| PRJNA728440 | SRA or Trace | 2019-nCoV (SARS-CoV-2) Wastewater Surveillance in Pune city | 2019-nCoV (SARS-CoV-2) Wastewater Surveillance in Pune city (CSIR-National Chemical Laboratory,...) |
| PRJEB36487 | No data links | 2019_nCoV data generated by BGI | 2019_nCoV coronavirus data set. Collection of new coronavirus samples and assembly sequences. Data first released by CNGBdb (https://db.cngb.org/search/project/CNP0000881) (Beijing Genome Institute) |
| PRJNA788068 | SRA or Trace | 20211209_2947345NS | 20211209_2947345NS (HealthQuest Esoterics) |
| PRJNA669945 | SRA or Trace | 69 Palestine SARS-CoV-2 isolates | 69 Palestine SARS-CoV-2 isolates (ucl) |
| PRJNA660569 | SRA or Trace | A Mouse Model of SARS-CoV-2 induced Acute Lung Injury (ALI) in Standard Laboratory Mice | A Mouse Model of SARS-CoV-2 induced Acute Lung Injury (ALI) in Standard Laboratory Mice (UNC Chapel Hill) |
| PRJNA798904 | SRA or Trace | A case of paucisymptomatic Delta and Omicron SARS-CoV-2 variants co-infection | A case of paucisymptomatic Delta and Omicron SARS-CoV-2 variants co-infection (University of Genoa) |
| PRJNA638938 | SRA or Trace | A comprehensive benchmarking study of SARS-CoV-2 whole-genome sequencing using multiple library construction protocols and patient samples | A comprehensive benchmarking study of SARS-CoV-2 whole-genome sequencing using multiple library construction protocols and patient samples (Loma Linda University) |
| PRJNA754424 | SRA or Trace | A longitudinal cohort study examining SARS-CoV-2 prevalence in the feces of very young children | A longitudinal cohort study examining SARS-CoV-2 prevalence in the feces of very young children (Children's Hospital of Philadelphia) |
| PRJNA707404 | SRA or Trace | A versatile reverse genetics platform for pandemic SARS-CoV-2 and other positive-strand RNA viruses. | A versatile reverse genetics platform for pandemic SARS-CoV-2 and other positive-strand RNA viruses. (University of Queensland) |
| PRJNA682735 | SRA or Trace | Academic Consortium project on SARS-CoV-2 genome sequencing | Academic Consortium project on SARS-CoV-2 genome sequencing (Academic Consortium) |
| PRJNA745169 | SRA or Trace | Acute SARS-CoV-2 infection is associated with an expansion of bacteria pathogens in the nose including Pseudomonas aeruginosa | Acute SARS-CoV-2 infection is associated with an expansion of bacteria pathogens in the nose including Pseudomonas aeruginosa (University of California,...) |
| PRJNA816258 | SRA or Trace | Adaptive sequencing for viral infection | Adaptive sequencing for viral infection (China Simceredx Jiangsu) |
| PRJNA780564 | SRA or Trace | AdvantaCovidSeq | AdvantaCovidSeq (Advanta Analytical Laboratories) |
| PRJNA753679 | SRA or Trace | Alternative low cost approaches of Complete Genome sequencing of SARS CoV-2 using Ion Ampliseq Technology | Alternative low cost approaches of Complete Genome sequencing of SARS CoV-2 using Ion Ampliseq Technology (Jashore University of Science...) |
| PRJNA674624 | SRA or Trace | Amplicon Sequencing of SARS-CoV-2 for virus detection and sequence analyzes in humans and domestic animals | Amplicon Sequencing of SARS-CoV-2 for virus detection and sequence analyzes in humans and domestic animals (UFBA) |
| PRJNA735936 | SRA or Trace | Amplicon based sequencing of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) isolated from 16 wastewater catchments in Jefferson County, Kentucky USA over a multi-week period | Amplicon based sequencing of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) isolated from 16 wastewater catchments in Jefferson County, Kentucky USA over a multi-week period (University of Louisville) |
| PRJNA738539 | SRA or Trace | Ampliseq sequencing of SARS-CoV-2 genomic and subgenomic RNA and the host response in diagnostic nasopharyngeal swabs from Victoria Australia | Ampliseq sequencing of SARS-CoV-2 genomic and subgenomic RNA and the host response in diagnostic nasopharyngeal swabs from Victoria Australia (Deakin University) |
| PRJNA796188 | SRA or Trace | Antibody Escape VSV-SARS-CoV-2-S RNA Genome Sequencing | Antibody Escape VSV-SARS-CoV-2-S RNA Genome Sequencing (Shanghai Jiao Tong University) |
| PRJNA750251 | SRA or Trace | Assessing the consistency of multi-laboratory sequencing of matched SARS-CoV-2 isolates | Assessing the consistency of multi-laboratory sequencing of matched SARS-CoV-2 isolates (University of New South Wales) |
| PRJNA803551 | SRA or Trace | Assessing within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat | Assessing within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat (Fred Hutchinson Cancer Research...) |
| PRJNA810429 | SRA or Trace | Automated Library Construction and Analysis Pipelines for High-throughput ARTIC Amplicon SARS-CoV-2 Sequencing on MinION | Automated Library Construction and Analysis Pipelines for High-throughput ARTIC Amplicon SARS-CoV-2 Sequencing on MinION (BCCAGSC) |
| PRJNA859660 | SRA or Trace | Bamlanivimab_targeted_S-gene_sequencing | Bamlanivimab_targeted_S-gene_sequencing (Brigham & Women's Hospital) |
| PRJNA831650 | SRA or Trace | Bangladesh SARS-CoV-2 genome sequencing | Bangladesh SARS-CoV-2 genome sequencing (Hokkaido university) |
| PRJNA704235 | SRA or Trace | Brasilian P1 SARS-CoV-2 strain | Brasilian P1 SARS-CoV-2 strain (Istituto Zooprofilattico...) |
| PRJNA796570 | SRA or Trace | Breakthrough gastrointestinal COVID and intra-host evolution consequent to combination monoclonal antibody prophylaxis | Breakthrough gastrointestinal COVID and intra-host evolution consequent to combination monoclonal antibody prophylaxis (Tulane National Primate Research...) |
| PRJNA634194 | SRA or Trace | Broad inhibition of coronavirus entry by a lipid-conjugated peptide derived from the SARS-CoV-2 Spike Protein HRC Domain | Broad inhibition of coronavirus entry by a lipid-conjugated peptide derived from the SARS-CoV-2 Spike Protein HRC Domain (University of Washington) |
| PRJNA812959 | SRA or Trace | Building Wildlife Surveillance Capacity for Enhanced Pandemic Preparedness | Building Wildlife Surveillance Capacity for Enhanced Pandemic Preparedness (Canadian Food Inspection...) |
| PRJNA750263 | SRA or Trace | CAGABLEA | CAGABLEA (CNRS) |
| PRJNA758764 | SRA or Trace | COVA1-18 neutralizing antibody protects against SARS-CoV-2 in three preclinical models | COVA1-18 neutralizing antibody protects against SARS-CoV-2 in three preclinical models (LifeandSoft) |
| PRJNA856680 | SRA or Trace | COVID RNAseq | COVID RNAseq (Battelle Memorial Institute) |
| PRJNA673096 | SRA or Trace | COVID-19 | COVID-19 (Delaware Public Health Lab) |
| PRJEB46220 | SRA or Trace | COVID-19 Genomics Argentina INEI-ANLIS | Genomic surveillance of SARS-CoV2 in Argentina (ANLIS Malbran) |
| PRJEB37886 | SRA or Trace | COVID-19 Genomics UK (COG-UK) consortium | COVID-19 Genomics UK (COG-UK) consortium (COVID-19 Genomics UK Consortium) |
| PRJEB46741 | No data links | COVID-19 Health Surveillance FVG-0 | COVID-19 Health Surveillance FVG-0 (federica bazzocchi) |
| PRJEB39761 | SRA or Trace | COVID-HUB-PL | Sequencing of SARS-CoV-2 genomes from coronavirus infected patients from Poland (COVID-HUB-PL) |
| PRJNA717396 | SRA or Trace | Catching SARS-CoV-2 by sequence hybridization | Catching SARS-CoV-2 by sequence hybridization (Bundeswehr Institute of Microbiology) |
| PRJNA719737 | SRA or Trace | Change of dominant strain during dual SARS-CoV-2 infection | Change of dominant strain during dual SARS-CoV-2 infection (Central Research Institute...) |
| PRJNA776394 | SRA or Trace | Changing predominant SARS-CoV-2 lineages drive successive COVID-19 waves in Malaysia, February 2020 to March 2021 | Changing predominant SARS-CoV-2 lineages drive successive COVID-19 waves in Malaysia, February 2020 to March 2021 (Faculty of Medicne, University...) |
| PRJNA747050 | SRA or Trace | Chicago Coronavirus Assessment Network by Molecular Pathology Laboratory at the University of Illinois at Chicago and funded by Walder Foundation | Chicago Coronavirus Assessment Network by Molecular Pathology Laboratory at the University of Illinois at Chicago and funded by Walder Foundation (Igenbio, Inc) |
| PRJNA803960 | SRA or Trace | Chronic Coronavirus sequencing | Chronic Coronavirus sequencing (Tel Aviv University) |
| PRJNA766078 | SRA or Trace | Clinical Nasopharyngeal Swabs and Inactivated SARS-CoV-2 Virions Raw sequence reads | Clinical Nasopharyngeal Swabs and Inactivated SARS-CoV-2 Virions Raw sequence reads (University of British Columbia) |
| PRJNA632475 | SRA or Trace | Clinical benefit of remdesivir treatment in rhesus macaques infected with SARS-CoV-2 | Clinical benefit of remdesivir treatment in rhesus macaques infected with SARS-CoV-2 (NIAID) |
| PRJNA726840 | SRA or Trace | Coding-Complete Genome Sequences of 11 SARS-CoV-2 B.1.1.7 and B.1.351 variants from Metro Manila, Philippines | Coding-Complete Genome Sequences of 11 SARS-CoV-2 B.1.1.7 and B.1.351 variants from Metro Manila, Philippines (AFRIMS) |
| PRJNA757144 | SRA or Trace | Coding-Complete Genome Sequences of Alpha and Delta SARS-CoV-2 variants from Kamphaeng Phet Province, Thailand from May to July 2021 | Coding-Complete Genome Sequences of Alpha and Delta SARS-CoV-2 variants from Kamphaeng Phet Province, Thailand from May to July 2021 (AFRIMS) |
| PRJNA672811 | SRA or Trace | Coding-Complete SARS-CoV-2 genome sequences originating from eight new Israeli patient isolates | Coding-Complete SARS-CoV-2 genome sequences originating from eight new Israeli patient isolates (Israel Institute for Biological...) |
| PRJNA659362 | SRA or Trace | Comparative analysis of coronavirus genomic RNA structure reveals conservation in SARS-like coronaviruses | Comparative analysis of coronavirus genomic RNA structure reveals conservation in SARS-like coronaviruses (UNC Chapel Hill) |
| PRJNA837611 | SRA or Trace | Comparative assessment of SARS Coronavirus-2 variants in the ferret model | Comparative assessment of SARS Coronavirus-2 variants in the ferret model (Centers for Disease Control...) |
| PRJNA720240 | SRA or Trace | Complete Genome Sequences of SARS-CoV-2 isolated from Egyptian Patients | Complete Genome Sequences of SARS-CoV-2 isolated from Egyptian Patients (National Research Centre,) |
| PRJNA657938 | SRA or Trace | Complete Genome Sequencing of SARS-COV-2 Strains Isolated From Bangladesh | Complete Genome Sequencing of SARS-COV-2 Strains Isolated From Bangladesh (BCSIR) |
| PRJNA657985 | SRA or Trace | Complete Genome Sequencing of SARS-COV-2 Strains Isolated From Bangladesh | Complete Genome Sequencing of SARS-COV-2 Strains Isolated From Bangladesh (BCSIR) |
| PRJNA658211 | SRA or Trace | Complete Genome Sequencing of SARS-COV-2 Strains Isolated From Bangladesh | Complete Genome Sequencing of SARS-COV-2 Strains Isolated From Bangladesh (BCSIR) |
| PRJNA817433 | SRA or Trace | Complete coding sequence of SARS-CoV-2 strain from Omicron (B.1.1.529+BA.1) Variant detected in Morocco | Complete coding sequence of SARS-CoV-2 strain from Omicron (B.1.1.529+BA.1) Variant detected in Morocco (National Consortium on Biomedical...) |
| PRJEB54706 | SRA or Trace | Complete escape of SARS-CoV-2 from dual monoclonal antibody therapy in a patient with acquired immunodeficiency | Intra-host evolution of SARS-CoV-2 from REGN-COV (Institute for Virology Freiburg) |
| PRJNA627354 | SRA or Trace | Complete genome sequence of SARS-CoV-2 from a U.S. zoological collection | Complete genome sequence of SARS-CoV-2 from a U.S. zoological collection (USDA National Veterinary...) |
| PRJNA692972 | SRA or Trace | Complete genome sequence of SARS-CoV-2 strain B.1.1.7 | Complete genome sequence of SARS-CoV-2 strain B.1.1.7 (Cornell University) |
| PRJNA633443 | SRA or Trace | Coronavirus Treatment | Coronavirus Treatment (UMR "Emergence des Pathologies...) |
| PRJNA809434 | SRA or Trace | Daily sampling of early SARS-CoV-2 infection reveals substantial heterogeneity in infectiousness | Daily sampling of early SARS-CoV-2 infection reveals substantial heterogeneity in infectiousness (University of Illinois at...) |
| PRJNA774781 | SRA or Trace | De novo emergence of a remdesivir resistance mutation during treatment of a persistent SARS-CoV-2 infection in an immunocompromised patient | De novo emergence of a remdesivir resistance mutation during treatment of a persistent SARS-CoV-2 infection in an immunocompromised patient (University of Washington) |
| PRJNA735752 | SRA or Trace | De novo sequencing of 48 SARS-CoV-2 isolates using PACBIO sequencing | De novo sequencing of 48 SARS-CoV-2 isolates using PACBIO sequencing (University of Louisville) |
| PRJNA770094 | SRA or Trace | Deep mutational scanning of the RBD from SARS-CoV-2 variant lineages using yeast display of barcoded libraries | Deep mutational scanning of the RBD from SARS-CoV-2 variant lineages using yeast display of barcoded libraries (Fred Hutchinson Cancer Research...) |
| PRJNA615319 | SRA or Trace | Deep sequencing of recombinant SARS-CoV-2 (rSARS-CoV-2) and SARS-CoV-2-GFP (rSARS-CoV-2-GFP) | Deep sequencing of recombinant SARS-CoV-2 (rSARS-CoV-2) and SARS-CoV-2-GFP (rSARS-CoV-2-GFP) (Institute of Virology and...) |
| PRJNA639864 | SRA or Trace | Deep-sequencing analysis of SARS-CoV-2 viruses | Deep-sequencing analysis of SARS-CoV-2 viruses (Qatar University) |
| PRJNA686083 | SRA or Trace | DeepSpike | DeepSpike (Fondazione IRCCS Policlinico...) |
| PRJNA829976 | SRA or Trace | Delta spike P681R mutation enhances SARS-CoV-2 fitness over Alpha variant | Delta spike P681R mutation enhances SARS-CoV-2 fitness over Alpha variant (UTMB) |
| PRJNA701790 | SRA or Trace | Demystifying SARS-CoV-2 from samples of COVID-19 patients of Chattogram, Bangladesh through whole genome sequencing | Demystifying SARS-CoV-2 from samples of COVID-19 patients of Chattogram, Bangladesh through whole genome sequencing (University of Chittagong) |
