GEO DataSets

(Submitter supplied) Purpose: to compare newly transcribed and steady-state HCMV RNAs expressed in Kasumi-3 cells at 24 hr post-infection

Organism:

Human betaherpesvirus 5; Homo sapiens

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL18573 GPL24958

10 Samples

Download data: BIGWIG, TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Homo sapiens; Human betaherpesvirus 5

Type:

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

6 related Platforms

79 Samples

Download data: BIGWIG, TXT

(Submitter supplied) Purpose: to compare Pol2 occupancy of the host genome in HCMV infected and mock infected Kasumi-3 cells at 24 hours post infection and analyze Pol2 occupancy of the viral genome in GFP+ infected cells

Organism:

Homo sapiens; Human betaherpesvirus 5

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platforms:

GPL20301 GPL18573 GPL24958

8 Samples

Download data: BIGWIG

(Submitter supplied) Purpose: to compare Pol2 and H3K27Ac and H3K27me3 in HCMV infected Kasumi-3 cells at 4 and 24 hours post infection

Organism:

Human betaherpesvirus 5

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platforms:

GPL29601 GPL29602

24 Samples

Download data: BIGWIG

(Submitter supplied) Purpose: to compare H3K27Ac and H3K27me3 in HCMV infected and mock infected Kasumi-3 cells at 24 hours post infection and analyze H3K27Ac and H3K27me3 occupancy of the viral genome in GFP+ infected cells

Organism:

Homo sapiens; Human betaherpesvirus 5

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platforms:

GPL20301 GPL29603

21 Samples

Download data: BIGWIG

(Submitter supplied) Purpose: to compare host gene expression in HCMV infected and mock infected Kasumi-3 cells at 24 hours post infection and analyze viral chromatin accessibility

Organism:

Homo sapiens; Human betaherpesvirus 5

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platforms:

GPL18573 GPL24958

6 Samples

Download data: BIGWIG

(Submitter supplied) Purpose: to compare viral gene expression in HCMV infected Kasumi-3 cells at 4 and 24 hours post infection

Organism:

Human betaherpesvirus 5

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL29601 GPL29602

6 Samples

Download data: BIGWIG, TXT

(Submitter supplied) Purpose: to compare host gene expression in HCMV infected and mock infected Kasumi-3 cells at 24 hours post infection

Organism:

Human betaherpesvirus 5; Homo sapiens

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL24958 GPL18573

4 Samples

Download data: BIGWIG, TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Homo sapiens; Human betaherpesvirus 5

Type:

Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing

Platforms:

GPL29977 GPL24676

25 Samples

Download data: BIGWIG

(Submitter supplied) Purpose: to investigate the role of the HCMV immediate early genes in controlling the HCMV and cellular transcriptomes

Organism:

Homo sapiens; Human betaherpesvirus 5

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29977

4 Samples

Download data: BIGWIG

(Submitter supplied) Purpose: to investigate expression of HCMV and cellular RNAs at early times post-infection in a lytic model

Organism:

Homo sapiens; Human betaherpesvirus 5

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29977

2 Samples

Download data: BIGWIG

(Submitter supplied) Purpose: to investigate the human transcriptome in MRC5 fibroblasts

Organism:

Homo sapiens

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24676

3 Samples

Download data: BIGWIG

(Submitter supplied) Purpose: to investigate the role of the HCMV immediate early proteins in controlling the HCMV and cellular epigneomes during lytic infectioin

Organism:

Homo sapiens; Human betaherpesvirus 5

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL29977

16 Samples

Download data: BIGWIG

(Submitter supplied) Purpose: to investigate occupancy of Pol II and H3K27Ac on the HCMV and cellular genomes at early times post-infection in a lytic model

Organism:

Homo sapiens; Human betaherpesvirus 5

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL29977

8 Samples

Download data: BIGWIG

(Submitter supplied) Purpose: to investigate the epigeome of MRC5 fibroblasts

Organism:

Homo sapiens

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL24676

12 Samples

Download data: BIGWIG

(Submitter supplied) Using PRO-Seq, which profiles nascent transcripts, and a recently developed DFF-ChIP approach that informs on local chromatin environment, we show that IE2 controls viral gene transcription in three distinct capacities during late HCMV infection and reveal mechanisms involving direct binding of IE2 to viral DNA. IE2 represses a subset of viral promoters by binding within the target core promoter region, blocking the assembly preinitiation complexes (PICs). more...

Organism:

Homo sapiens

Type:

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL24676

14 Samples

Download data: BW

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Homo sapiens

Type:

Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing

Platforms:

GPL24676 GPL20301

38 Samples

Download data: BW

(Submitter supplied) To investigate the chromatin structure surrounding human RNA polymerase II (Pol II) transcription on host and viral genomes, chromatin immunoprecipitation (ChIP) was performed following digestion of HCMV infected primary human foreskin fibroblasts (HFFs) with DNA Fragmentation Factor (DFF). DFF is a human endonuclease responsible for cleaving between nucleosomes during apoptosis. We found that utilizing DFF as the front end for ChIP-Seq in place of sonication or Micrococcal nuclease (MNase) offered new insights into the connections between active transcription and the local chromatin on the host and that these connections were completely absent on the HCMV genome.

Organism:

Homo sapiens

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platforms:

GPL24676 GPL20301

25 Samples

Download data: BW

(Submitter supplied) Herpesvirus late promoters activate gene expression after viral DNA synthesis has begun. Alphaherpesviruses utilize a viral immediate-early protein to do this, whereas beta- and gammaherpesviruses primarily use a 6-member set of viral late-acting transcription factors (LTF) that are drawn to a TATT sequence in the late promoter. The betaherpesvirus, human cytomegalovirus (HCMV), produces three immediate-early 2 protein isoforms, IE2-86, IE2-60, IE2-40, in late infection, but whether they activate late viral promoters is unknown. more...

Organism:

Homo sapiens

Type:

Other

Platform:

GPL20301

22 Samples

Download data: BED, BW

(Submitter supplied) The establishment of latency is an essential step for the life-long persistent infection and pathogenesis of Kaposi’s sarcoma-associated herpesvirus (KSHV). While the KSHV genome is chromatin-free in the virions, the viral DNA in latently infected cells has a chromatin structure that is characterized by a specific pattern of activating and repressive histone modifications that ultimately promote latent gene expression while suppressing lytic gene expression. more...

Organism:

Homo sapiens; Human herpesvirus 8 type M

Type:

Genome binding/occupancy profiling by genome tiling array

Platform:

GPL17838

16 Samples

Download data: TXT