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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 02, 2023 |
| Title |
Control of cell identity and early neuronal fate commitment by the enhancer module of Integrator |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Other
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Apr 28, 2023 |
| Last update date |
Jul 04, 2024 |
| Contact name |
Alessandro Gardini |
| E-mail(s) |
agardini@wistar.org
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| Phone |
2158983755
|
| Organization name |
The Wistar Institute
|
| Lab |
Gardini Lab
|
| Street address |
3601 Spruce St, Room 230
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| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19104 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL30173 |
NextSeq 2000 (Homo sapiens) |
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| Samples (181)
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| GSM7246552 |
NPC, shLUC, H3K4me1, biol rep2 |
| GSM7246553 |
NPC, shSOX2, H3K27ac, biol rep1 |
| GSM7246554 |
NPC, shSOX2, H3K27ac, biol rep2 |
| GSM7246555 |
NPC, shSOX2, H3K4me1, biol rep1 |
| GSM7246556 |
NPC, shSOX2, H3K4me1, biol rep2 |
| GSM7246557 |
NPC, INTS10KO_C10, H3K27ac, biol rep4 |
| GSM7246558 |
NPC, INTS10KO_C10, H3K27ac, biol rep1 |
| GSM7246559 |
NPC, INTS10KO_C10, H3K4me1, biol rep4 |
| GSM7246560 |
NPC, INTS10KO_C10, H3K4me1, biol rep1 |
| GSM7246561 |
NPC, INTS10KO_C10, H3K27me3, biol rep1 |
| GSM7246562 |
NPC, INTS10KO_C10, H3K27me3, biol rep2 |
| GSM7246563 |
NPC, wt, H3K27ac, biol rep2 |
| GSM7246564 |
NPC, wt, H3K27ac, biol rep1 |
| GSM7246565 |
NPC, wt, H3K27me3, biol rep2 |
| GSM7246566 |
NPC, wt, H3K27me3, biol rep1 |
| GSM7246567 |
NPC, wt, H3K4me1, biol rep2 |
| GSM7246568 |
NPC, wt, H3K4me1, biol rep1 |
| GSM7246575 |
iPSC, WT, ATAC, biol rep1 |
| GSM7246576 |
NPC, WT, ATAC, biol rep1 |
| GSM7246577 |
NPC, WT, ATAC, biol rep2 |
| GSM7246578 |
NPC, INTS10HET2, ATAC, biol rep1 |
| GSM7246579 |
NPC, INTS10HET2, ATAC, biol rep2 |
| GSM7246580 |
iPSC, WT, INTS10, biol rep1 |
| GSM7246581 |
iPSC, WT, INTS10, biol rep2 |
| GSM7246582 |
iPSC, INTS10HET2, INTS10, biol rep1 |
| GSM7246583 |
iPSC, INTS10HET2, INTS10, biol rep2 |
| GSM7246584 |
NPC, WT, INTS10, biol rep1 |
| GSM7246585 |
NPC, WT, INTS10, biol rep2 |
| GSM7246586 |
NPC, INTS10HET2, INTS10, biol rep1 |
| GSM7246587 |
NPC, INTS10HET2, INTS10, biol rep2 |
| GSM7246588 |
Neuron, WT, INTS10, biol rep1 |
| GSM7246589 |
Neuron, WT, INTS10, biol rep2 |
| GSM7246590 |
SHSY5Y, WT, INTS10, biol rep1 |
| GSM7246591 |