| PRJNA708134 | SRA or Trace | Detection and genome sequencing of SARS-CoV-2 belonging to the B.1.1.7 lineage in the Philippines | Detection and genome sequencing of SARS-CoV-2 belonging to the B.1.1.7 lineage in the Philippines (Philippine Genome Center) |
| PRJNA817870 | SRA or Trace | Detection and prevalence of SARS-CoV-2 co-infections during the Omicron variant circulation, France, December 2021 - February 2022 | Detection and prevalence of SARS-CoV-2 co-infections during the Omicron variant circulation, France, December 2021 - February 2022 (Institut des agents infectieux) |
| PRJNA817806 | SRA or Trace | Detection and prevalence of SARS-CoV-2 co-infections during the Omicron variant circulation, France, December 2021 - February 2022 | Detection and prevalence of SARS-CoV-2 co-infections during the Omicron variant circulation, France, December 2021 - February 2022 (Institut des agents infectieux) |
| PRJNA853723 | SRA or Trace | Detection and prevalence of SARS-CoV-2 co-infections during the Omicron variant circulation, France, December 2021 - February 2022 | Detection and prevalence of SARS-CoV-2 co-infections during the Omicron variant circulation, France, December 2021 - February 2022 (genEPII) |
| PRJNA689221 | SRA or Trace | Detection of SARS-CoV-2 with VirCapSeq capture on wastewater metagenomic samples | Detection of SARS-CoV-2 with VirCapSeq capture on wastewater metagenomic samples (Universitat de Barcelona) |
| PRJNA608224 | SRA or Trace | Direct RNA sequencing and early evolution of SARS-CoV-2 | Direct RNA sequencing and early evolution of SARS-CoV-2 (University of Melbourne) |
| PRJNA780672 | SRA or Trace | Distribution of SARS-CoV-2 in transgenic mice with inducible ubiquitous expression of hACE2 after intranasal infection | Distribution of SARS-CoV-2 in transgenic mice with inducible ubiquitous expression of hACE2 after intranasal infection (State Research Center of...) |
| PRJNA772763 | SRA or Trace | Early reinfection by Mu and Gamma variants of SARS-CoV-2 | Early reinfection by Mu and Gamma variants of SARS-CoV-2 (Universidad de Manizales...) |
| PRJNA784099 | SRA or Trace | Enhanced fitness of SARS-CoV-2 variant of concern Alpha, but not Beta | Enhanced fitness of SARS-CoV-2 variant of concern Alpha, but not Beta (Institute of Virology and...) |
| PRJEB45736 | No data links | Enhanced fitness of SARS-CoV-2 variants of concern | Enhanced fitness of SARS-CoV-2 variant of concern B.1.1.7, but not B.1.351, in animal models (Friedrich-Loeffler-Institut) |
| PRJNA638211 | SRA or Trace | Epidemiological and Genomic Analysis of SARS-CoV-2 in Ten Patients from a Mid-sized City outside of Hubei, China in the Early Phase of the COVID-19 Outbreak | Epidemiological and Genomic Analysis of SARS-CoV-2 in Ten Patients from a Mid-sized City outside of Hubei, China in the Early Phase of the COVID-19 Outbreak (Three Coin Analytics Inc.) |
| PRJNA774834 | SRA or Trace | Epidemiology and Genetic characterization of SARS-CoV-2 in Bhutan from March 2020 to August 2021 | Epidemiology and Genetic characterization of SARS-CoV-2 in Bhutan from March 2020 to August 2021 (AFRIMS) |
| PRJNA685400 | SRA or Trace | Escape from neutralizing antibodies by SARS-CoV-2 spike protein variants | Escape from neutralizing antibodies by SARS-CoV-2 spike protein variants (The Rockefeller University) |
| PRJNA649101 | SRA or Trace | Evaluation of NGS-based approaches for SARS-CoV-2 whole genome characterization | Evaluation of NGS-based approaches for SARS-CoV-2 whole genome characterization (Institut des agents infectieux) |
| PRJNA728463 | SRA or Trace | Evidence for increased breakthrough rates of SARS-CoV-2 variants of concern in BNT162b2 mRNA vaccinated individuals | Evidence for increased breakthrough rates of SARS-CoV-2 variants of concern in BNT162b2 mRNA vaccinated individuals (Tel Aviv University) |
| PRJNA728728 | SRA or Trace | Evidence of vaccine escape by B1.351 during the second wave of COVID-19 in Bangladesh | Evidence of vaccine escape by B1.351 during the second wave of COVID-19 in Bangladesh (Dhaka University) |
| PRJNA698079 | SRA or Trace | FAST-TRACK COVID | FAST-TRACK COVID (ARGO Open Lab Platform for...) |
| PRJNA648821 | SRA or Trace | Favipiravir treatment in Vivo on Hamster following SARS Cov2 infection | Favipiravir treatment in Vivo on Hamster following SARS Cov2 infection (UMR "Emergence des Pathologies...) |
| PRJNA739578 | SRA or Trace | First SARS-CoV-2 Tunisian cases | First SARS-CoV-2 Tunisian cases (Institut Pasteur de Tunis) |
| PRJNA689203 | SRA or Trace | First Whole Genome Sequence of a SARS-CoV-2 Isolate from Iraq | First Whole Genome Sequence of a SARS-CoV-2 Isolate from Iraq (ARGO Open Lab Platform for...) |
| PRJNA694865 | SRA or Trace | Full genome sequencing and phylogenetic analysis of SARS-CoV-2 cases in Iran | Full genome sequencing and phylogenetic analysis of SARS-CoV-2 cases in Iran (Razi Vaccine and Serum Research...) |
| PRJNA647529 | SRA or Trace | Full genome viral sequences inform patterns of SARS-CoV-2 spread into and within Israel | Full genome viral sequences inform patterns of SARS-CoV-2 spread into and within Israel (Tel Aviv University) |
| PRJNA678001 | SRA or Trace | Generation and Characterization of recombinant SARS-CoV-2 expressing reporter genes | Generation and Characterization of recombinant SARS-CoV-2 expressing reporter genes (Texas Biomedical Research...) |
| PRJNA774918 | SRA or Trace | Genetic Characterization of SARS-CoV-2 in Kamphaeng Phet Province, Thailand | Genetic Characterization of SARS-CoV-2 in Kamphaeng Phet Province, Thailand (AFRIMS) |
| PRJNA735311 | SRA or Trace | Genome SARS-CoV-2 sequencing from Iraq | Genome SARS-CoV-2 sequencing from Iraq (Al Muthanna University) |
| PRJNA748832 | SRA or Trace | Genome SARS-CoV-2 sequencing from Iraq | Genome SARS-CoV-2 sequencing from Iraq (Al Muthanna University) |
| PRJNA738286 | SRA or Trace | Genome SARS-CoV-2 sequencing from Iraq | Genome SARS-CoV-2 sequencing from Iraq (Al Muthanna University) |
| PRJNA702998 | SRA or Trace | Genome Sequence of SARS CoV-2 variant B.1.1.7 501Y.V1 from Dhaka, Bangladesh | Genome Sequence of SARS CoV-2 variant B.1.1.7 501Y.V1 from Dhaka, Bangladesh (International Centre for...) |
| PRJNA658490 | SRA or Trace | Genome Sequence of SARS-CoV-2 Siena-1 viral isolate | Genome Sequence of SARS-CoV-2 Siena-1 viral isolate (University of Siena) |
| PRJNA659293 | SRA or Trace | Genome Sequences of Twenty-three SARS-CoV-2 Strains Isolated in the Philippines | Genome Sequences of Twenty-three SARS-CoV-2 Strains Isolated in the Philippines (AFRIMS) |
| PRJNA732277 | SRA or Trace | Genome Sequencing of SARS-CoV-2 | Genome Sequencing of SARS-CoV-2 (National Public Health Laboratory,...) |
| PRJNA633241 | SRA or Trace | Genome sequences of SARS-CoV-2 from Bangladesh | Genome sequences of SARS-CoV-2 from Bangladesh (Child Health Research Foundation) |
| PRJNA634965 | SRA or Trace | Genome sequences of SARS-CoV-2 in Hong Kong | Genome sequences of SARS-CoV-2 in Hong Kong (Hong Kong Sanatorium & Hospital) |
| PRJEB38472 | SRA or Trace | Genome sequencing of SARS-CoV-2 in Switzerland | Genome sequencing of SARS-CoV-2 in Switzerland (ETH ZURICH D-BSSE) |
| PRJNA737194 | SRA or Trace | Genomic Epidemiology of SARS-CoV-2 in Bangladesh | Genomic Epidemiology of SARS-CoV-2 in Bangladesh (International Center for...) |
| PRJNA707583 | SRA or Trace | Genomic Epidemiology of SARS-CoV-2 in Esteio, Rio Grande do Sul, Brazil | Genomic Epidemiology of SARS-CoV-2 in Esteio, Rio Grande do Sul, Brazil (Universidade Federal de Ciencias...) |
| PRJNA727469 | SRA or Trace | Genomic Sequencing of SARS-CoV-2 | Genomic Sequencing of SARS-CoV-2 (Gaziantep University) |
| PRJNA721287 | SRA or Trace | Genomic Variation of Propagated SARS-2-CoV | Genomic Variation of Propagated SARS-2-CoV (Public Health England) |
| PRJNA825706 | SRA or Trace | Genomic and epidemiological report of the BA.1-BA.2 XJ-recombinant SARS-CoV-2 variant in Northern Finland in January 2022 | Genomic and epidemiological report of the BA.1-BA.2 XJ-recombinant SARS-CoV-2 variant in Northern Finland in January 2022 (University of Helsinki) |
| PRJNA791285 | SRA or Trace | Genomic characterization of the emergent Sars-CoV-2 lineage in two districts of Campania (Italy) | Genomic characterization of the emergent Sars-CoV-2 lineage in two districts of Campania (Italy) (Biogem scarl) |
| PRJEB37722 | No data links | Genomic diversity and evolution of coronavirus | Genomic diversity and evolution of coronavirus (IHU - Mediterranee Infection) |
| PRJEB38187 | No data links | Genomic diversity and evolution of coronavirus | Genomic diversity and evolution of coronavirus (IHU - Mediterranee Infection) |
| PRJNA825765 | SRA or Trace | Genomic epidemiology of SARS-CoV-2 in Kenya | Genomic epidemiology of SARS-CoV-2 in Kenya (KEMRI-Wellcome Trust) |
| PRJNA687136 | SRA or Trace | Genomic epidemiology of SARS-CoV-2 in the United Arab Emirates reveals novel insights into the country-specific variation, co-infection and host-dependent RNA editing. | Genomic epidemiology of SARS-CoV-2 in the United Arab Emirates reveals novel insights into the country-specific variation, co-infection and host-dependent RNA editing. (G42 Healthcare) |
| PRJNA857708 | SRA or Trace | Genomic epidemiology of the SARS-CoV-2 epidemic in Brazil | Genomic epidemiology of the SARS-CoV-2 epidemic in Brazil (Instituto Butantan) |
| PRJNA645970 | SRA or Trace | Genomic epidemiology of the early stages of SARS-CoV-2 outbreak in Russia | Genomic epidemiology of the early stages of SARS-CoV-2 outbreak in Russia (Coronavirus Russian Genetic...) |
| PRJNA817604 | SRA or Trace | Genomic evidence of Sars-Cov-2 viral persistence for 386 days in asymptomatic/ mild symptomatic patient | Genomic evidence of Sars-Cov-2 viral persistence for 386 days in asymptomatic/ mild symptomatic patient (Universidad de Santiago de...) |
| PRJNA768603 | SRA or Trace | Genomic evidence of reinfection and persistence in asympto-matic patients with SARS-CoV-2 | Genomic evidence of reinfection and persistence in asympto-matic patients with SARS-CoV-2 (Universidad de Santiago de...) |
| PRJNA692481 | SRA or Trace | Genomic sequence analysis of SARS-COV-2 | Genomic sequence analysis of SARS-COV-2 (Medicine and Pharmacy School) |
| PRJNA673055 | SRA or Trace | Genomic sequences and analysis of five SARS-CoV-2 variants obtained from patients in Lambayeque, Peru | Genomic sequences and analysis of five SARS-CoV-2 variants obtained from patients in Lambayeque, Peru (Universidad Mayor) |
| PRJNA667180 | SRA or Trace | Genomic surveillance of COVID-19 cases in Beijing | Genomic surveillance of COVID-19 cases in Beijing (Beijing Ditan Hospital, Capital...) |
| PRJNA856293 | SRA or Trace | Genomic surveillance of SARS-CoV-2 in environmental air samples from Wisconsin | Genomic surveillance of SARS-CoV-2 in environmental air samples from Wisconsin (City of Milwaukee Health...) |
| PRJNA735597 | SRA or Trace | Genomic surveillance of SARS-CoV-2 viruses collected during the ending phase of the first wave of COVID-19 pandemic in Bangladesh | Genomic surveillance of SARS-CoV-2 viruses collected during the ending phase of the first wave of COVID-19 pandemic in Bangladesh (Bangabandhu Sheikh Mujib...) |
| PRJNA772935 | SRA or Trace | Gothenburg minor variant SARS-CoV-2 project | Gothenburg minor variant SARS-CoV-2 project (University of Gothenburg) |
| PRJNA681574 | SRA or Trace | Guidelines for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples | Guidelines for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples (SOPHiA GENETICS) |
| PRJNA844996 | SRA or Trace | HQE_20220602 | HQE_20220602 (HealthQuest Esoterics) |
| PRJNA850457 | SRA or Trace | HQE_20220617 | HQE_20220617 (HealthQuest Esoterics) |
| PRJNA786004 | SRA or Trace | HQE_2265138 | HQE_2265138 (HealthQuest Esoterics) |
| PRJNA781270 | SRA or Trace | HQE_2792077 | HQE_2792077 (HealthQuest Esoterics) |
| PRJNA781225 | SRA or Trace | HQE_2815960 | HQE_2815960 (HealthQuest Esoterics) |
| PRJNA781237 | SRA or Trace | HQE_2835673 | HQE_2835673 (HealthQuest Esoterics) |
| PRJNA851464 | SRA or Trace | HQE_3025573 | HQE_3025573 (HealthQuest Esoterics) |
| PRJNA786014 | SRA or Trace | HQE_RUN_SRA_20211203 | HQE_RUN_SRA_20211203 (HealthQuest Esoterics) |
| PRJNA824868 | SRA or Trace | HQE_SRA_20220408 | HQE_SRA_20220408 (HealthQuest Esoterics) |
| PRJNA751747 | SRA or Trace | HiSpike: A high-throughput cost effective full sequencing method for the SARS-CoV-2 spike gene | HiSpike: A high-throughput cost effective full sequencing method for the SARS-CoV-2 spike gene (Public Health Laboratory...) |
| PRJNA614546 | SRA or Trace | High sensitivity detection of SARS-CoV-2 using multiplex PCR and a multiplex-PCR-based metagenomic method | High sensitivity detection of SARS-CoV-2 using multiplex PCR and a multiplex-PCR-based metagenomic method (Paragon Genomics) |
| PRJEB51977 | No data links | High susceptibility of Golden Syrian hamsters to SARS-CoV-2 infection | Compellingly high susceptibility of Golden Syrian hamsters to SARS-CoV-2 infection supports recent findings of zoonotic transmission cycle between pet hamsters and humans (Friedrich-Loeffler-Institut) |
| PRJNA787091 | SRA or Trace | High-throughput deep mutational scanning of SARS-CoV-2 RBD neutralizing antibodies for epitope identification and antibody classification with yeast surface display and MACS-based selection. Raw sequence reads | High-throughput deep mutational scanning of SARS-CoV-2 RBD neutralizing antibodies for epitope identification and antibody classification with yeast surface display and MACS-based selection. Raw sequence reads (Peking University) |
| PRJNA714677 | SRA or Trace | High-throughput surveys of SARS-related coronavirus RBDs using yeast display of barcoded libraries | High-throughput surveys of SARS-related coronavirus RBDs using yeast display of barcoded libraries (Fred Hutchinson Cancer Research...) |
