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Links from GEO DataSets

Items: 20

1.

Genome Methylation Predicts Age and Longevity of Bats

(Submitter supplied) An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from several tissues in several bat species. Tissues: skin (wing punches), liver, brain, skeletal muscle.
Organism:
Pteropus poliocephalus; Pteropus hypomelanus; Phyllostomus hastatus; Eptesicus fuscus; Nyctalus noctula; Cynopterus brachyotis; Rhinolophus ferrumequinum; Myotis vivesi; Artibeus jamaicensis; Antrozous pallidus; Homo sapiens; Mus musculus; Molossus molossus; Nycticeius humeralis; Myotis myotis; Saccopteryx bilineata; Phyllostomus discolor; Pteropus vampyrus; Rousettus aegyptiacus; Desmodus rotundus; Rattus norvegicus; Myotis lucifugus; Rhynchonycteris naso; Tadarida brasiliensis; Carollia perspicillata; Eidolon helvum; Pteropus rodricensis; Myotis brandtii; Pteropus giganteus; Pteropus pumilus; Leptonycteris yerbabuenae
Type:
Methylation profiling by array
Platform:
GPL28271
908 Samples
Download data: DOCX, IDAT, TXT
Series
Accession:
GSE164127
ID:
200164127
2.

P31.Dataset

(Submitter supplied) Cytosine methylation data generated on mammalian methylation platform
Organism:
Mus musculus; Rattus; Macaca mulatta; Homo sapiens
Type:
Methylation profiling by genome tiling array
Platform:
GPL32543
96 Samples
Download data: IDAT
Series
Accession:
GSE223944
ID:
200223944
3.

P30.Dataset

(Submitter supplied) Cytosine methylation data generated on mammalian methylation platform
Organism:
Macaca mulatta; Homo sapiens; Mus musculus; Rattus
Type:
Methylation profiling by genome tiling array
Platform:
GPL32543
95 Samples
Download data: IDAT
Series
Accession:
GSE223943
ID:
200223943
4.