SHSY5Y, WT, INTS10, biol rep2 |
| GSM7246592 |
iPSC, WT, INTS11, biol rep1 |
| GSM7246593 |
iPSC, WT, INTS11, biol rep2 |
| GSM7246594 |
iPSC, INTS10HET2, INTS11, biol rep1 |
| GSM7246595 |
iPSC, INTS10HET2, INTS11, biol rep2 |
| GSM7246596 |
NPC, WT, INTS11, biol rep1 |
| GSM7246597 |
NPC, WT, INTS11, biol rep2 |
| GSM7246598 |
NPC, INTS10HET2, INTS11, biol rep1 |
| GSM7246599 |
NPC, INTS10HET2, INTS11, biol rep2 |
| GSM7246600 |
Neuron, WT, INTS11, biol rep1 |
| GSM7246601 |
Neuron, WT, INTS11, biol rep2 |
| GSM7246602 |
SHSY5Y, WT, INTS11, biol rep1 |
| GSM7246603 |
SHSY5Y, WT, INTS11, biol rep2 |
| GSM7246604 |
iPSC, WT, INTS13, biol rep1 |
| GSM7246605 |
iPSC, WT, INTS13, biol rep2 |
| GSM7246606 |
iPSC, INTS10HET2, INTS13, biol rep1 |
| GSM7246607 |
iPSC, INTS10HET2, INTS13, biol rep2 |
| GSM7246608 |
NPC, WT, INTS13, biol rep1 |
| GSM7246609 |
NPC, WT, INTS13, biol rep2 |
| GSM7246610 |
NPC, INTS10HET2, INTS13, biol rep1 |
| GSM7246611 |
NPC, INTS10HET2, INTS13, biol rep2 |
| GSM7246612 |
Neuron, WT, INTS13, biol rep1 |
| GSM7246613 |
Neuron, WT, INTS13, biol rep2 |
| GSM7246614 |
SHSY5Y, WT, INTS13, biol rep1 |
| GSM7246615 |
SHSY5Y, WT, INTS13, biol rep2 |
| GSM7246616 |
iPSC, WT, RNAPII, biol rep1 |
| GSM7246617 |
iPSC, WT, RNAPII, biol rep2 |
| GSM7246618 |
iPSC, INTS10HET2, RNAPII, biol rep1 |
| GSM7246619 |
iPSC, INTS10HET2, RNAPII, biol rep2 |
| GSM7246620 |
NPC, WT, RNAPII, biol rep1 |
| GSM7246621 |
NPC, WT, RNAPII, biol rep2 |
| GSM7246622 |
NPC, INTS10HET2, RNAPII, biol rep1 |
| GSM7246623 |
NPC, INTS10HET2, RNAPII, biol rep3 |
| GSM7246624 |
Neuron, WT, RNAPII, biol rep1 |
| GSM7246625 |
Neuron, WT, RNAPII, biol rep2 |
| GSM7246626 |
SHSY5Y, WT, RNAPII, biol rep1 |
| GSM7246627 |
SHSY5Y, WT, RNAPII, biol rep2 |
| GSM7246628 |
iPSC, WT, H3K27ac, biol rep1 |
| GSM7246629 |
iPSC, WT, H3K27ac, biol rep2 |
| GSM7246630 |
iPSC, INTS10HET2, H3K27ac, biol rep1 |
| GSM7246631 |
iPSC, INTS10HET2, H3K27ac, biol rep2 |
| GSM7246632 |
NPC, WT, H3K27ac, biol rep1 |
| GSM7246633 |
NPC, WT, H3K27ac, biol rep2 |
| GSM7246634 |
NPC, INTS10HET2, H3K27ac, biol rep1 |
| GSM7246635 |
NPC, INTS10HET2, H3K27ac, biol rep2 |
| GSM7246636 |
Neuron, WT, H3K27ac, biol rep1 |
| GSM7246637 |
Neuron, WT, H3K27ac, biol rep2 |
| GSM7246638 |
iPSC, WT, H3K4me1, biol rep1 |
| GSM7246639 |
iPSC, WT, H3K4me1, biol rep2 |
| GSM7246640 |
iPSC, INTS10HET2, H3K4me1, biol rep1 |
| GSM7246641 |
iPSC, INTS10HET2, H3K4me1, biol rep2 |
| GSM7246642 |
NPC, WT, H3K4me1, biol rep1 |
| GSM7246643 |
NPC, WT, H3K4me1, biol rep2 |
| GSM7246644 |
NPC, INTS10HET2, H3K4me1, biol rep1 |