| PRJNA691562 | SRA or Trace | Homo sapiens | SARS-CoV-2 Antibodies Raw sequence reads (University of Illinois at...) |
| PRJNA616446 | SRA or Trace | Homo sapiens | Homo sapiens Raw sequence reads (Hubei Provincial Center for...) |
| PRJNA747809 | SRA or Trace | Homo sapiens | Homo sapiens Raw sequence reads_miRNAs (MENDELU) |
| PRJNA678831 | SRA or Trace | Host Response during COVID-19 | Host Response during COVID-19 (Institute of Genomics and...) |
| PRJNA759787 | SRA or Trace | IIMK SARS-CoV-2 nanopore reads | IIMK SARS-CoV-2 nanopore reads (Jena University Hospital) |
| PRJNA784993 | SRA or Trace | Identification of a 497nt deletion in patient with prolonged SARS-CoV-2 Infection | Identification of a 497nt deletion in patient with prolonged SARS-CoV-2 Infection (National Institutes of Health) |
| PRJNA784547 | SRA or Trace | Identification of a SARS-CoV-2 lineage B.1.1.529 virus in Belgium | Identification of a SARS-CoV-2 lineage B.1.1.529 virus in Belgium (KU Leuven, Rega Institute) |
| PRJNA842439 | SRA or Trace | In vitro passaging of attenuated SARS-CoV-2 sCPD9 | In vitro passaging of attenuated SARS-CoV-2 sCPD9 (Freie Universitat Berlin) |
| PRJNA679786 | SRA or Trace | In-frame 12 nucleotide deletion within ORF3a in SARS-CoV-2 in a patient hospitalized with COVID-19 | In-frame 12 nucleotide deletion within ORF3a in SARS-CoV-2 in a patient hospitalized with COVID-19 (University of Florida) |
| PRJNA825709 | SRA or Trace | In-vitro isolation and culture of SARS-CoV-2 virus in Kenya | In-vitro isolation and culture of SARS-CoV-2 virus in Kenya (Pan African University-Jomo...) |
| PRJNA792726 | SRA or Trace | Integrated analysis of gut microbiome and host immune responses in COVID-19 | Integrated analysis of gut microbiome and host immune responses in COVID-19 (Ruijin Hospital affiliated...) |
| PRJNA676016 | SRA or Trace | Integrative Genomics of COVID-19 Disease | Integrative Genomics of COVID-19 Disease (Institute of Genomics and...) |
| PRJNA749008 | SRA or Trace | Intra-host SARS-CoV-2 evolution in a lymphoma patient with long-term COVID-19 | Intra-host SARS-CoV-2 evolution in a lymphoma patient with long-term COVID-19 (Coronavirus Russian Genetics...) |
| PRJNA636004 | SRA or Trace | Isolation and characterization of severe acute respiratory syndrome coronavirus 2 in Turkey | Isolation and characterization of severe acute respiratory syndrome coronavirus 2 in Turkey (Istanbul Technical University) |
| PRJNA650037 | SRA or Trace | Johns Hopkins Viral Genomics of Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) | Johns Hopkins Viral Genomics of Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) (JHU SARS-CoV-2 Genome Sequencing) |
| PRJNA725674 | SRA or Trace | KRISP SARS-CoV-2 Sequencing | KRISP SARS-CoV-2 Sequencing (KwaZulu-Natal Research Innovation...) |
| PRJNA782796 | SRA or Trace | KRISP Sequencing of SARS-CoV-2 in Botswana | KRISP Sequencing of SARS-CoV-2 in Botswana (KwaZulu-Natal Research Innovation...) |
| PRJNA773611 | SRA or Trace | KRISP Sequencing of SARS-CoV-2 in Cameroon | KRISP Sequencing of SARS-CoV-2 in Cameroon (KwaZulu-Natal Research Innovation...) |
| PRJNA766503 | SRA or Trace | KRISP Sequencing of SARS-CoV-2 in Ethiopia | KRISP Sequencing of SARS-CoV-2 in Ethiopia (KwaZulu-Natal Research Innovation...) |
| PRJNA733903 | SRA or Trace | KRISP Sequencing of SARS-CoV-2 in Malawi | KRISP Sequencing of SARS-CoV-2 in Malawi (KwaZulu-Natal Research Innovation...) |
| PRJNA718451 | SRA or Trace | KRISP Sequencing of SARS-CoV-2 in Mozambique | KRISP Sequencing of SARS-CoV-2 in Mozambique (KwaZulu-Natal Research Innovation...) |
| PRJNA772074 | SRA or Trace | KRISP Sequencing of SARS-CoV-2 in Namibia | KRISP Sequencing of SARS-CoV-2 in Namibia (KwaZulu-Natal Research Innovation...) |
| PRJNA782787 | SRA or Trace | KRISP Sequencing of SARS-CoV-2 in Seychelles | KRISP Sequencing of SARS-CoV-2 in Seychelles (KwaZulu-Natal Research Innovation...) |
| PRJNA765483 | SRA or Trace | KRISP Sequencing of SARS-CoV-2 in Uganda | KRISP Sequencing of SARS-CoV-2 in Uganda (KwaZulu-Natal Research Innovation...) |
| PRJNA727735 | SRA or Trace | KRISP Sequencing of SARS-CoV-2 in Zimbabwe | KRISP Sequencing of SARS-CoV-2 in Zimbabwe (KwaZulu-Natal Research Innovation...) |
| PRJNA788338 | SRA or Trace | KRISP Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus sequencing in Mauritius | KRISP Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus sequencing in Mauritius (KwaZulu-Natal Research Innovation...) |
| PRJNA636748 | SRA or Trace | KRISP Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus sequencing in South-Africa | KRISP Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus sequencing in South-Africa (KwaZulu-Natal Research Innovation...) |
| PRJNA673341 | SRA or Trace | KRISP0194 | KRISP0194 (KwaZulu-Natal Research Innovation...) |
| PRJNA722318 | SRA or Trace | Live Virus Neutralisation of the 501Y.V1 and 501Y.V2 SARS-CoV-2 Variants following INO-4800 Vaccination of Ferrets | Live Virus Neutralisation of the 501Y.V1 and 501Y.V2 SARS-CoV-2 Variants following INO-4800 Vaccination of Ferrets (CSIRO) |
| PRJNA682013 | SRA or Trace | Longitudinal SARS-CoV-2 Patient | Longitudinal SARS-CoV-2 Patient (University College London) |
| PRJNA733662 | SRA or Trace | Metagenomic diagnosis and pathogenic network profile 1 of SARS-CoV-2 | Metagenomic diagnosis and pathogenic network profile 1 of SARS-CoV-2 (Jashore University of Science...) |
| PRJNA802370 | SRA or Trace | Metagenomic identification of human respiratory viruses | Metagenomic identification of human respiratory viruses (Broad Institute Genomic Center...) |
| PRJNA624231 | SRA or Trace | Metatranscriptomic sequencing from the COVID-19 patient in Northern Germany | Metatranscriptomic sequencing from the COVID-19 patient in Northern Germany (University Medical Center...) |
| PRJNA717974 | SRA or Trace | Molecular Evidence of SARS-CoV-2 in New York Before the First Pandemic Wave | Molecular Evidence of SARS-CoV-2 in New York Before the First Pandemic Wave (Icahn School of Medicine...) |
| PRJNA733775 | SRA or Trace | Molecular surveillance of SARS-CoV-2 in Jordan | Molecular surveillance of SARS-CoV-2 in Jordan (The Hashemite University) |
| PRJNA804321 | SRA or Trace | Mouse adapted SARS-CoV-2 and ACE2 independent infection | Mouse adapted SARS-CoV-2 and ACE2 independent infection (QIMR Berghofer Medical Research...) |
| PRJNA680710 | SRA or Trace | Multiple SARS-CoV-2 Spike Variants Arising at Seroconversion during COVID-19 | Multiple SARS-CoV-2 Spike Variants Arising at Seroconversion during COVID-19 (National Institute of Health) |
| PRJNA779209 | SRA or Trace | Mutations that adapt SARS-CoV-2 to mustelid hosts do not increase fitness in the human airway. | Mutations that adapt SARS-CoV-2 to mustelid hosts do not increase fitness in the human airway. (G2P-UK) |
| PRJNA666543 | SRA or Trace | NCSLPH SARS-CoV-2 Response Team Sequencing | NCSLPH SARS-CoV-2 Response Team Sequencing (NC SLPH COVID-19 Response...) |
| PRJNA784038 | SRA or Trace | NGS-SA SARS-CoV-2 Omicron Sequencing in South Africa | NGS-SA SARS-CoV-2 Omicron Sequencing in South Africa (KwaZulu-Natal Research Innovation...) |
| PRJNA650245 | SRA or Trace | NYU Langone SARS-CoV-2 Sequencing Team | NYU Langone SARS-CoV-2 Sequencing Team (NYU Langone Health) |
| PRJNA708265 | SRA or Trace | Nanopore sequencing of SARS-CoV-2 VOC B.1.1.7 from Canadian wastewater using tiled amplicons | Nanopore sequencing of SARS-CoV-2 VOC B.1.1.7 from Canadian wastewater using tiled amplicons (Public Health Agency of Canada) |
| PRJNA612766 | No data links | Nanopore targeted sequencing for SARS-CoV-2 and other respiratory viruses | Nanopore targeted sequencing for SARS-CoV-2 and other respiratory viruses (Wuhan University) |
| PRJNA613951 | SRA or Trace | Nasopharyngeal Swab Metatranscriptomics for identification of SARS-Cov-2 | Nasopharyngeal Swab Metatranscriptomics for identification of SARS-Cov-2 (UFBA) |
| PRJEB41549 | No data links | Natural SARS-CoV-2 infection of a therapy cat during a cluster outbreak in a retirement home | Natural SARS-CoV-2 infection of a therapy cat during a cluster outbreak in a retirement home (Friedrich-Loeffler-Institut) |
| PRJNA764863 | SRA or Trace | Near-complete genome of SARS-CoV-2 delta (AY.3) variant identified in a dog in Kansas, USA | Near-complete genome of SARS-CoV-2 delta (AY.3) variant identified in a dog in Kansas, USA (Kansas State University College...) |
| PRJNA742050 | SRA or Trace | Neutralization of SARS-CoV-2 variants by convalescent and vaccinated serum | Neutralization of SARS-CoV-2 variants by convalescent and vaccinated serum (Oregon Health & Science University) |
| PRJNA736581 | SRA or Trace | Nigerian B.1.525 SARS-CoV-2 strain | Nigerian B.1.525 SARS-CoV-2 strain (Istituto Zooprofilattico...) |
| PRJNA625669 | SRA or Trace | Novel Coronavirus genome sequence and its characterization from the patients in Gujarat during nCov-19 outbreak | Novel Coronavirus genome sequence and its characterization from the patients in Gujarat during nCov-19 outbreak (Gujarat Biotechnology Research...) |
| PRJNA773399 | SRA or Trace | Nucleocapsid mutations in SARS-CoV-2 augment replication and pathogenesis | Nucleocapsid mutations in SARS-CoV-2 augment replication and pathogenesis (University of Texas Medical...) |
| PRJNA744416 | SRA or Trace | One-year experience of SARS-CoV-2 in post-donation information | One-year experience of SARS-CoV-2 in post-donation information (APHP) |
| PRJNA857712 | SRA or Trace | Optimized Quantification of Intrahost Viral Diversity | Optimized Quantification of Intrahost Viral Diversity (National Institute of Allergy...) |
| PRJNA740065 | SRA or Trace | Oral remdesivir analog blocks SARS-CoV-2 | Oral remdesivir analog blocks SARS-CoV-2 (University of Washington) |
| PRJNA691961 | SRA or Trace | Orally delivered MK-4482 inhibits SARS-CoV-2 replication in the Syrian hamster model | Orally delivered MK-4482 inhibits SARS-CoV-2 replication in the Syrian hamster model (NIAID) |
| PRJNA737427 | SRA or Trace | Orange County Public Health Laboratory WGS | Orange County Public Health Laboratory WGS (University of California,...) |
| PRJNA724859 | SRA or Trace | Organ-specific genome diversity of replication competent SARS-CoV-2 | Organ-specific genome diversity of replication competent SARS-CoV-2 (Ghent University) |
| PRJNA765700 | SRA or Trace | PBRI SARS-CoV-2 WGS | PBRI SARS-CoV-2 WGS (PrimBio Research Institute) |
| PRJNA744872 | SRA or Trace | Pathogenic and transcriptomic differences of emerging SARS-CoV-2 variants in the Syrian golden hamster model | Pathogenic and transcriptomic differences of emerging SARS-CoV-2 variants in the Syrian golden hamster model (University of California,...) |
| PRJNA643359 | SRA or Trace | Patient-Derived SARS-CoV-2 isolates | Patient-Derived SARS-CoV-2 isolates (Zhejiang University) |
| PRJNA656695 | SRA or Trace | Philadelphia SARS-CoV-2 Genomes | Philadelphia SARS-CoV-2 Genomes (University of Pennsylvania) |
| PRJNA783155 | SRA or Trace | Philippines:Clinical Characterization of COVID-19 | Philippines:Clinical Characterization of COVID-19 (USAMD-AFRIMS) |
| PRJNA778445 | SRA or Trace | Profiling of SARS-CoV-2 genomic and subgenomic RNAs in clinical samples | Profiling of SARS-CoV-2 genomic and subgenomic RNAs in clinical samples (The Chinese University of...) |
| PRJNA836936 | SRA or Trace | Prolonged SARS-CoV-2 Infection in an Immunocompromised Individual | Prolonged SARS-CoV-2 Infection in an Immunocompromised Individual (University of Wisconsin-Madison...) |
| PRJNA668889 | SRA or Trace | Proteo-genomic analysis of SARS-CoV-2 | Proteo-genomic analysis of SARS-CoV-2 (Indian Institute of Science) |
| PRJNA753245 | SRA or Trace | REsearch on SARS-COV-2 to Understand the Epidemic in Ethiopia [RESCUE] | REsearch on SARS-COV-2 to Understand the Epidemic in Ethiopia [RESCUE] (Armauer Hansen Research Institute) |
| PRJNA824540 | SRA or Trace | Rapid isolation and resolution immune evasion and viral fitness across contemporary SARS-CoV-2 variants | Rapid isolation and resolution immune evasion and viral fitness across contemporary SARS-CoV-2 variants (University of New South Wales) |
| PRJNA608651 | SRA or Trace | Raw reads and sequence alignment of the complete genome of the first case of SARS-CoV-2 in Nepal | Raw reads and sequence alignment of the complete genome of the first case of SARS-CoV-2 in Nepal (Universidad Tecnologica de...) |
| PRJNA669553 | SRA or Trace | Replication and transmissibility of the SARS-CoV-2 spike D614G variant in multiple model systems | Replication and transmissibility of the SARS-CoV-2 spike D614G variant in multiple model systems (Institute of Virology and...) |
| PRJNA642727 | SRA or Trace | SAR-COV-2 Sequencing in Morocco | SAR-COV-2 Sequencing in Morocco (ANOUAL) |
| PRJNA734012 | SRA or Trace | SARS COV 2 IN SICILIAN POPULATION | SARS COV 2 IN SICILIAN POPULATION (Istituto Zooprofilattico...) |
| PRJNA692472 | SRA or Trace | SARS CoV-2 | SARS CoV-2 (Texas Department of State...) |
| PRJNA744530 | SRA or Trace | SARS CoV-2 Genome Sequencing in Rhode Island | SARS CoV-2 Genome Sequencing in Rhode Island (Rhode Island State Health...) |
| PRJNA689811 | SRA or Trace | SARS CoV-2 WGS | SARS CoV-2 WGS (Wadsworth Center) |
| PRJNA772359 | SRA or Trace | SARS-COV-2 VARIANT B.1.621 INFECTION IN MILD SYMPTOMS PATIENT IMMUNIZED WITH COMPLETE CORONAVAC VACCINE SCHEME: A BRIEF CLINICAL DESCRIPTION | SARS-COV-2 VARIANT B.1.621 INFECTION IN MILD SYMPTOMS PATIENT IMMUNIZED WITH COMPLETE CORONAVAC VACCINE SCHEME: A BRIEF CLINICAL DESCRIPTION (Universidad de Santiago de...) |
| PRJNA698337 | SRA or Trace | SARS-COV-2 viral transcriptome | SARS-COV-2 viral transcriptome (Department of Microbiology,...) |
| PRJNA623683 | SRA or Trace | SARS-COV2 Peruvian sequencing project | SARS-COV2 Peruvian sequencing project (Peruvian National Institute...) |