Mammalian Methylation Consortium

(Submitter supplied) The Mammalian Methylation Consortium aimed to characterize the relationship between cytosine methylation levels and a) species characteristics such as maximum lifespan and b) individual sample characteristics such as age, sex, tissue type. Both supervised machine learning approaches and unsupervised machine learning approaches were applied to the data as described in the citations. To facilitate comparative analyses across species, the mammalian methylation consortium applied a single measurement platform (the mammalian methylation array, GPL28271) to n=15216 DNA samples derived from 70 tissue types of 348 different mammalian species (331 eutherian-, 15 marsupial-, and 2 monotreme species). more...
Organism:
Didelphis virginiana; Didelphis marsupialis; Notamacropus agilis; Macropus fuliginosus; Choloepus hoffmanni; Amblysomus hottentotus; Artibeus jamaicensis; Varecia variegata; Cheirogaleus medius; Gorilla gorilla; Pongo pygmaeus; Homo sapiens; Crocuta crocuta; Phoca vitulina; Phocoena phocoena; Delphinapterus leucas; Physeter catodon; Diceros bicornis; Odocoileus virginianus; Muntiacus vaginalis; Bos taurus; Tragelaphus oryx; Sylvilagus floridanus; Peromyscus maniculatus; Microtus pennsylvanicus; Mus musculus; Cryptomys hottentotus; Hapalemur griseus; Nanger granti; Balaena mysticetus; Molossus molossus; Nycticeius humeralis; Elephantulus edwardii; Sylvilagus audubonii; Propithecus tattersalli; Nannospalax ehrenbergi; Sciurus niger; Sorex cinereus; Tupaia belangeri; Cavia aperea; Phascolarctos cinereus; Ochotona rufescens; Sorex palustris; Cabassous unicinctus; Myotis myotis; Aplodontia rufa; Pipistrellus pipistrellus; Saccopteryx bilineata; Addax nasomaculatus; Antidorcas marsupialis; Kobus megaceros; Chlorocebus sabaeus; Ctenomys opimus; Neomys fodiens; Sorex vagrans; Eidolon helvum; Pteropus rodricensis; Okapia johnstoni; Phyllostomus discolor; Lagenorhynchus obliquidens; Callospermophilus saturatus; Xanthonycticebus pygmaeus; Cephalorhynchus commersonii; Cuniculus paca; Myotis brandtii; Myotis nattereri; Elephantulus myurus; Rhabdomys pumilio; Pteropus vampyrus; Apodemus uralensis; Condylura cristata; Tamiasciurus douglasii; Neurotrichus gibbsii; Rhombomys opimus; Rhinolophus alcyone; Myotis evotis; Meriones rex; Hemicentetes semispinosus; Microgale cowani; Dendrohyrax arboreus; Propithecus coquereli; Hipposideros ruber; Galea musteloides leucoblephara; Alexandromys mongolicus; Nannospalax galili; Lasiopodomys gregalis; Ornithorhynchus anatinus; Notamacropus eugenii; Osphranter rufus; Suncus murinus; Tadarida brasiliensis; Antrozous pallidus; Nycticebus coucang; Perodicticus potto; Macaca mulatta; Canis latrans; Mustela putorius furo; Panthera leo; Panthera tigris; Puma concolor; Delphinus delphis; Megaptera novaeangliae; Equus caballus; Orycteropus afer; Tragelaphus imberbis; Tamiasciurus hudsonicus; Cricetulus longicaudatus; Mesocricetus auratus; Meriones unguiculatus; Cricetomys gambianus; Galea musteloides; Hydrochoerus hydrochaeris; Bathyergus suillus; Lagenorhynchus albirostris; Macroscelides proboscideus; Sciurus carolinensis; Daubentonia madagascariensis; Eulemur rubriventer; Oreamnos americanus; Enhydra lutris; Hippotragus equinus; Hippotragus niger; Globicephala macrorhynchus; Apodemus agrarius; Carollia perspicillata; Peromyscus californicus; Tamias striatus; Steno bredanensis; Phodopus campbelli; Hylomys suillus; Urocitellus columbianus; Jaculus jaculus; Callithrix geoffroyi; Mustela frenata; Ctenomys lewisi; Sorex roboratus; Tamias amoenus; Tragelaphus angasii; Chrysocyon brachyurus; Nanger soemmerringii; Eudorcas thomsonii; Dipus sagitta; Tursiops aduncus; Tenrec ecaudatus; Neotoma cinerea; Microtus richardsoni; Pteropus giganteus; Pteropus pumilus; Mops pumilus; Meriones libycus; Setifer setosus; Ellobius talpinus; Cricetulus barabensis; Suncus varilla; Lasiopodomys mandarinus; Aonyx cinereus; Myodes