| GSM7246645 |
NPC, INTS10HET2, H3K4me1, biol rep2 |
| GSM7246646 |
Neuron, WT, H3K4me1, biol rep1 |
| GSM7246647 |
Neuron, WT, H3K4me1, biol rep2 |
| GSM7246648 |
NPC, WT, H3K27me3, biol rep1 |
| GSM7246649 |
NPC, INTS10HET2, H3K27me3, biol rep1 |
| GSM7246650 |
iPSC, WT, SOX2, biol rep1 |
| GSM7246651 |
iPSC, WT, SOX2, biol rep2 |
| GSM7246652 |
NPC, WT, SOX2, biol rep1 |
| GSM7246653 |
NPC, WT, SOX2, biol rep2 |
| GSM7246654 |
NPC, WT, SOX2, biol rep3 |
| GSM7246655 |
NPC, INTS10HET2, SOX2, biol rep1 |
| GSM7246656 |
NPC, INTS10HET2, SOX2, biol rep2 |
| GSM7246657 |
NPC, INTS10HET2, SOX2, biol rep3 |
| GSM7246729 |
NPC, WT, HiC, biol rep1 |
| GSM7246730 |
NPC, INTS10HET2, HiC, biol rep1 |
| GSM7246737 |
iPSC ,INTS10HET1, Biol rep 1 |
| GSM7246738 |
iPSC ,INTS10HET1, Biol rep 3 |
| GSM7246739 |
iPSC ,INTS10HET1, Biol rep 4 |
| GSM7246740 |
iPSC ,INTS10HET2, Biol rep 1 |
| GSM7246741 |
iPSC ,INTS10HET2, Biol rep 3 |
| GSM7246742 |
iPSC ,INTS10HET2, Biol rep 4 |
| GSM7246743 |
iPSC ,WT, Biol rep 1 |
| GSM7246744 |
iPSC ,WT, Biol rep 3 |
| GSM7246745 |
iPSC ,WT, Biol rep 4 |
| GSM7246746 |
Neuron ,INTS10HET1, Biol rep 1 |
| GSM7246747 |
Neuron ,INTS10HET1, Biol rep 2 |
| GSM7246748 |
Neuron ,INTS10HET1, Biol rep 3 |
| GSM7246749 |
Neuron ,INTS10HET2, Biol rep 1 |
| GSM7246750 |
Neuron ,INTS10HET2, Biol rep 2 |
| GSM7246751 |
Neuron ,INTS10HET2, Biol rep 3 |
| GSM7246752 |
Neuron ,WT, Biol rep 1 |
| GSM7246753 |
Neuron ,WT, Biol rep 2 |
| GSM7246754 |
Neuron ,WT, Biol rep 3 |
| GSM7246755 |
NPC_p0 ,INTS10HET1, Biol rep 1 |
| GSM7246756 |
NPC_p0 ,INTS10HET1, Biol rep 2 |
| GSM7246757 |
NPC_p0 ,INTS10HET1, Biol rep 3 |
| GSM7246758 |
NPC_p0 ,INTS10HET2, Biol rep 1 |
| GSM7246759 |
NPC_p0 ,INTS10HET2, Biol rep 2 |
| GSM7246760 |
NPC_p0 ,INTS10HET2, Biol rep 3 |
| GSM7246761 |
NPC_p0 ,WT, Biol rep 1 |
| GSM7246762 |
NPC_p0 ,WT, Biol rep 3 |
| GSM7246763 |
NPC_p0 ,WT, Biol rep 4 |
| GSM7246764 |
NPC_p3 ,INTS10HET1, Biol rep 1 |
| GSM7246765 |
NPC_p3 ,INTS10HET1, Biol rep 2 |
| GSM7246766 |
NPC_p3 ,INTS10HET1, Biol rep 3 |
| GSM7246767 |
NPC_p3 ,INTS10HET2, Biol rep 2 |
| GSM7246768 |
NPC_p3 ,INTS10HET2, Biol rep 3 |
| GSM7246769 |
NPC_p3 ,INTS10HET2, Biol rep 4 |
| GSM7246770 |
NPC_p3 ,shLUC, Biol rep 1 |
| GSM7246771 |
NPC_p3 ,shLUC, Biol rep 4 |
| GSM7246772 |
NPC_p3 ,shSOX2, Biol rep 1 |
| GSM7246773 |
NPC_p3 ,shSOX2, Biol rep 4 |
| GSM7246774 |
NPC_p3 ,WT, Biol rep 1 |
| GSM7246775 |
NPC_p3 ,WT, Biol rep 2 |
| GSM7246776 |
NPC_p3 ,WT, Biol rep 3 |
| GSM7246777 |
ReN ,INTS10HET1, Biol rep 1 |
| GSM7246778 |
ReN ,INTS10HET1, Biol rep 2 |