| PRJNA700531 | SRA or Trace | SARS-CoV and SARS-CoV-2 are transmitted through the air between ferrets over more than one meter distance | SARS-CoV and SARS-CoV-2 are transmitted through the air between ferrets over more than one meter distance (Erasmus Medical Center) |
| PRJNA751078 | SRA or Trace | SARS-CoV-2 | SARS-CoV-2 sequencing data collected from the New York City metropolitan area, vaccine breakthrough cases, February to April 2021 (Raw sequence reads) (NYU Langone Health) |
| PRJNA769411 | SRA or Trace | SARS-CoV-2 | SARS-CoV-2 sequencing data collected from the New York City metropolitan area, vaccine breakthrough cases, May to August 2021 (Raw sequence reads) (NYU Langone Health) |
| PRJNA704391 | SRA or Trace | SARS-CoV-2 | SARS-CoV-2 Genome sequencing (The University of Texas at...) |
| PRJNA814345 | SRA or Trace | SARS-CoV-2 -Kamphaeng Phet, Thailand | SARS-CoV-2 -Kamphaeng Phet, Thailand (USAMD-AFRIMS) |
| PRJNA712959 | SRA or Trace | SARS-CoV-2 B.1.1.7 variant in sewage | SARS-CoV-2 B.1.1.7 variant in sewage (NIBSC) |
| PRJNA816433 | SRA or Trace | SARS-CoV-2 Bamlanivimab resistance sequencing | SARS-CoV-2 Bamlanivimab resistance sequencing (Brigham and Women's Hospital) |
| PRJNA770861 | SRA or Trace | SARS-CoV-2 Co-Infection Case of Beta and Delta Variants of Concern in Malabo, Equatorial Guinea | SARS-CoV-2 Co-Infection Case of Beta and Delta Variants of Concern in Malabo, Equatorial Guinea (Swiss Tropical and Public...) |
| PRJNA742374 | SRA or Trace | SARS-CoV-2 Czech waves | SARS-CoV-2 Czech waves (TILIA LABORATORIES s.r.o.) |
| PRJNA627977 | SRA or Trace | SARS-CoV-2 Deep Sequencing Comparing Two Challenge Stocks | SARS-CoV-2 Deep Sequencing Comparing Two Challenge Stocks (UW-Madison) |
| PRJNA811594 | SRA or Trace | SARS-CoV-2 Deep Sequencing University of Wisconsin-Madison | SARS-CoV-2 Deep Sequencing University of Wisconsin-Madison (University of Wisconsin Madison) |
| PRJNA614504 | SRA or Trace | SARS-CoV-2 Deep Sequencing University of Wisconsin-Madison | SARS-CoV-2 Deep Sequencing University of Wisconsin-Madison (University of Wisconsin-Madison) |
| PRJNA666696 | SRA or Trace | SARS-CoV-2 Deep Sequencing of viral challenge stocks produced by BIOQUAL labs | SARS-CoV-2 Deep Sequencing of viral challenge stocks produced by BIOQUAL labs (UW-Madison) |
| PRJNA756686 | SRA or Trace | SARS-CoV-2 Delta Variants of Pahang, Malaysia | SARS-CoV-2 Delta Variants of Pahang, Malaysia (Universiti Malaysia Pahang) |
| PRJNA718073 | SRA or Trace | SARS-CoV-2 GENOME SEQUECING ANALYSIS IN MINAS GERAIS, BRAZIL | SARS-CoV-2 GENOME SEQUECING ANALYSIS IN MINAS GERAIS, BRAZIL (Universidade Federal de Uberlandia) |
| PRJNA670824 | SRA or Trace | SARS-CoV-2 Genome Sequencing | SARS-CoV-2 Genome Sequencing (National Institute of Mental...) |
| PRJNA726943 | SRA or Trace | SARS-CoV-2 Genome Sequencing | SARS-CoV-2 Genome Sequencing (ZHEEN INTERNATIONAL HOSPITAL) |
| PRJNA731979 | SRA or Trace | SARS-CoV-2 Genome Sequencing from Iraq | SARS-CoV-2 Genome Sequencing from Iraq (Al Muthanna University) |
| PRJNA850030 | SRA or Trace | SARS-CoV-2 Genome Sequencing from human clinical specimens | SARS-CoV-2 Genome Sequencing from human clinical specimens (Intermountain Healthcare) |
| PRJNA767338 | SRA or Trace | SARS-CoV-2 Genome Sequencing from the Greater Houston Metropolitan Area | SARS-CoV-2 Genome Sequencing from the Greater Houston Metropolitan Area (Houston Methodist Hospital) |
| PRJNA817869 | SRA or Trace | SARS-CoV-2 Genomic Surveillance, Northern Territory, Australia, 2021 | SARS-CoV-2 Genomic Surveillance, Northern Territory, Australia, 2021 (Royal Darwin Hospital) |
| PRJNA836350 | SRA or Trace | SARS-CoV-2 KamPhaeng Phet Thailand | SARS-CoV-2 KamPhaeng Phet Thailand (USAMD-AFRIMS) |
| PRJNA839158 | SRA or Trace | SARS-CoV-2 Kamphaeng Phet | SARS-CoV-2 Kamphaeng Phet (USAMD-AFRIMS) |
| PRJNA794330 | SRA or Trace | SARS-CoV-2 Omicron strain 3867 | SARS-CoV-2 Omicron strain 3867 (Hangzhou Center for Disease...) |
| PRJNA739012 | SRA or Trace | SARS-CoV-2 QLD02 and QLD935 isolate nanopore sequencing | SARS-CoV-2 QLD02 and QLD935 isolate nanopore sequencing (University of Queensland) |
| PRJNA650134 | SRA or Trace | SARS-CoV-2 Quasispecies Mediates Rapid Virus Evolution and Adaptation | SARS-CoV-2 Quasispecies Mediates Rapid Virus Evolution and Adaptation (Helmholtz Center for Infection...) |
| PRJNA764553 | SRA or Trace | SARS-CoV-2 Raw Sequencing Data from IDRL, AKU, Pakistan | SARS-CoV-2 Raw Sequencing Data from IDRL, AKU, Pakistan (Public Health Alliance for...) |
| PRJEB44803 | No data links | SARS-CoV-2 Sequences from Iceland | SARS-CoV-2 Sequences from Iceland (DECODE GENETICS) |
| PRJNA726258 | SRA or Trace | SARS-CoV-2 Sequencing | SARS-CoV-2 Sequencing (University of Washington) |
| PRJNA666685 | SRA or Trace | SARS-CoV-2 Sequencing Nigeria | SARS-CoV-2 Sequencing Nigeria (African Centre of Excellence...) |
| PRJNA751858 | SRA or Trace | SARS-CoV-2 Sequencing at Nemours Children's Hospital Delaware | SARS-CoV-2 Sequencing at Nemours Children's Hospital Delaware (Nemours Children's Hospital...) |
| PRJNA713860 | SRA or Trace | SARS-CoV-2 Sequencing at Shenandoah University | SARS-CoV-2 Sequencing at Shenandoah University (Shenandoah University) |
| PRJNA742014 | SRA or Trace | SARS-CoV-2 Variants in the Dominican Republic | SARS-CoV-2 Variants in the Dominican Republic (Universidad Iberoamericana) |
| PRJNA614995 | SRA or Trace | SARS-CoV-2 WGS | SARS-CoV-2 WGS (Utah Public Health Laboratory) |
| PRJNA687366 | SRA or Trace | SARS-CoV-2 Whole Genome Sequencing and Analysis | SARS-CoV-2 Whole Genome Sequencing and Analysis (Gazi University) |
| PRJNA645718 | SRA or Trace | SARS-CoV-2 amplicon sequencing | SARS-CoV-2 amplicon sequencing (Massey University) |
| PRJNA656720 | SRA or Trace | SARS-CoV-2 and Herpes Simplex Virus type 1 co-infection | SARS-CoV-2 and Herpes Simplex Virus type 1 co-infection (LNCC) |
| PRJNA770504 | SRA or Trace | SARS-CoV-2 delta variants from Punjab province of Pakistan | SARS-CoV-2 delta variants from Punjab province of Pakistan (The University of Lahore) |
| PRJNA623285 | SRA or Trace | SARS-CoV-2 direct RNA Nanopore sequencing | SARS-CoV-2 direct RNA Nanopore sequencing (Vanderbilt University) |
| PRJNA679328 | SRA or Trace | SARS-CoV-2 diversity and phylogeny in Indiana COVID-19 patients | SARS-CoV-2 diversity and phylogeny in Indiana COVID-19 patients (IUPUI) |
| PRJNA801401 | SRA or Trace | SARS-CoV-2 dynamics (2021) | SARS-CoV-2 dynamics (2021) (Seoul National University...) |
| PRJNA704947 | SRA or Trace | SARS-CoV-2 evolution in animals suggests mechanisms for rapid variant selection | SARS-CoV-2 evolution in animals suggests mechanisms for rapid variant selection (Colorado State University) |
| PRJNA701254 | SRA or Trace | SARS-CoV-2 genome Sequencing | SARS-CoV-2 genome Sequencing (Institut Pasteur de Dakar) |
| PRJEB41160 | No data links | SARS-CoV-2 genome sequences collected in Bern, Switzerland | SARS-CoV-2 genome sequences collected in Bern, Switzerland (swiss pathogen surveillance...) |
| PRJNA704499 | SRA or Trace | SARS-CoV-2 genome sequencing | SARS-CoV-2 genome sequencing (Hong Kong Children's Hospital) |
| PRJNA681038 | SRA or Trace | SARS-CoV-2 genome sequencing | SARS-CoV-2 genome sequencing (Yonsei University) |
| PRJNA640656 | SRA or Trace | SARS-CoV-2 genome sequencing | SARS-CoV-2 genome sequencing (LNCC) |
| PRJNA675840 | SRA or Trace | SARS-CoV-2 genome sequencing | SARS-CoV-2 genome sequencing (LNCC) |
| PRJNA774631 | SRA or Trace | SARS-CoV-2 genome sequencing Brazil | SARS-CoV-2 genome sequencing Brazil (LNCC) |
| PRJNA752057 | SRA or Trace | SARS-CoV-2 genome sequencing Brazil (Amazonas, Rio Grande do Norte, Paraiba, Bahia and Rio de Janeiro) | SARS-CoV-2 genome sequencing Brazil (Amazonas, Rio Grande do Norte, Paraiba, Bahia and Rio de Janeiro) (LNCC) |
| PRJEB49401 | SRA or Trace | SARS-CoV-2 genome sequencing Denmark | SARS-CoV-2 consensus sequences from the national surveillance in Denmark - Data collected in 2020-2023 (statens serum institut and...) |
| PRJNA694172 | SRA or Trace | SARS-CoV-2 genome sequencing Rio Grande do Sul / Brazil, Dec 2020 | SARS-CoV-2 genome sequencing Rio Grande do Sul / Brazil, Dec 2020 (LNCC) |
| PRJNA686081 | SRA or Trace | SARS-CoV-2 genome sequencing Rio de Janeiro / Brazil | SARS-CoV-2 genome sequencing Rio de Janeiro / Brazil (LNCC) |
| PRJNA634356 | SRA or Trace | SARS-CoV-2 genome sequencing and assembly Emory Healthcare 2020 | SARS-CoV-2 genome sequencing and assembly Emory Healthcare 2020 (Emory University School of...) |
| PRJEB42830 | No data links | SARS-CoV-2 genomes from upper and lower respiratory tract | Pairs of SARS-CoV-2 genomes from upper and lower respiratory tract of different individuals (Friedrich-Loeffler-Institut) |
| PRJNA679456 | SRA or Trace | SARS-CoV-2 in Ecuador | SARS-CoV-2 in Ecuador (Zurita & Zurita Laboratorios) |
| PRJNA662905 | SRA or Trace | SARS-CoV-2 in Patients with Severe Acute Respiratory Illness in Egypt | SARS-CoV-2 in Patients with Severe Acute Respiratory Illness in Egypt (Faculty of Medicine, Ain...) |
| PRJEB37671 | No data links | SARS-CoV-2 in fruit bats, ferrets, pigs, and chickens | SARS-CoV-2 in fruit bats, ferrets, pigs, and chickens: an experimental transmission study (Friedrich-Loeffler-Institut) |
| PRJNA780421 | SRA or Trace | SARS-CoV-2 in immunocompromised patients | SARS-CoV-2 in immunocompromised patients (Washington University) |
| PRJNA666219 | SRA or Trace | SARS-CoV-2 in sewage UK | SARS-CoV-2 in sewage UK (NIBSC) |
| PRJNA766526 | SRA or Trace | SARS-CoV-2 infection in one cat and three dogs living in COVID-19-positive households in Madrid, Spain | SARS-CoV-2 infection in one cat and three dogs living in COVID-19-positive households in Madrid, Spain (Universidad Complutense de...) |
| PRJNA778793 | SRA or Trace | SARS-CoV-2 infection in white-tailed deer | SARS-CoV-2 infection in white-tailed deer (Cornell University) |
| PRJNA698378 | SRA or Trace | SARS-CoV-2 isolate sequencing | SARS-CoV-2 isolate sequencing (Washington University in...) |
| PRJNA607948 | SRA or Trace | SARS-CoV-2 parallel sequencing by Illumina and Oxford Nanopore Technologies | SARS-CoV-2 parallel sequencing by Illumina and Oxford Nanopore Technologies (University of Wisconsin -...) |
| PRJNA624792 | SRA or Trace | SARS-CoV-2 propagates in human lung epithelial cell line but not in immune cell populations | SARS-CoV-2 propagates in human lung epithelial cell line but not in immune cell populations (Arinjay Banerjee, Jalees...) |
| PRJNA697927 | SRA or Trace | SARS-CoV-2 re-infection | SARS-CoV-2 re-infection (University Hospitals of Geneva) |
| PRJNA698478 | SRA or Trace | SARS-CoV-2 reinfection in a cohort of 43,000 antibody-positive individuals followed for up to 35 weeks | SARS-CoV-2 reinfection in a cohort of 43,000 antibody-positive individuals followed for up to 35 weeks (Weill Cornell Medicine in...) |
| PRJNA721724 | SRA or Trace | SARS-CoV-2 sequences from COVID19 patients in New York | SARS-CoV-2 sequences from COVID19 patients in New York (National Institutes of Health) |
| PRJNA688208 | SRA or Trace | SARS-CoV-2 sequencing | SARS-CoV-2 sequencing (University of Genoa) |
| PRJEB39632 | SRA or Trace | SARS-CoV-2 sequencing | SARS-CoV-2 genomes from late April in Stockholm, Sweden (KAROLINSKA INSITUTET) |
| PRJNA801787 | SRA or Trace | SARS-CoV-2 sequencing | SARS-CoV-2 sequencing (Faculty of Medicine and Pharmacy...) |
| PRJNA611496 | SRA or Trace | SARS-CoV-2 sequencing | SARS-CoV-2 sequencing (BGI) |
| PRJNA717314 | SRA or Trace | SARS-CoV-2 sequencing | SARS-CoV-2 sequencing (New England Biolabs) |
| PRJNA657032 | SRA or Trace | SARS-CoV-2 sequencing in cancer patients from Brazil | SARS-CoV-2 sequencing in cancer patients from Brazil (Instituto Nacional de Cancer) |
| PRJEB41697 | No data links | SARS-CoV-2 sequencing in italy | Submission of SARS-CoV-2 genomes isolated in Italy/Apulia (UNIVERSITY OF MILAN. DEPT....) |
| PRJNA762713 | SRA or Trace | SARS-CoV-2 sequencing of COVID-19 cases in Romania | SARS-CoV-2 sequencing of COVID-19 cases in Romania (Pro-Vitam Ltd) |
| PRJNA731330 | SRA or Trace | SARS-CoV-2 sequencing using ARTIC Illumina and minION protocols | SARS-CoV-2 sequencing using ARTIC Illumina and minION protocols (AMED) |
| PRJNA804575 | SRA or Trace | SARS-CoV-2 specimens with evidence of co-infection | SARS-CoV-2 specimens with evidence of co-infection (Helix) |
| PRJNA793849 | SRA or Trace | SARS-CoV-2 surveillance at NIH | SARS-CoV-2 surveillance at NIH (National Institute of Allergy...) |
| PRJNA746117 | SRA or Trace | SARS-CoV-2 unassembled sequences | SARS-CoV-2 unassembled sequences (Beijing Institute of Microbiology...) |
| PRJNA793894 | SRA or Trace | SARS-CoV-2 variants of concern have acquired mutations associated with an increased spike cleavage | SARS-CoV-2 variants of concern have acquired mutations associated with an increased spike cleavage (Icahn School of Medicine...) |
| PRJNA690551 | SRA or Trace | SARS-CoV-2 variation in COVID-19 long-haulers | SARS-CoV-2 variation in COVID-19 long-haulers (Creighton University School...) |
| PRJEB47423 | SRA or Trace | SARS-CoV-2 whole genome sequencing in Romania by the Pro-Vitam Research and Diagnostics Laboratory | Whole genome sequences of SARS-CoV-2 from oronasopharyngeal swabs obtained from Covid-19 patients run at Pro-Vitam Diagnostics and Research Laboratory, Sfantu Gheorghe, Romania. (Pro-Vitam Research and Diagnostics...) |
| PRJNA658242 | SRA or Trace | SARS-CoV-2/human/Giessen/IMVGi-1CCA/2020 | SARS-CoV-2/human/Giessen/IMVGi-1CCA/2020 (Justus-Liebig-University...) |
| PRJNA721582 | SRA or Trace | SARS-CoV-2/human/Marburg/PUM-D2417/2021 | SARS-CoV-2/human/Marburg/PUM-D2417/2021 (Justus Liebig University...) |
| PRJEB43828 | SRA or Trace | SARS-CoV-2_surveillance | SARS-CoV-2_surveillance (swiss pathogen surveillance...) |
| PRJNA674796 | SRA or Trace | SARS-CoV2 sequencing of re-infection samples | SARS-CoV2 sequencing of re-infection samples (CSIR-Institute of Genomics...) |