rufocanus; Varecia rubra; Leptonycteris yerbabuenae; Eulemur rufus; Fukomys damarensis; Eulemur albifrons; Gerbillus cheesmani; Microgale drouhardi; Notamacropus rufogriseus; Nesogale talazaci; Tachyglossus aculeatus; Sarcophilus harrisii; Macropus giganteus; Tamandua mexicana; Dasypus novemcinctus; Erinaceus europaeus; Atelerix albiventris; Sorex hoyi; Pteropus poliocephalus; Pteropus hypomelanus; Rousettus aegyptiacus; Phyllostomus hastatus; Lemur catta; Otolemur crassicaudatus; Loris tardigradus; Callithrix jacchus; Papio hamadryas; Canis lupus familiaris; Ursus americanus; Martes americana; Odobenus rosmarus divergens; Elephas maximus; Loxodonta africana; Rhinoceros unicornis; Procavia capensis; Sus scrofa domesticus; Capreolus capreolus; Cervus elaphus; Aepyceros melampus; Ochotona princeps; Peromyscus leucopus; Mus minutoides; Rattus norvegicus; Rattus rattus; Cavia porcellus; Myocastor coypus; Heterocephalus glaber; Monodelphis domestica; Choloepus didactylus; Eptesicus fuscus; Chaetophractus villosus; Vombatus ursinus; Galago moholi; Acinonyx jubatus; Dromiciops gliroides; Eulemur mongoz; Suricata suricatta; Phoca groenlandica; Ictidomys tridecemlineatus; Glaucomys sabrinus; Lepus americanus; Mesoplodon bidens; Sylvilagus nuttallii; Nyctalus noctula; Castor canadensis; Trachypithecus francoisi; Cynopterus brachyotis; Lynx rufus; Plecotus auritus; Ctenomys steinbachi; Sorex minutissimus; Sorex tundrensis; Sorex trowbridgii; Nanger dama; Tragelaphus eurycerus; Tragelaphus spekii; Gazella leptoceros; Tupaia tana; Microtus ochrogaster; Propithecus diadema; Cyclopes didactylus; Eulemur flavifrons; Equus quagga; Marmota flaviventris; Parascalops breweri; Connochaetes taurinus albojubatus; Eozapus setchuanus; Phodopus roborovskii; Eulemur sanfordi; Tamias townsendii; Rhinopoma hardwickii; Ochotona dauurica; Ochotona hyperborea; Ochotona pallasi; Cavia tschudii; Myotis thysanodes; Myotis yumanensis; Neophoca cinerea; Zapus princeps; Tolypeutes matacus; Myotis vivesi; Tupaia longipes; Paraechinus aethiopicus; Microtus guentheri; Smutsia temminckii; Mirza zaza; Alticola semicanus; Lasiopodomys brandtii; Neogale vison; Crocidura cyanea; Microtus maximowiczii; Micaelamys namaquensis; Clethrionomys gapperi; Galeopterus variegatus; Sylvilagus brasiliensis; Cephalorhynchus hectori hectori; Cephalorhynchus hectori maui; Paraechinus hypomelas; Microgale thomasi; Cervus canadensis; Alexandromys oeconomus; Osphranter robustus; Bradypus variegatus; Echinops telfairi; Blarina brevicauda; Desmodus rotundus; Pan troglodytes; Lycaon pictus; Vulpes vulpes; Felis catus; Zalophus californianus; Orcinus orca; Tursiops truncatus; Balaenoptera borealis; Balaenoptera musculus; Trichechus manatus; Equus grevyi; Sus scrofa; Giraffa camelopardalis; Capra hircus; Ovis aries; Tragelaphus strepsiceros; Oryctolagus cuniculus; Marmota monax; Cricetulus griseus; Ondatra zibethicus; Acomys cahirinus; Apodemus sylvaticus; Hystrix cristata; Bathyergus janetta; Georychus capensis; Eulemur coronatus; Eulemur fulvus; Vicugna pacos; Eulemur macaco; Microcebus murinus; Chinchilla lanigera; Erethizon dorsatum; Eumetopias jubatus; Caenolestes fuliginosus; Peromyscus eremicus; Peromyscus polionotus; Eulemur fulvus collaris; Lepus californicus; Tamandua tetradactyla; Talpa occidentalis; Myotis lucifugus; Rhinolophus ferrumequinum; Arvicanthis niloticus; Sorex caecutiens; Sorex isodon; Litocranius walleri; Scalopus aquaticus; Equus asinus somalicus; Ceratotherium simum simum; Callospermophilus lateralis; Mustela altaica; Microtus fortis; Napaeozapus insignis; Apodemus peninsulae; Ochotona alpina; Scapanus orarius; Hemiechinus auritus; Orientallactaga sibirica; Rhynchonycteris naso; Gerbillus nanus; Tupaia gracilis; Sylvilagus bachmani; Alticola barakshin; Asellia tridens; Nothocricetulus migratorius
Type:
Methylation profiling by array
Platform:
GPL28271
15043 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE223748
ID:
200223748
5.

