomic DNA hybridization on custom arrays designed for all Saccharomyces bayanus genes
Organism:
Saccharomyces bayanus
Type:
Expression profiling by array
Platform:
GPL10505
4 Samples
Download data: TXT
Series
Accession:
GSE22205
ID:
200022205
6.

Absolute expression level of Saccharomyces cerevisiae genes

(Submitter supplied) Total RNA versus genomic DNA hybridization on custom arrays designed for all Saccharomyces cerevisiae genes
Organism:
Saccharomyces cerevisiae
Type:
Expression profiling by array
Platform:
GPL9294
5 Samples
Download data: TXT
Series
Accession:
GSE22204
ID:
200022204
7.

Absolute expression level of Saccharomyces kluyveryii genes

(Submitter supplied) Total RNA versus genomic DNA hybridization on custom arrays designed for all Saccharomyces kluyveryii genes
Organism:
Lachancea kluyveri NRRL Y-12651
Type:
Expression profiling by array
Platform:
GPL10503
4 Samples
Download data: TXT
Series
Accession:
GSE22202
ID:
200022202
8.

Absolute expression level of Saccharomyces mikatae genes

(Submitter supplied) Total RNA versus genomic DNA hybridization on custom arrays designed for all Saccharomyces mikatae genes
Organism:
Saccharomyces mikatae
Type:
Expression profiling by array
Platform:
GPL10502
4 Samples
Download data: TXT
Series
Accession:
GSE22201
ID:
200022201
9.

Absolute expression level of Saccharomyces castellii genes

(Submitter supplied) Total RNA versus genomic DNA hybridization on custom arrays designed for all Saccharomyces castellii genes
Organism:
Naumovozyma castellii
Type:
Expression profiling by array
Platform:
GPL10501
4 Samples
Download data: TXT
Series
Accession:
GSE22200
ID:
200022200
10.

Absolute expression level of Kluyveromyces waltii genes

(Submitter supplied) Total RNA versus genomic DNA hybridization on custom arrays designed for all Kluyveromyces waltii genes
Organism:
Lachancea waltii
Type:
Expression profiling by array
Platform:
GPL10500
4 Samples
Download data: TXT
Series
Accession:
GSE22199
ID:
200022199
11.

Absolute expression level of Kluyveromyces lactis genes

(Submitter supplied) Total RNA versus genomic DNA hybridization on custom arrays designed for all Kluyveromyces lactis genes
Organism:
Kluyveromyces lactis
Type:
Expression profiling by array
Platform:
GPL10499
4 Samples
Download data: TXT
Series
Accession:
GSE22198
ID:
200022198
12.

Absolute expression level of Candida albicans genes

(Submitter supplied) Total RNA versus genomic DNA hybridization on custom arrays designed for all Candida albicans genes
Organism:
Candida albicans
Type:
Expression profiling by array
Platform:
GPL10498
4 Samples
Download data: TXT
Series
Accession:
GSE22197
ID:
200022197
13.

Absolute expression level of Candida glabrata genes

(Submitter supplied) Total RNA versus genomic DNA hybridization on custom arrays designed for all Candida glabrata genes
Organism:
Nakaseomyces glabratus
Type:
Expression profiling by array
Platform:
GPL10497
3 Samples
Download data: TXT
Series
Accession:
GSE22194
ID:
200022194
14.

Absolute expression level of Saccharomyces paradoxus genes

(Submitter supplied) Total RNA versus genomic DNA hybridization on custom arrays designed for all Saccharomyces paradoxus genes
Organism:
Saccharomyces paradoxus
Type:
Expression profiling by array
Platform:
GPL10496
4 Samples
Download data: TXT
Series
Accession:
GSE22193
ID:
200022193
15.

Absolute expression level of Yarrowia lipolytica genes

(Submitter supplied) Total RNA versus genomic DNA hybridization on custom arrays designed for all Yarrowia lipolytica genes
Organism:
Yarrowia lipolytica
Type:
Expression profiling by array
Platform:
GPL10495
4 Samples
Download data: TXT
Series
Accession:
GSE22192
ID:
200022192
16.

Absolute expression level of Debaryomyces hansenii genes

(Submitter supplied) Total RNA versus genomic DNA hybridization on custom arrays designed for all Debaryomyces hansenii genes
Organism:
Debaryomyces hansenii
Type:
Expression profiling by array
Platform:
GPL10494
4 Samples
Download data: TXT
Series
Accession:
GSE22191
ID:
200022191
17.

The role of nucleosome positioning in the evolution of gene regulation

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Lachancea waltii; Saccharomyces cerevisiae; Yarrowia lipolytica; Nakaseomyces glabratus; Kluyveromyces lactis; Saccharomyces mikatae; Lachancea kluyveri NRRL Y-12651; Debaryomyces hansenii; Candida albicans; Saccharomyces bayanus; Naumovozyma castellii; Saccharomyces paradoxus
Type:
Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing
24 related Platforms
61 Samples
Download data: TXT, WIG
Series
Accession:
GSE21960
ID:
200021960
18.

Heterochronic Evolution Reveals Modular Timing Changes in Budding Yeast Transcriptomes

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Saccharomyces paradoxus; Saccharomyces cerevisiae
Type:
Expression profiling by array
Platform:
GPL11064
196 Samples
Download data: GPR
Series
Accession:
GSE24772
ID:
200024772
19.

Heterochronic Evolution Reveals Modular Timing Changes in Budding Yeast Transcriptomes (Natural Strain Timecourse)

(Submitter supplied) Multi-genome, time series transcriptome measurements across the budding yeast cell cycle 378 genome-wide microarray measurements, 18 timepoints, nine strains of S. cerevisiae and one strain of S. paradoxus
Organism:
Saccharomyces paradoxus; Saccharomyces cerevisiae
Type:
Expression profiling by array
Platform:
GPL11064
173 Samples
Download data: GPR, TXT
Series
Accession:
GSE24771
ID:
200024771
20.

Heterochronic Evolution Reveals Modular Timing Changes in Budding Yeast Transcriptomes (Mutation Accumulation Lines)

(Submitter supplied) 45 genome-wide microarray measurements for 23 mutation accumulation lines grown in YPD liquid culture MA lines obtained by single-colony transfer on YPD plates for 600 generations, starting from a BY4741 derived strain (see Zeyl C, DeVisser JA: Estimates of the rate and distribution of fitness effects of spontaneous mutation in Saccharomyces cerevisiae. Genetics 2001, 157:53–61)
Organism:
Saccharomyces cerevisiae
Type:
Expression profiling by array
Platform:
GPL11064
23 Samples
Download data: GPR
Series
Accession:
GSE24770
ID:
200024770
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