| PRJNA755148 | SRA or Trace | SARS-Cov-2 HTS | SARS-Cov-2 HTS (University Hospitals of Geneva) |
| PRJNA645052 | SRA or Trace | SARS-Cov-2 Sequencing NEB + Twist 1 | SARS-Cov-2 Sequencing NEB + Twist 1 (Institute of Applied Biotechnologies) |
| PRJNA645051 | SRA or Trace | SARS-Cov-2 Sequencing NEB + Twist 2 | SARS-Cov-2 Sequencing NEB + Twist 2 (Institute of Applied Biotechnologies) |
| PRJNA645048 | SRA or Trace | SARS-Cov-2 Sequencing Paragon | SARS-Cov-2 Sequencing Paragon (Institute of Applied Biotechnologies) |
| PRJNA662684 | SRA or Trace | SARS-Cov-2 from Brazilian Amazon | SARS-Cov-2 from Brazilian Amazon (Instituto evandro Chagas) |
| PRJNA635017 | SRA or Trace | SARS-Cov-2 virus strain ISR_IT0320 genome sequencing | SARS-Cov-2 virus strain ISR_IT0320 genome sequencing (Israel Institute for Biological...) |
| PRJNA626526 | SRA or Trace | SARS-Cov-2 virus strain ISR_JP0320 genome sequencing | SARS-Cov-2 virus strain ISR_JP0320 genome sequencing (Israel Institute for Biological...) |
| PRJNA628043 | SRA or Trace | SARS-coronavirus-2 replication in Vero E6 cells: replication kinetics, rapid adaptation and cytopathology | SARS-coronavirus-2 replication in Vero E6 cells: replication kinetics, rapid adaptation and cytopathology (Leiden University Medical...) |
| PRJNA623001 | SRA or Trace | SARSCoV2_RNAseq | SARSCoV2_RNAseq (Vanderbilt University) |
| PRJNA830870 | SRA or Trace | SHAPE-MaP of SARS-Cov-2 IVT 5' end transcripts | SHAPE-MaP of SARS-Cov-2 IVT 5' end transcripts (UNC Chapel Hill) |
| PRJNA788132 | SRA or Trace | Sars CoV2 Surveillance Western New Hampshire, Upper Valley | Sars CoV2 Surveillance Western New Hampshire, Upper Valley (Dartmouth College) |
| PRJNA707370 | SRA or Trace | Sars-CoV-2 Sequencing in Qatar | Sars-CoV-2 Sequencing in Qatar (Weill Cornell Medicine in...) |
| PRJNA691537 | SRA or Trace | Sars-CoV-2 genome sequencing | Sars-CoV-2 genome sequencing (University of Bari "Aldo...) |
| PRJNA655201 | SRA or Trace | Sars-Cov-2 DCV Quasispecies | Sars-Cov-2 DCV Quasispecies (Fundacao Oswaldo Cruz) |
| PRJNA627662 | SRA or Trace | Sequences of SARS-CoV-2 | Sequences of SARS-CoV-2 (Ruijin Hospital Affiliated...) |
| PRJNA781677 | SRA or Trace | Sequencing SARS-CoV-2 from Antigen Cards | Sequencing SARS-CoV-2 from Antigen Cards (59MDW-JBSA) |
| PRJNA819372 | SRA or Trace | Sequencing of SARS-CoV-2 Infected Fixed Autopsy Tissue Blocks from US | Sequencing of SARS-CoV-2 Infected Fixed Autopsy Tissue Blocks from US (NIAID) |
| PRJNA798503 | SRA or Trace | Sequencing of SARS-CoV-2 WA1 working stocks in vero and calu3 cells | Sequencing of SARS-CoV-2 WA1 working stocks in vero and calu3 cells (UC Berkeley) |
| PRJNA754449 | SRA or Trace | Sequencing of SARS-CoV-2 from Montana | Sequencing of SARS-CoV-2 from Montana (University of Montana) |
| PRJNA636225 | SRA or Trace | Sequencing of SARS-CoV-2 from the Greater Geelong area, Victoria, Australia | Sequencing of SARS-CoV-2 from the Greater Geelong area, Victoria, Australia (Geelong Centre for Emerging...) |
| PRJNA642869 | SRA or Trace | Sequencing of SARS-CoV-2 genomes from Morocco | Sequencing of SARS-CoV-2 genomes from Morocco (MedBiotech laboratory, faculty...) |
| PRJNA807703 | SRA or Trace | Sequencing of SARS-CoV-2 samples | Sequencing of SARS-CoV-2 samples (University of Sao Paulo) |
| PRJNA637285 | SRA or Trace | Sequencing of SARS-Cov-2 from oropharyngeal swab and sputum | Sequencing of SARS-Cov-2 from oropharyngeal swab and sputum (Chengdu Medical College) |
| PRJNA629891 | SRA or Trace | Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Egypt | Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Egypt (Center of Scientific Excellence...) |
| PRJNA683873 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Walter Reed Army Institute...) |
| PRJNA701669 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS (Ohio Department of Health) (Ohio Department of Health...) |
| PRJNA629552 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly (George Mason University) |
| PRJNA675117 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | HMH-CDI and NYGC - CGRN SARS-CoV-2 genome sequencing and assembly (COVID-19 Genomics Research...) |
| PRJNA713499 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Academy of Military medical...) |
| PRJNA641770 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 strain:BetaCoV/Munich/BavPat1/2020 | isolate:BetaCoV/Munich/BavPat1/2020 Raw sequence reads (ErasmusMC) |
| PRJNA708324 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: New Jersey Public Health & Environmental Laboratories (NJDOH PHEL-Virology's shared...) |
| PRJNA741723 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Bangladesh Council of Scientific...) |
| PRJDB12389 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Whole genome sequences of SARS-CoV-2 from COVID-19-positive patients in Japan (Laboratory of Bacterial Genomics,...) |
| PRJNA763939 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Rocky Mountain COVID Consortium) |
| PRJNA771693 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Wastewater Surveillance for COVID-19 (AquaVitas/NWSS) (TGen North) |
| PRJNA776735 | No data links | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: Michigan DHHS BOL (Michigan Department of Health...) |
| PRJNA777596 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (CT_SPHL) |
| PRJNA679460 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Mass molecular testing for COVID19 using NGS-based technology and a highly scalable workflow (Hospital Israelita Albert...) |
| PRJNA681020 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Louisiana State University...) |
| PRJNA692078 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Evolution of remdesivir resistance in SARS-CoV-2 (MRC-University of Glasgow...) |
| PRJNA633967 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 strain:BARJ/CVASU/001 Genome sequencing and assembly (Bangladesh Jute Research...) |
| PRJNA694514 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Whole genome sequencing of severe acute respiratory syndrome coronavirus 2, isolate Hisar/2020/5844 (ICAR-National Research Centre...) |
| PRJNA745535 | No data links | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Genome sequencing: UCSC Molecular Diagnostics (University of California...) |
| PRJNA766295 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 virus sequencing in Bangladesh (icddr,b) |
| PRJNA717017 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | DC DFS SARS-CoV-2 Raw Sequencing Reads (DC DFS PHL NCBI Submission...) |
| PRJNA636301 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 strain:NR-52282 | isolate:Hong Kong/VM20001061/2020 Genome sequencing (ATCC/BEI Resources) |
| PRJNA694511 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Whole genome sequencing of severe acute respiratory syndrome coronavirus 2, isolate Hisar/2020/4549 (ICAR-National Research Centre...) |
| PRJNA743046 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (The Translational Genomics...) |
| PRJNA732685 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (TN DOH) |
| PRJNA741211 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Wastewater sequencing for SARS-CoV-2 (Yale School of Public Health) |
| PRJNA738870 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Genome sequencing and assembly - mako (CDC-OAMD) |
| PRJNA689853 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | National SARS-CoV-2 Strain Surveillance Raw Reads (CDC Pathogen Discovery Team) |
| PRJNA689827 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 genomic data and descriptive metadata from primary specimens collected in Newfoundland and Labrador, Canada during the COVID-19 outbreak. (CanCOGeN) |
| PRJNA658567 | No data links | Severe acute respiratory syndrome coronavirus 2 | Natural history of SARS-CoV-2 in comparison to influenza A virus in a multi-site study in the Southern Hemisphere and equatorial regions. (NIAID Centers of Excellence...) |
| PRJEB37039 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 (IHU - Mediterranee Infection) |
| PRJNA746690 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Los Angeles County Public...) |
| PRJNA691291 | No data links | Severe acute respiratory syndrome coronavirus 2 | SARS-Co-V-2 WGS: North Dakota Public Health Laboratory (ND Dept of Health) |
| PRJNA694513 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Whole genome sequencing of severe acute respiratory syndrome coronavirus 2, isolate Hisar/2020/4907 (ICAR-National Research Centre...) |
| PRJNA749781 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: Washington Public Health Laboratory (WA PHL SARS-CoV-2 Genbank...) |
| PRJNA813162 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (AB PRISMA) |
| PRJNA816302 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Whole genome of SARS-CoV-2 (Universitiy Malaysia Pahang) |
| PRJNA827255 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly (Bangabandhu Sheikh Mujib...) |
| PRJNA823058 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Generation of SARS-CoV-2 mutants (Fiocruz) |
| PRJNA818911 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 isolate:Monoisolate Raw sequence reads (INSACOG) |
| PRJNA818285 | No data links | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 infections and COVID-19 vaccine effectiveness in the households (NIAID Centers of Excellence...) |
| PRJNA818286 | No data links | Severe acute respiratory syndrome coronavirus 2 | Antigenic evolution of SARS-CoV-2 in Philadelphia and Beyond (NIAID Centers of Excellence...) |
| PRJNA601630 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (The University of Hong Kong-Shenzhen...) |
| PRJNA655577 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDseq next generation sequencing (CSIR-Institute of Genomics...) |
| PRJDB11237 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Favipiravir therapy on SARS-CoV-2 (Microbiology, Fujita Health...) |
| PRJNA731149 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Genome sequencing and assembly - Infinity (CDC-OAMD) |
| PRJNA738869 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Genome sequencing and assembly - uwash (CDC-OAMD) |
| PRJNA731148 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Genome sequencing and assembly - AEGIS Genome sequencing and assembly (CDC-OAMD) |
| PRJNA744242 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Heterologous Re-challenge Genome sequencing and assembly (University of Wisconsin-Madison) |
| PRJNA789241 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Idaho Bureau of Laboratories) |
| PRJNA744045 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (University of Udine) |
| PRJNA610248 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (CDC Pathogen Discovery Team) |
| PRJNA614976 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Yale School of Public Health) |
| PRJNA622817 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (CDC Pathogen Discovery Team) |
| PRJNA625551 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2_sequencing (Virginia Division of Consolidated...) |
| PRJNA628662 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS (Minnesota Department of Health) |
| PRJNA631061 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (SPHERES) |
| PRJNA639591 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: Innovative Genomics Institute, UC Berkeley (University of California,...) |
| PRJNA647448 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Wyoming Public Health Laboratory) |
| PRJNA667798 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Establishment of 2019 Novel Coronavirus (SARS-CoV-2) Strain Genome Database in Malaysia (Universiti Malaysia Pahang) |
| PRJNA667090 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Peru / UPCH: SARS-CoV-2 WGS raw sequence reads (Universidad Peruana Cayetano...) |
| PRJNA764181 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Disease Prevention and Control) |
| PRJNA655973 | No data links | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Patient Sequencing From Sierra Leone (Viral Hemorrhagic Fever Consortium) |
| PRJNA648937 | No data links | Severe acute respiratory syndrome coronavirus 2 | SC_SARS-CoV-2 (SC DHEC) |
| PRJNA686883 | No data links | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Whole Genome sequencing (Massachusetts State Public...) |
| PRJNA737658 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: Pennsylvania Department of Health Bureau of Laboratories (PA Department of Health Bureau...) |
| PRJNA770695 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (Broad Institute) |
| PRJNA772005 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly (University of Georgia) |
| PRJNA794206 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Immunogenicity of convalescent and vaccinated sera against clinical isolates of ancestral SARS-CoV-2, beta, delta, and omicron variants (Sunnybrook/Shared Hospital...) |
| PRJNA777937 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: FYR Diagnostics (FYR Diagnostics) |
| PRJNA776532 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly (The Pennsylvania State University) |
| PRJNA778748 | No data links | Severe acute respiratory syndrome coronavirus 2 | SAVE - Isolation of SARS-CoV-2 Viruses (NIAID Centers of Excellence...) |
| PRJNA779279 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Genomic epidemiology of SARS-CoV-2 in a UK university to identify dynamics of transmission (COG-UK (Cambridge)) |
| PRJNA783642 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Odense University Hospital) |
| PRJNA661544 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 strain:Washington Raw sequence reads following adaptation in mice (University of North Carolina...) |
| PRJNA694014 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Virus sequencing of the 501Y.V2 variant of SARS-CoV-2 by the Network for Genomics Surveillance in South-Africa (NGS-SA) (Network for Genomic Surveillance...) |