In vivo partial reprogramming in 4F mice

(Submitter supplied) Partial reprogramming by expression of reprogramming factors (Oct4, Sox2, Klf4 and cMyc) for short periods of time restores a youthful epigenetic signature to aging cells and extends the lifespan of a premature aging mouse model. However, the effects of longer-term partial reprogramming in physiologically aging wild-type mice are unknown. Here, we have performed various long-term partial reprogramming regimens, including different onset timings, during physiological aging in different mouse strains. more...
Organism:
Homo sapiens; Mus musculus; Rattus norvegicus
Type:
Methylation profiling by array
Platform:
GPL28271
168 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE190665
ID:
200190665
6.

Methylation studies in rhesus macaque

(Submitter supplied) DNA methylation data from rhesus macaque (Macaca mulatta) profiled on the mammalian methylation array (HorvathMammalMethylChip40) which focuses on highly conserved CpGs across mammalian species. We profiled n = 283 tissue samples (blood, skin, adipose, kidney, liver, lung, muscle, and cerebral cortex)
Organism:
Macaca mulatta; Homo sapiens; Mus musculus; Rattus norvegicus
Type:
Methylation profiling by array
Platform:
GPL28271
283 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE190664
ID:
200190664
7.

Methylation studies in common marmoset

(Submitter supplied) DNA methylation data from common marmosets (Callithrix jacchus) profiled on the mammalian methylation array (HorvathMammalMethylChip40) which focuses on highly conserved CpGs across mammalian species. Rapamycin study in a subset of animals.
Organism:
Homo sapiens; Callithrix jacchus; Rattus norvegicus; Mus musculus
Type:
Methylation profiling by array
Platform:
GPL28271
96 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE190663
ID:
200190663
8.

Methylation studies in strepsirrhini primates

(Submitter supplied) DNA methylation data from several primate species profiled on the mammalian methylation array (HorvathMammalMethylChip40) which focuses on highly conserved CpGs across mammalian species. We selected a total of 91 samples from animals representing 26 strepsirrhine species, in most cases, the entire lifespan, from immature (infant or juvenile) to senile stages: 68 samples from peripheral blood, 23 samples from skin Blood and skin samples from many different primates. more...
Organism:
Perodicticus potto; Microcebus murinus; Daubentonia madagascariensis; Xanthonycticebus pygmaeus; Varecia rubra; Eulemur rufus; Loris tardigradus; Nycticebus coucang; Mus musculus; Rattus norvegicus; Propithecus tattersalli; Galago moholi; Eulemur mongoz; Propithecus diadema; Eulemur flavifrons; Eulemur sanfordi; Otolemur crassicaudatus; Eulemur coronatus; Eulemur rubriventer; Eulemur fulvus collaris; Mirza zaza; Eulemur albifrons; Lemur catta; Cheirogaleus medius; Homo sapiens; Eulemur fulvus; Hapalemur griseus; Eulemur macaco; Propithecus coquereli
Type:
Methylation profiling by array
Platform:
GPL28271
91 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE190662
ID:
200190662
9.

Methylation studies in baboons.

(Submitter supplied) DNA methylation data from Papio hamadryas (baboons) profiled on the mammalian methylation array (HorvathMammalMethylChip40) which focuses on highly conserved CpGs across mammalian species. Seven tissue types (fetal cerebral cortex, adult cerebral cortex, cerebellum, adipose, heart, liver, and skeletal muscle) with ages ranging from late fetal life to 22.8 years of age.
Organism:
Papio hamadryas; Homo sapiens; Mus musculus; Rattus norvegicus
Type:
Methylation profiling by array
Platform:
GPL28271
325 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE190661
ID:
200190661
10.

Methylation studies in the vervet monkey

(Submitter supplied) DNA methylation data from vervet cerebral cortex, blood, and liver using highly conserved mammalian CpGs represented on the mammalian methylation array (HorvathMammalMethylChip40). We selected a total of 240 samples representing the entire vervet lifespan, from neonatal to senile stages: 144 samples from the peripheral blood, 48 samples from the liver, and 48 samples from the cortical brain area BA10.
Organism:
Rattus norvegicus; Mus musculus; Homo sapiens; Chlorocebus sabaeus
Type:
Methylation profiling by array
Platform:
GPL28271
240 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE190660
ID:
200190660
11.