| GSM7246779 |
ReN ,WT, Biol rep 1 |
| GSM7246780 |
ReN ,WT, Biol rep 2 |
| GSM7246781 |
ReN ,shINTS10_2, Biol rep 1 |
| GSM7246782 |
ReN ,shINTS10_2, Biol rep 2 |
| GSM7246783 |
ReN ,shLUC, Biol rep 1 |
| GSM7246784 |
ReN ,shLUC, Biol rep 2 |
| GSM7246785 |
SHSY5Y ,INTS10KOC10, Biol rep 1 |
| GSM7246786 |
SHSY5Y ,INTS10KOC10, Biol rep 2 |
| GSM7246787 |
SHSY5Y ,INTS10KOC24, Biol rep 1 |
| GSM7246788 |
SHSY5Y ,INTS10KOC24, Biol rep 2 |
| GSM7246789 |
SHSY5Y ,INTS10KOC37, Biol rep 1 |
| GSM7246790 |
SHSY5Y ,INTS10KOC37, Biol rep 2 |
| GSM7246791 |
SHSY5Y ,WT, Biol rep 1 |
| GSM7246792 |
SHSY5Y ,WT, Biol rep 2 |
| GSM7246811 |
NPC, WT, replicate 1, scRNAseq |
| GSM7246812 |
NPC, INTS10HET2, replicate 1, scRNAseq |
| GSM8348315 |
NPC_p3 ,shINTS10, Biol rep 1 |
| GSM8348316 |
NPC_p3 ,shINTS10, Biol rep 2 |
| GSM8348317 |
NPC_p3 ,shINTS10, Biol rep 3 |
| GSM8348318 |
NPC_p3 ,shINTS10, Biol rep 4 |
| GSM8348319 |
NPC_p3 ,shLUC, Biol rep 5 |
| GSM8348320 |
NPC_p3 ,shLUC, Biol rep 6 |
| GSM8348321 |
NPC_p3 ,shLUC, Biol rep 7 |
| GSM8348322 |
NPC_p3 ,shLUC, Biol rep 8 |
| GSM8348323 |
NPC, WT, ZMYND8, biol rep1 |
| GSM8348330 |
NPC, INTS10het2, H3K27me, biol rep1 |
| GSM8348331 |
NPC, INTS10het2, H3K27me, biol rep2 |
| GSM8348332 |
NPC, INTS10HET2tetinduciblesox2DOX1day, SOX2, biol rep1 |
| GSM8348333 |
NPC, INTS10HET2tetinduciblesox2control, SOX2, biol rep1 |
| GSM8348334 |
NPC, WT, H3K27me, biol rep1 |
| GSM8348335 |
NPC, WT, H3K27me, biol rep2 |
| GSM8348336 |
NPC, WT, SOX2, CT biol rep1 |
| GSM8348337 |
NPC, WTsox1enhancerdCAS9DOX1day, H3K27ac, biol rep1 |
| GSM8348338 |
NPC, WTsox1enhancerdCAS9control, H3K27ac, biol rep1 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE230889 |
Control of cell identity and early neuronal fate commitment by the enhancer module of Integrator [CUT&TAG] |
| GSE230893 |
Control of cell identity and early neuronal fate commitment by the enhancer module of Integrator [ATAC-Seq] |
| GSE230894 |
Control of cell identity and early neuronal fate commitment by the enhancer module of Integrator [ChIP-Seq] |
| GSE230914 |
Control of cell identity and early neuronal fate commitment by the enhancer module of Integrator [Hi-C] |
| GSE230917 |
Control of cell identity and early neuronal fate commitment by the enhancer module of Integrator [RNA-Seq] |
| GSE230922 |
Control of cell identity and early neuronal fate commitment by the enhancer module of Integrator [scRNA-Seq] |
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| Relations |
| BioProject |
PRJNA962916 |
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