| PRJNA638384 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly: Michigan Department of Health and Human Services (Michigan Department of Health...) |
| PRJNA689621 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 genomic data and descriptive metadata from primary specimens collected in Ontario, Canada and sequenced and/or assembled by the McArthur Laboratory at McMaster University (Hamilton, Ontario, Canada) during the COVID-19 outbreak. (CanCOGeN) |
| PRJNA655789 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | US Air Force School of Aerospace Medicine SARS-CoV-2 genome sequencing (United States Air Force School...) |
| PRJNA694097 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (University of Illinois at...) |
| PRJNA612840 | No data links | Severe acute respiratory syndrome coronavirus 2 | SARS-Cov-2/Valencia/Spain (FISABIO-Public Health) |
| PRJNA762998 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Bangladesh Council of Scientific...) |
| PRJNA735206 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 isolate:Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/BGD/BCSIR-DNAS-015/2021, complete genome Raw sequence reads (Genomic Research Lab, BCSIR) |
| PRJNA751551 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 genomic surveillance at CUIMC-NYPH (Columbia University) |
| PRJNA694518 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Whole genome sequencing of severe acute respiratory syndrome coronavirus 2, isolate Hisar/2020/8156 (ICAR-National Research Centre...) |
| PRJNA748730 | No data links | Severe acute respiratory syndrome coronavirus 2 | Detection and Characterization of the SARS-CoV-2 lineage B.1.526 in New York (NYC DOHMH) |
| PRJNA669536 | No data links | Severe acute respiratory syndrome coronavirus 2 | CanCOGeN SARS-CoV-2 Genome sequencing of test positive clinical samples from Saskatchewan, Canada (CanCOGeN) |
| PRJNA763216 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-COV-2 RMS (Jordan Royal Medical Services...) |
| PRJNA766678 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | New York Genome Center (NYGC) SARS-CoV-2 Genome sequencing and assembly (COVID-19 Genomics Research...) |
| PRJNA762670 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Bangladesh Council of Scientific...) |
| PRJNA658548 | No data links | Severe acute respiratory syndrome coronavirus 2 | Natural history of SARS-CoV-2 in comparison to influenza A virus in a multi-site study in the Southern Hemisphere and equatorial regions. (NIAID Centers of Excellence...) |
| PRJNA748084 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: CA-OCPHL (Orange County Public Health...) |
| PRJNA759255 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Massachusetts General Hospital) |
| PRJNA694506 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Whole genome sequencing of severe acute respiratory syndrome coronavirus 2, isolate Hisar/2020/2710 (ICAR-National Research Centre...) |
| PRJNA694494 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Whole genome sequencing of severe acute respiratory syndrome coronavirus 2, isolate Fatehbad/2020/2690 (ICAR-National Research Centre...) |
| PRJNA815364 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: Louisiana Public Health Laboratory (Louisiana OPH WGS Laboratory) |
| PRJNA825560 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (US Army DEVCOM Chemical Biological...) |
| PRJNA817360 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 via wastewater Raw sequence reads (University of Nevada Las...) |
| PRJNA816894 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 whole genome sequencing from large-scale campus testing and state-wide communities in NH (Hubbard Center for Genome...) |
| PRJNA819090 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (San Diego Epidemiology and...) |
| PRJNA818502 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Bangladesh Council of Scientific...) |
| PRJNA601736 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Metatranscriptomics of two pneumonia cases (Wuhan University) |
| PRJNA656534 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (New Mexico Department of...) |
| PRJNA731152 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Genome sequencing and assembly - FULGENT (CDC-OAMD) |
| PRJNA740111 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (UCLA) |
| PRJNA799034 | No data links | Severe acute respiratory syndrome coronavirus 2 | Testing vaccine efficacy against variants in rhesus macaques (NIAID Centers of Excellence...) |
| PRJNA799245 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS from MO Wastewater Raw sequence reads (University of Missouri) |
| PRJNA713936 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Academy of Military medical...) |
| PRJNA786923 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS (Wisconsin State Laboratory...) |
| PRJNA803169 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 strain:B.1.1.7 Genome sequencing (University Hospital Dresden) |
| PRJNA803552 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Efficacy of molnupiravir in dwarf hamster model of severe COVID-19 (University of Washington) |
| PRJNA613958 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) genome sequencing (The Peter Doherty Institute...) |
| PRJNA622837 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Patient Sequencing from the Broad Institute (Broad Institute of MIT and...) |
| PRJNA629889 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Genome sequencing of Severe acute respiratory syndrome coronavirus 2 in California (University of California...) |
| PRJNA643530 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Genome sequencing from UAMS patients (UAMS) |
| PRJNA645906 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (CZB Cliahub Consortium) |
| PRJNA669459 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (University of Siena) |
| PRJNA665485 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | UNAB/INDISA SARS-CoV-2 sequencing (Universidad Andres bello) |
| PRJNA720050 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Sars-cov-2 samples from helix (CDC-OAMD) |
| PRJNA701872 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 genomic data and descriptive metadata collected during the COVID-19 outbreak in Dhaka, Bangladesh (Wazed Miah Science Research...) |
| PRJNA733209 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly (Genomic Research Lab) |
| PRJNA756163 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly (This work is carried out...) |
| PRJNA694524 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Whole genome sequencing of severe acute respiratory syndrome coronavirus 2, isolate Hisar/2020/9088 (ICAR-National Research Centre...) |
| PRJNA658563 | No data links | Severe acute respiratory syndrome coronavirus 2 | Natural history of SARS-CoV-2 in comparison to influenza A virus in a multi-site study in the Southern Hemisphere and equatorial regions. (NIAID Centers of Excellence...) |
| PRJNA629390 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly (Johns Hopkins University...) |
| PRJNA658561 | No data links | Severe acute respiratory syndrome coronavirus 2 | Natural history of SARS-CoV-2 in comparison to influenza A virus in a multi-site study in the Southern Hemisphere and equatorial regions. (NIAID Centers of Excellence...) |
| PRJNA637508 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (Wuhan University) |
| PRJNA748401 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 ARTIC sequencing and assembly (Washington University in...) |
| PRJNA682397 | No data links | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 genomic data and descriptive metadata from primary specimens collected in Alberta, Canada during the COVID-19 outbreak. (CanCOGeN) |
| PRJNA796972 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (CDC Strain Surveillance and...) |
| PRJNA682395 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 genomic data and descriptive metadata from primary specimens collected in Ontario, Canada during the COVID-19 outbreak. (CanCOGeN) |
| PRJNA679980 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Raw sequence reads of SARS-CoV-2 from a case of donor derived infection by lung transplantation (University of Michigan -...) |
| PRJNA675364 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (The Garvan Institute) |
| PRJNA675109 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 genomic data and descriptive metadata from primary specimens collected in New Brunswick, Canada during the COVID-19 outbreak. (CanCOGeN) |
| PRJNA682212 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Raw sequence reads of SARS-CoV-2 from hospitalized patients (University of Michigan -...) |
| PRJNA722044 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly (University of California,...) |
| PRJNA651152 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 strain:SARS-CoV-2 Raw sequence reads (The Garvan Institute) |
| PRJNA749279 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: CA-SLOPHL (County of San Luis Obispo...) |
| PRJNA685102 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Escape from neutralizing antibodies by SARS-CoV-2 spike protein variants (The Rockefeller University) |
| PRJNA658534 | No data links | Severe acute respiratory syndrome coronavirus 2 | Natural history of SARS-CoV-2 in comparison to influenza A virus in a multi-site study in the Southern Hemisphere and equatorial regions. (NIAID Centers of Excellence...) |
| PRJNA720702 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: UNC Charlotte Environmental Monitoring Laboratory (Cynthia J Gibas) |
| PRJNA765540 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (University of Arkansas Medical...) |
| PRJNA763390 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Benchmark datasets for technical evaluation of SARS-CoV-2 bioinformatic analysis workflows (Centers for Disease Control...) |
| PRJNA648098 | No data links | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 genome sequencing of clinical isolates from Maine (The Jackson Laboratory) |
| PRJNA717311 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 USA-WA1/2020 Genome sequencing (ATCC) |
| PRJNA658550 | No data links | Severe acute respiratory syndrome coronavirus 2 | Natural history of SARS-CoV-2 in comparison to influenza A virus in a multi-site study in the Southern Hemisphere and equatorial regions. (NIAID Centers of Excellence...) |
| PRJNA737163 | No data links | Severe acute respiratory syndrome coronavirus 2 | Genomic Epidemiology of SARS-CoV-2 in Bangladesh (International Center for...) |
| PRJNA630714 | No data links | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Whole-Genome Sequencing (FLDOH) |
| PRJNA699623 | No data links | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 genomic data and descriptive metadata from primary specimens collected in British Columbia, Canada during the COVID-19 outbreak. (CanCOGeN) |
| PRJNA694516 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Whole genome sequencing of severe acute respiratory syndrome coronavirus 2, isolate Hisar/2020/6868 (ICAR-National Research Centre...) |
| PRJNA719402 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (HudsonAlpha Genome Sequencing...) |
| PRJNA728465 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Whole Genome Sequencing of SARS-CoV-2 isolates from Asymptomatic Individuals (Bangalore Medical College...) |
| PRJNA658528 | No data links | Severe acute respiratory syndrome coronavirus 2 | Natural history of SARS-CoV-2 in comparison to influenza A virus in a multi-site study in the Southern Hemisphere and equatorial regions. (NIAID Centers of Excellence...) |
| PRJNA686074 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 genomic data and descriptive metadata from primary specimens collected in Quebec, Canada during the COVID-19 outbreak. (CanCOGeN) |
| PRJNA639827 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 strain:Hong Kong/VM20001061/2020 Genome sequencing (BEI Resources/American Type...) |
| PRJNA760262 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (GSI Lab) |
| PRJNA723527 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly (Cleveland Clinic) |
| PRJNA748164 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly (Hallym University College...) |
| PRJNA813693 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Whole Genome Sequencing and assembly (The Foundation for Medical...) |
| PRJNA805055 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Genomic Surveillance of SARS-CoV-2 in South Africa (University of Cape Town and...) |
| PRJNA796950 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | A random priming amplification method for whole genome sequencing of SARS-CoV-2 virus (The Pirbright Institute) |
| PRJDB13643 | No data links | Severe acute respiratory syndrome coronavirus 2 | Preparation of chimeric recombinant SARS-CoV-2 (The Genotype to Phenotype...) |
| PRJDB13662 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Preparation of chimeric recombinant SARS-CoV-2 viruses (The Genotype to Phenotype...) |
| PRJNA818066 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Universitiy Malaysia Pahang) |
| PRJNA818284 | No data links | Severe acute respiratory syndrome coronavirus 2 | Human Influenza Virus Surveillance (NIAID Centers of Excellence...) |
| PRJNA603194 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Complete genome of a novel coronavirus associated with severe human respiratory disease in Wuhan, China (Shanghai Public Health Clinical...) |
| PRJNA623797 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Canadian SARS-CoV-2 cultured isolates (Canadian Public Health Laboratory...) |
| PRJNA662193 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 strain:SARS-CoV2 Raw sequence reads (CSIR-Institute of Genomics...) |