Methylation studies in human cells N76

(Submitter supplied) An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from human cell types. n=17 human DNA samples from endothelial cells (n=13), embryonic stem cells (n=2) and skin (n=2).
Organism:
Rattus norvegicus; Homo sapiens; Mus musculus
Type:
Methylation profiling by array
Platform:
GPL28271
17 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE184224
ID:
200184224
12.

Methylation studies in plains zebras

(Submitter supplied) An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from many tissues of plains zebras (Equus quagga). Both whole blood (96) and remote biopsy (24) samples were obtained from a captive population of zebras maintained in a semi-wild state. After eliminating samples with low confidence for individual identity and age, we retained 76 blood samples and 20 biopsy samples, totaling 96 zebra samples.
Organism:
Rattus norvegicus; Homo sapiens; Mus musculus; Equus quagga burchellii
Type:
Methylation profiling by array
Platform:
GPL28271
118 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE184223
ID:
200184223
13.

Methylation studies in wild ass and Grevy's zebra

(Submitter supplied) An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from blood samples in two equid species: Somali wild ass and Grevy's zebra. n=12 blood samples
Organism:
Rattus norvegicus; Equus grevyi; Equus asinus somalicus; Homo sapiens; Mus musculus
Type:
Methylation profiling by array
Platform:
GPL28271
12 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE184222
ID:
200184222
14.

Methylation studies in human blood N94 N68

(Submitter supplied) An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from human tissue samples. n=144 EDTA blood samples and n=240 blood samples
Organism:
Rattus norvegicus; Mus musculus; Homo sapiens
Type:
Methylation profiling by array
Platform:
GPL28271
384 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE184221
ID:
200184221
15.

Methylation studies in human and mouse placenta

(Submitter supplied) An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from placental samples from two species: human and mouse. n=47 samples (n=24 placental samples from humans, 23 placental samples from mice).
Organism:
Rattus norvegicus; Homo sapiens; Mus musculus
Type:
Methylation profiling by array
Platform:
GPL28271
47 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE184220
ID:
200184220
16.

Methylation studies in multiple human tissues N66

(Submitter supplied) An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from human blood samples. n=92 brain samples (n=46 samples from cerebellum, n=46 from cerebral cortex).
Organism:
Mus musculus; Homo sapiens; Rattus norvegicus
Type:
Methylation profiling by array
Platform:
GPL28271
92 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE184218
ID:
200184218
17.

Methylation studies in roe deer

(Submitter supplied) An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from blood samples of roe deer n=94 blood samples
Organism:
Homo sapiens; Mus musculus; Capreolus capreolus; Rattus norvegicus
Type:
Methylation profiling by array
Platform:
GPL28271
94 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE184216
ID:
200184216
18.

Methylation studies in multiple human tissues N47

(Submitter supplied) An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from human blood samples. n=95 blood samples.
Organism:
Homo sapiens; Mus musculus; Rattus norvegicus
Type:
Methylation profiling by array
Platform:
GPL28271
95 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE184215
ID:
200184215
19.

Methylation studies in multiple human tissues N36

(Submitter supplied) An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from human tissue samples. n=96 tissues. Skin (n=72), keratinocyte (n=20), fibroblast (1), epidermis (2), dermis (1)
Organism:
Homo sapiens; Rattus norvegicus; Mus musculus
Type:
Methylation profiling by array
Platform:
GPL28271
96 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE184213
ID:
200184213
20.

Methylation studies in multiple human tissues N16

(Submitter supplied) An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from human postmortem tissue samples. n=661 tissues. Adipose, Lung, Blood, Bone marrow, Heart, Kidney, Liver, Spleen, Lymph node, Skeletal muscle, Pituitary gland,
Organism:
Homo sapiens; Mus musculus; Rattus norvegicus
Type:
Methylation profiling by array
Platform:
GPL28271
661 Samples
Download data: CSV, DOCX, IDAT
Series
Accession:
GSE184211
ID:
200184211
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