| PRJNA739246 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Whole Genome Sequencing of SARS-CoV-2 from Pahang, Malaysia (Universitiy Malaysia Pahang) |
| PRJNA800356 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 with intra-host recombination during superinfection with Alpha and Epsilon variants (NYC DOHMH) |
| PRJNA787283 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 infection in free-ranging white-tailed deer (NIAID Centers of Excellence...) |
| PRJNA605907 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | 2019 novel coronavirus (Beijing Institute of Genomics,...) |
| PRJNA632678 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 isolate:Cali-01 | cultivar:Human Genome sequencing (Universidad del Valle) |
| PRJNA634119 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (CZB Cliahub Consortium) |
| PRJNA643574 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Raw sequence reads which mapped to reference (Bioinfoexperts NCBI submission...) |
| PRJNA722947 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (University of Illinois at...) |
| PRJNA714692 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: ISB and Swedish Medical Center (Institute for Systems Biology) |
| PRJNA717113 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (KwaZulu-Natal Research Innovation...) |
| PRJNA714680 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: Los Alamos National Laboratory, Biosecurity and Public Health (Los Alamos National Laboratory...) |
| PRJNA827817 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Mixture Raw sequence reads (The Ohio State University) |
| PRJNA824869 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: San Diego County Public Health Laboratory (SDCPHL) (San Diego County Public Health...) |
| PRJNA858468 | No data links | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Genome sequencing and assembly Test BioProject (CDC) |
| PRJNA858817 | No data links | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: Wyoming Public Health Laboratory, Wyoming, USA (Wyoming Public Health Laboratory) |
| PRJNA853501 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (Mahidol University) |
| PRJNA713804 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Surveillance Sequencing (University of Maryland Baltimore) |
| PRJDB11220 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Escape mutant screening of SARS-CoV-2 using two neutralizing antibody clones. (Laboratory of Bacterial Genomics,...) |
| PRJNA675370 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 infection in mammalian cell cultures (The University of Melbourne) |
| PRJNA714744 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: Oregon State Public Health Laboratory (Oregon State Public Health...) |
| PRJNA723329 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | EPICC SARS-CoV-2 Sequencing (United States Air Force School...) |
| PRJNA702507 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 strain:Wuhan-Hu-1 Raw sequence reads (Columbia University) |
| PRJNA849381 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (Veterinary Medical Research...) |
| PRJNA686984 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Genome sequencing and assembly (Colorado Department of Public...) |
| PRJNA723604 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Capture Sequencing: Baylor College of Medicine (Baylor College of Medicine...) |
| PRJNA736211 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Genomic surveillance of SARS-CoV-2 in wastewater in Gujarat, India (Gujarat Biotechnology Research...) |
| PRJNA658321 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (MRC-University of Glasgow...) |
| PRJNA639505 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (MDH) |
| PRJNA658983 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Identification of SARS-CoV2 in cardiac tissue biopsy from a patient identified with COVID-19 in Quito, Ecuador - Raw sequence reads (Universidad San Francisco...) |
| PRJNA681234 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Nasopharyngeal swabs from a chronically infected patient with SARS-CoV-2 (Fred Hutchinson Cancer Research...) |
| PRJNA669043 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 genomic data and descriptive metadata from primary specimens collected in Manitoba, Canada during the COVID-19 outbreak (CanCOGeN) |
| PRJNA698267 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Intra-host Variation and Evolutionary Dynamics of SARS-CoV-2 Populations in COVID-19 Patients (State Key Laboratory of Respiratory...) |
| PRJNA694490 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Whole genome sequencing of severe acute respiratory syndrome coronavirus 2, isolate Sirsa/2020/1469 (ICAR-National Research Centre...) |
| PRJNA766604 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (Oklahoma Medical Research...) |
| PRJNA767891 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Das Lab - VUMC - Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly (Vanderbilt University Medical...) |
| PRJNA753237 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: Monterey County Public Health Laboratory (Monterey County Public Health...) |
| PRJNA663292 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Seoul National University...) |
| PRJNA648792 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Institute of Environmental...) |
| PRJNA706724 | No data links | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Genome sequencing and assembly (TOAST) (Technical Outreach and Assistance...) |
| PRJNA694526 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Whole genome sequencing of severe acute respiratory syndrome coronavirus 2, isolate Hisar/2020/COVID-19 (ICAR-National Research Centre...) |
| PRJNA758017 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly of RNA collected from hamster lung tissue. (University of Wisconsin-Madison) |
| PRJNA659222 | No data links | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 sequences (NIAID Centers of Excellence...) |
| PRJNA752612 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome Sequencing (Hudsonalpha Genome Sequencing...) |
| PRJNA732426 | No data links | Severe acute respiratory syndrome coronavirus 2 | UNM SARS-CoV-2 sequecning (University of New Mexico...) |
| PRJNA704697 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | NYC SARS-CoV-2 Genome sequencing and assembly (NYC SARS-CoV-2) |
| PRJNA670315 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (COVID-19 Network Investigation...) |
| PRJNA750261 | No data links | Severe acute respiratory syndrome coronavirus 2 | Whole genome sequencing of SARS-CoV-2 isolates from Assam, India (Gauhati Medical College) |
| PRJNA719837 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly (Oregon State University) |
| PRJNA750736 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (California Department of...) |
| PRJNA734500 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 genome sequencing and surveillance in Libya (Biotechnology Research Center) |
| PRJNA658554 | No data links | Severe acute respiratory syndrome coronavirus 2 | Natural history of SARS-CoV-2 in comparison to influenza A virus in a multi-site study in the Southern Hemisphere and equatorial regions. (NIAID Centers of Excellence...) |
| PRJNA623586 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Whole-genome sequencing of COVID-19 clinical isolates (NIAID Centers of Excellence...) |
| PRJNA765406 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Asociacion Benefica PRISMA,...) |
| PRJNA669513 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 genomic data and descriptive metadata from primary specimens collected in Nova Scotia, Canada during the COVID-19 outbreak. (CanCOGeN) |
| PRJNA713497 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Academy of Military medical...) |
| PRJNA746979 | No data links | Severe acute respiratory syndrome coronavirus 2 | Seattle Flu Study SARS-CoV-2 genome sequencing and assembly (Seattle Flu Study submission...) |
| PRJNA699398 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Analysis of SARS-CoV-2 known and novel subgenomic mRNAs in cell culture, animal model, and clinical samples using LeTRS, a bioinformatic tool to identify unique sequence identifiers (University of Liverpool) |
| PRJNA830508 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: IEH Laboratories and Consulting Group (Molecular Epidemiology Inc) |
| PRJNA819439 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly (CoViGen-Mex) |
| PRJNA657893 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 - raw sequence reads (Nevada State Public Health...) |
| PRJNA736036 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: State Hygienic Laboratory at the University of Iowa (State Hygienic Laboratory...) |
| PRJNA716984 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Genome sequencing and assembly - LabCorp (CDC-OAMD) |
| PRJDB11095 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | A murine model for SARS-CoV-2 study (National Institute of Infectious...) |
| PRJNA743043 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly (Universidad Peruana Cayetano...) |
| PRJNA799035 | No data links | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Variant Surveillance in Lusaka and Ndola, Zambia (NIAID Centers of Excellence...) |
| PRJNA788555 | No data links | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: University of Idaho IIDS (University of Idaho) |
| PRJNA790937 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 strain:Gamma Raw sequence reads (University of California,...) |
| PRJNA793261 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS: Contra Costa Public Health Laboratory (Contra Costa Public Health...) |
| PRJNA785948 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (University of South Dakota) |
| PRJNA605983 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (Wuhan Institute of Virology,...) |
| PRJNA612578 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (The Scripps Research Institute) |
| PRJNA616147 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (University Malaya) |
| PRJNA627229 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Center of Medical Microbiology,...) |
| PRJNA631042 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Raw sequence reads (University of Minnesota) |
| PRJNA633048 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 RNA raw sequence reads (University of North Carolina) |
| PRJNA639551 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Genomic RNA from SARS-Related Coronavirus 2 (University of North Carolina) |
| PRJNA643575 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Raw sequence reads from ARCTIC V3 tiled amplicon approach (Bioinfoexperts NCBI submission...) |
| PRJNA662589 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Raw sequence reads of SARS-CoV-2 from a prolonged infection (University of Michigan -...) |
| PRJNA667434 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly (The Bio Arte Limited) |
| PRJNA690890 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | ACoRE: Accurate SARS-CoV-2 genome reconstruction for the characterization of intra-host 1 and inter-host viral diversity in clinical samples and for the evaluation of re-infections (University Of Verona) |
| PRJNA707536 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS South Dakota Public Health Laboratory (Chris Carlson) |
| PRJNA713811 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (Institut Pasteur - Montevideo) |
| PRJNA716985 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Genome sequencing and assembly - QUEST (CDC-OAMD) |
| PRJNA728523 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | raw data of cut efficiency (Wuhan university) |
| PRJNA715749 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (SPHERES) |
| PRJNA720544 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 genome sequencing and assembly from COVID-19 autopsy tissue specimens (Broad Institute) |
| PRJNA634396 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (SARS-CoV-2 sequencing) |
| PRJNA718231 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 WGS (Noblis) |
| PRJNA749743 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing of wastewater in Oregon (Oregon Health Authority) |
| PRJNA759056 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing and assembly (ICMR-NIRTH Jabalpur, Madhya Pradesh) (ICMR National Institute of...) |
| PRJNA858454 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (University of Nebraska Medical...) |
| PRJNA851248 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Genome sequencing (Fiocruz) |
| PRJNA853191 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Genomic epidemiology of the SARS-CoV-2 epidemic in Brazil (Instituto Butantan) |
| PRJNA670222 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 strain:Covid 19 | isolate:Nasopharyngeal (NP) swab Genome sequencing (Illumina Inc) |
| PRJNA691606 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (PUCRS) |
| PRJDB11029 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 on asymptomatic carriers (Microbiology, Fujita Health...) |
| PRJNA719089 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 Raw sequence reads (Lineberger Comprehensive...) |
| PRJNA727811 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 raw sequence reads of emerging lineage C.37 in Peru (Universidad Peruana Cayetano...) |
| PRJNA716271 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Sequencing of SARS-CoV-2 Isolates from BEI Resources (ATCC) |
| PRJNA718818 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-coronavirus-2 expansion in Vero cells (National Institute of Biological...) |
| PRJNA748354 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Raw sequence reads from MO wastewater (University of Missouri) |
| PRJNA810979 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 genome sequences from La Araucania, Chile (Scientific and Technological...) |
| PRJNA846526 | No data links | Severe acute respiratory syndrome coronavirus 2 | Severe acute respiratory syndrome coronavirus 2 strain:Viruses | isolate:CPHL-010222-58 | breed:Riboviria | cultivar:CPHL-010222-58/2022 Genome sequencing (Central Public Health Laboratory) |
| PRJNA858053 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Within-host evolutionary dynamics and tissue compartmentalization during acute SARS-CoV-2 infection (University of Illinois at...) |
| PRJNA850375 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads (CDPHE SARS-CoV-2 submissions) |
| PRJNA792013 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 | Deep mutational scanning of SARS-CoV-2 Spike N-terminal domain (NTD) (University of Illinois at...) |
| PRJNA666189 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) | Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) (University of Florida) |
| PRJNA752133 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 Viral Stock Genome sequencing and assembly UW-Madison 07-2021 | Severe acute respiratory syndrome coronavirus 2 Viral Stock Genome sequencing and assembly UW-Madison 07-2021 (University of Wisconsin-Madison) |
| PRJNA691556 | SRA or Trace | Severe acute respiratory syndrome coronavirus 2 genome sequencing | Severe acute respiratory syndrome coronavirus 2 genome sequencing (Centre for DNA Fingerprinting...) |
| PRJNA729878 | SRA or Trace | Short Plus Long-Amplicon Based Sequencing Approach Improves Genomic Coverage And Variant Detection In SARS-CoV-2 Genome | Short Plus Long-Amplicon Based Sequencing Approach Improves Genomic Coverage And Variant Detection In SARS-CoV-2 Genome (University of Texas Southwestern...) |
| PRJNA729484 | SRA or Trace | Short Report: Early genomic detection of SARS-CoV-2 P.1 variant in Northeast Brazil | Short Report: Early genomic detection of SARS-CoV-2 P.1 variant in Northeast Brazil (Ministerio da Saude) |
| PRJNA767877 | SRA or Trace | State of Montana SARS-CoV-2 Genome Sequencing | State of Montana SARS-CoV-2 Genome Sequencing (Montana Public Health Lab) |
| PRJNA690577 | SRA or Trace | Structural Variants of SARS-CoV-2 Genome and Transcriptomes | Structural Variants of SARS-CoV-2 Genome and Transcriptomes (The Jackson Laboratory) |
| PRJNA679438 | SRA or Trace | Structure-guided multivalent nanobodies block SARS-CoV-2 infection and suppress mutational escape | Structure-guided multivalent nanobodies block SARS-CoV-2 infection and suppress mutational escape (University of Bonn) |
| PRJNA778931 | SRA or Trace | Study of SARS-CoV-2 epidemiological clusters in NW Spain | Study of SARS-CoV-2 epidemiological clusters in NW Spain (Universidade de Vigo) |
| PRJNA650023 | SRA or Trace | Sub Genomic analysis of SARS-CoV-2 using short read amplicon-based sequencing | Sub Genomic analysis of SARS-CoV-2 using short read amplicon-based sequencing (Agency of Science Technology...) |
| PRJNA727012 | SRA or Trace | Subtle Differences in the Pathogenicity of SARS-CoV-2 Variants of Concern B.1.1.7 and B.1.351 in Rhesus Macaques | Subtle Differences in the Pathogenicity of SARS-CoV-2 Variants of Concern B.1.1.7 and B.1.351 in Rhesus Macaques (National Institute of Allergy...) |
| PRJNA744588 | SRA or Trace | Sunnybrook/Shared Hospital Laboratory SARS-CoV-2 Genomic Surveillance | Sunnybrook/Shared Hospital Laboratory SARS-CoV-2 Genomic Surveillance (CanCOGeN/OnCOV) |
| PRJNA828186 | SRA or Trace | Surveillance of SARS-CoV-2 in Alaska | Surveillance of SARS-CoV-2 in Alaska (Alaska SARS-CoV-2 Sequencing...) |
| PRJNA786974 | SRA or Trace | Systemic infection of SARS-CoV-2 in Leopard | Systemic infection of SARS-CoV-2 in Leopard (Indian Veterinary Research...) |
| PRJNA639066 | SRA or Trace | TX SARS-CoV-2 Sequencing | TX SARS-CoV-2 Sequencing (Texas Department of State...) |
| PRJNA741220 | SRA or Trace | Target Capture Sequencing of SARS-CoV-2 Genomes Using the ONETest Coronaviruses Plus | Target Capture Sequencing of SARS-CoV-2 Genomes Using the ONETest Coronaviruses Plus (Fusion Genomics Corporation) |
| PRJNA749298 | SRA or Trace | Targeted detection of SARS-CoV-2 protein variants by mass spectrometry | Targeted detection of SARS-CoV-2 protein variants by mass spectrometry (Mayo Clinic) |
| PRJNA637497 | No data links | Targeted sequencing for different SARS-CoV-2 lineages | Targeted sequencing for different SARS-CoV-2 lineages (Wuhan University) |
| PRJNA669862 | SRA or Trace | The RNA architecture of the SARS-CoV-2 3-prime untranslated region | The RNA architecture of the SARS-CoV-2 3-prime untranslated region (University of Kansas) |
| PRJNA854199 | SRA or Trace | The SARS-CoV-2 genome, its evolution and epidemiology in Latin America | The SARS-CoV-2 genome, its evolution and epidemiology in Latin America (Universidad de Costa Rica) |
| PRJNA726871 | SRA or Trace | The first confirmed SARS-CoV-2 B.1.617.2 variant sequence from Romania | The first confirmed SARS-CoV-2 B.1.617.2 variant sequence from Romania (Pro-Vitam Diagnostics and...) |
| PRJNA827138 | SRA or Trace | The prevalence of SARS-CoV-2 in Mexico | The prevalence of SARS-CoV-2 in Mexico (CPA-SENASICA) |
| PRJNA815322 | SRA or Trace | Therapeutic efficacy of an oral nucleoside analog of remdesivir against SARS-CoV-2 pathogenesis in mice | Therapeutic efficacy of an oral nucleoside analog of remdesivir against SARS-CoV-2 pathogenesis in mice (UNC Chapel Hill) |
| PRJNA730334 | SRA or Trace | Tiled amplicon nanopore sequencing of SARS-CoV-2 | Tiled amplicon nanopore sequencing of SARS-CoV-2 (CHU Sainte-Justine Research...) |
| PRJNA707211 | SRA or Trace | Tiled-ClickSeq for targeted sequencing of Coronavirus genomes | Tiled-ClickSeq for targeted sequencing of Coronavirus genomes (University of Texas Medical...) |
| PRJNA802993 | SRA or Trace | Timing and dynamics of repeated SARS-CoV-2 spillover events at the outset of the COVID-19 pandemic | Timing and dynamics of repeated SARS-CoV-2 spillover events at the outset of the COVID-19 pandemic (National Centre for Infectious...) |
| PRJNA719102 | SRA or Trace | Transcriptome from Tracheal aspirate | Transcriptome from Tracheal aspirate (Fundacao Oswaldo Cruz) |
| PRJNA666926 | SRA or Trace | Transmission of SARS-CoV-2 in domestic cats | Transmission of SARS-CoV-2 in domestic cats (University of Wisconsin -...) |
| PRJNA699251 | SRA or Trace | Two prolonged viremic SARS-CoV-2 infections with conserved viral genome for two months | Two prolonged viremic SARS-CoV-2 infections with conserved viral genome for two months (Weill Cornell Medicine in...) |
| PRJNA735252 | SRA or Trace | UC Davis SARS-CoV-2 Sequencing Effort | UC Davis SARS-CoV-2 Sequencing Effort (UC Davis Bioinformatics Core) |
| PRJNA687376 | SRA or Trace | Viral populations of SARS-CoV-2 detected in upper respiratory tract, placenta, amniotic fluid and umbilical cord blood from a transplacental transmission case in Barcelona, Spain | Viral populations of SARS-CoV-2 detected in upper respiratory tract, placenta, amniotic fluid and umbilical cord blood from a transplacental transmission case in Barcelona, Spain (Vall d'Hebron Institut de...) |
| PRJNA738541 | SRA or Trace | Visualization of SARS-CoV-2 infection dynamic | Visualization of SARS-CoV-2 infection dynamic (University of Washington) |
| PRJNA820054 | SRA or Trace | WGS data of SARS-CoV-2 | WGS data of SARS-CoV-2 (National Center for Genome...) |
| PRJNA688057 | SRA or Trace | WGS of SARCOV2 in Myanmar | WGS of SARCOV2 in Myanmar (Department of Medical Research) |
| PRJNA667200 | SRA or Trace | WGS of SARCOV2 in Myanmar | WGS of SARCOV2 in Myanmar (Department of Medical Research) |
| PRJNA659630 | SRA or Trace | WGS of SARCOV2 in Myanmar | WGS of SARCOV2 in Myanmar (Department of Medical Research) |
| PRJNA688207 | SRA or Trace | WGS of SARCOV2 in Myanmar (2020) | WGS of SARCOV2 in Myanmar (2020) (Department of Medical Research) |
| PRJNA624358 | SRA or Trace | WGS of SARS-CoV-2 genomes from South Africa | WGS of SARS-CoV-2 genomes from South Africa (National Institute for Communicable...) |
| PRJNA663402 | SRA or Trace | WGS_SARS-CoV-2 | WGS_SARS-CoV-2 (Seoul National University...) |
| PRJNA610428 | SRA or Trace | Washington SARS-CoV-2 isolate sequences | Washington SARS-CoV-2 isolate sequences (UNIVERSITY OF WASHINGTON) |
| PRJNA720687 | SRA or Trace | Wastewater study of severe acute respiratory syndrome coronavirus 2 in Newport Oregon | Wastewater study of severe acute respiratory syndrome coronavirus 2 in Newport Oregon (Oregon State University) |
| PRJEB49094 | No data links | What drives fatal cases of COVID-19 in vaccinees? | What drives fatal cases of COVID-19 in vaccinees? (Friedrich-Loeffler-Institut) |
| PRJNA780398 | SRA or Trace | Whole Genome Sequence of SARS-CoV-2 Isolates from Ethiopia | Whole Genome Sequence of SARS-CoV-2 Isolates from Ethiopia (International Centre for...) |
| PRJNA691021 | SRA or Trace | Whole Genome Sequence of a SARS-CoV-2 Isolate from Dominican Republic | Whole Genome Sequence of a SARS-CoV-2 Isolate from Dominican Republic (ARGO Open Lab Platform for...) |
| PRJNA786454 | SRA or Trace | Whole Genome Sequences of SARS-CoV-2 Isolates from the Republic of Moldova | Whole Genome Sequences of SARS-CoV-2 Isolates from the Republic of Moldova (International Centre for...) |
| PRJNA707397 | SRA or Trace | Whole Genome Sequencing of SARS-CoV-2 | Whole Genome Sequencing of SARS-CoV-2 (The Foundation for Medical...) |
| PRJNA655183 | SRA or Trace | Whole Genome Sequencing of SARS-CoV-2 in Myanmar | Whole Genome Sequencing of SARS-CoV-2 in Myanmar (Department of Medical Research) |
| PRJNA757011 | SRA or Trace | Whole Genome Sequencing of SARS-CoV-2: Assessment of the Ion Torrent AmpliSeq Panel and Comparison with the Illumina-MiSeq ARTIC Protocol | Whole Genome Sequencing of SARS-CoV-2: Assessment of the Ion Torrent AmpliSeq Panel and Comparison with the Illumina-MiSeq ARTIC Protocol (Wadsworth Center) |
| PRJNA608242 | SRA or Trace | Whole genome sequencing of Coronavirus samples from different patients | Whole genome sequencing of Coronavirus samples from different patients (University of Hong Kong) |
| PRJNA633948 | SRA or Trace | Whole genome sequencing of SARS-CoV-2 clinical isolates | Whole genome sequencing of SARS-CoV-2 clinical isolates (Institute of Clinical Pathology...) |
| PRJNA692653 | SRA or Trace | Whole genome sequencing of SARS-CoV-2 from clinical samples for diagnostic kit development | Whole genome sequencing of SARS-CoV-2 from clinical samples for diagnostic kit development (Gonoshasthaya-RNA Molecular...) |
| PRJNA815715 | SRA or Trace | Whole genome sequencing of SARS-CoV-2 isolated from Noakhali, a Southeastern district in Bangladesh | Whole genome sequencing of SARS-CoV-2 isolated from Noakhali, a Southeastern district in Bangladesh (North South University) |
| PRJNA643654 | SRA or Trace | Whole genome sequencing of SARS-CoV-2 isolated from suspected cases among Bangladeshi patients. | Whole genome sequencing of SARS-CoV-2 isolated from suspected cases among Bangladeshi patients. (DNA SOLUTION LTD.) |
| PRJNA723901 | SRA or Trace | Whole genome sequencing of SARS-CoV-2 isolates from culture | Whole genome sequencing of SARS-CoV-2 isolates from culture (Institute of Clinical Pathology...) |
| PRJNA636446 | SRA or Trace | Whole genome sequencing of SARS-CoV-2 using amplicon-based sequencing, random hexamers, and bait capture | Whole genome sequencing of SARS-CoV-2 using amplicon-based sequencing, random hexamers, and bait capture (Jalees A. Nasir, Amogelang...) |
| PRJNA689000 | SRA or Trace | Whole genome sequencing of SARS-Cov-2 virus strain NITMA1139 | Whole genome sequencing of SARS-Cov-2 virus strain NITMA1139 (National institute of traditional...) |
| PRJNA627286 | SRA or Trace | Whole genome sequencing of SARS-cov-2 samples from different patients | Whole genome sequencing of SARS-cov-2 samples from different patients (University of Hong Kong) |
| PRJNA735058 | SRA or Trace | Whole-genome sequencing of SARS-CoV-2 in Al Samawah city | Whole-genome sequencing of SARS-CoV-2 in Al Samawah city (University of Sawa) |
| PRJNA806767 | SRA or Trace | Whole-genome sequencing results of SARS-CoV-2 | Whole-genome sequencing results of SARS-CoV-2 (Korea University College...) |
| PRJNA718341 | SRA or Trace | Wisconsin SARS-CoV-2 within host | Wisconsin SARS-CoV-2 within host (University of Wisconsin -...) |
| PRJNA639956 | SRA or Trace | deep mutational scanning of the SARS-CoV-2 RBD using yeast display of barcoded libraries | deep mutational scanning of the SARS-CoV-2 RBD using yeast display of barcoded libraries (Fred Hutchinson Cancer Research...) |
| PRJNA638039 | SRA or Trace | multiplex RPA based Nanopore sequencing for real-time detection of virus | multiplex RPA based Nanopore sequencing for real-time detection of virus (king abdullah university...) |
| PRJNA637892 | SRA or Trace | sars-cov2 sequencing | sars-cov2 sequencing (Research and Medical Analysis...) |
| PRJNA647057 | SRA or Trace | sequencing of SARS-Co-V2 isolates from Egypt | sequencing of SARS-Co-V2 isolates from Egypt (army) |
| PRJNA662596 | SRA or Trace | severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) surveillance in wastewater samples in the USA | severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) surveillance in wastewater samples in the USA (Arizona State University) |
| PRJNA688005 | SRA or Trace | studies of SARS-CoV-2 single nucleotide polymorphisms | studies of SARS-CoV-2 single nucleotide polymorphisms (Korea Research Institute...) |
| PRJNA648306 | SRA or Trace | studies of microbial diversity in COVID-19 patients | studies of microbial diversity in COVID-19 patients (Institute of Blood Transfusion,...) |
| PRJNA774274 | SRA or Trace | wastewater metagenome | Genome Trakr wastewater project: NJDA (New Jersey Department of...) |