GSE16556[Accession] - GEO DataSets - NCBI

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Select item 2000165561.

Role of Gcn5 in KCl stress adaptation in S. cerevisiae and S. pombe: transcriptional and genomic analyses

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Saccharomyces cerevisiae; Schizosaccharomyces pombe; Saccharomyces cerevisiae/Schizosaccharomyces pombe fusant

Type:: Expression profiling by array; Genome binding/occupancy profiling by genome tiling array

6 related Platforms
22 Samples

Download data: BAR, CEL

Series

Accession:: GSE16556

ID:: 200016556

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000077152.

[Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array

(Submitter supplied) Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® S. pombe Tiling 1.0FR Array is designed for identifying novel transcripts, mapping sites of protein/DNA interaction in chromatin immunoprecipitation (ChIP) experiments, and other whole-genome experiments. The S. pombe 1.0FR Array is a single array comprised of over 1.2 million perfect match/mismatch probe pairs tiled through the complete Schizosaccharomyces pombe genome. more...

Organism:: Schizosaccharomyces pombe

59 Series
2 Related Platforms
544 Samples

Platform

Accession:: GPL7715

ID:: 100007715

Select item 1000072503.

[Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array

(Submitter supplied) Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html BPMAP and other files can be downloaded from the Affymetrix Web site below. Protocol: Designed for identifying novel transcripts, mapping sites of protein/DNA interaction in chromatin immunoprecipitation (ChIP) experiments, and other whole-genome experiments Single array comprised of over 3.2 million perfect match/mismatch probe pairs tiled through the complete Saccharomyces cerevisiae genome. more...

Organism:: Saccharomyces cerevisiae

84 Series
1 Related Platform
740 Samples

Platform

Accession:: GPL7250

ID:: 100007250

Select item 1000034264.

Eurogentec AG S. pombe ORF array 10k (1st batch)

(Submitter supplied) 4976 ORFs spotted in duplicate on glass slide Keywords = yeast ORF DNA microarray Protocol: Primary PCR: The PCR reactions are performed using tagged genome specific primers in the presence of genomic DNA (provided by your laboratory). We normally achieve a success rate of 93 % of PCR reactions. For the failed PCR reactions we perform three different protocols of PCR conditions, which include different MgCl2 concentrations and different Taq polymerase. more...

Organism:: Schizosaccharomyces pombe

3 Series
6 Samples

Platform

Accession:: GPL3426

ID:: 100003426

Select item 1000034255.

Eurogentec AG S. pombe ORF array 11k (I100C)

(Submitter supplied) 11520 ORFs were spotted in duplicate on glass slide Protocol: Primary PCR: The PCR reactions are performed using tagged genome specific primers in the presence of genomic DNA (provided by your laboratory). We normally achieve a success rate of 93 % of PCR reactions. For the failed PCR reactions we perform three different protocols of PCR conditions, which include different MgCl2 concentrations and different Taq polymerase. more...

Organism:: Schizosaccharomyces pombe

6 Series
9 Samples

Platform

Accession:: GPL3425

ID:: 100003425

Select item 1000034246.

Eurogentec AG S. pombe ORF array 11k (L040B)

(Submitter supplied) Schizosaccharomyces pombe 4976 ORFs spotted in duplicate on glass slide Keywords = yeast ORF DNA microarray Protocol: Primary PCR: The PCR reactions are performed using tagged genome specific primers in the presence of genomic DNA (provided by your laboratory). We normally achieve a success rate of 93 % of PCR reactions. For the failed PCR reactions we perform three different protocols of PCR conditions, which include different MgCl2 concentrations and different Taq polymerase. more...

Organism:: Schizosaccharomyces pombe

4 Series
14 Samples

Platform

Accession:: GPL3424

ID:: 100003424

PubMed Similar studies

Select item 1000036907.

KI/Eurogentec S. cerevisiae 12.8K array (E150C)

(Submitter supplied) The cDNA array contains probe sets that detect entire open reading frame (ORF) of Saccharomyces cerevisiae. Each transcript is double spotted adjacent to each other. Protocol: See manufacturer's website

Organism:: Saccharomyces cerevisiae

2 Series
6 Samples

Platform

Accession:: GPL3690

ID:: 100003690

Select item 3004149108.

Sc Gcn5-myc enrichment KCl stress conditions

Organism:: Saccharomyces cerevisiae

Source name:: strain BQS1350 (ChIP fraction) (channel 1) strain By4742 (wild type control) (channel 2)

Platform:: GPL7250
Series:: GSE16514 GSE16556

Download data: BAR, CEL

Sample

Accession:: GSM414910

ID:: 300414910

Select item 3004149099.

Sc Gcn5-myc enrichment normal conditions

Organism:: Saccharomyces cerevisiae

Source name:: strain BQS1350 (ChIP fraction) (channel 1) strain By4742 (wild type control) (channel 2)

Platform:: GPL7250
Series:: GSE16514 GSE16556

Download data: BAR, CEL

Sample

Accession:: GSM414909

ID:: 300414909

Select item 30010683210.

Saccharomyces cerevisiae gcn5 mutant replicate 2

Organism:: Saccharomyces cerevisiae

Source name:: Saccharomyces cerevisiae gcn5 mutant strain 17285. (channel 1) Saccharomyces cerevisiae wild type strain By4742 (channel 2)

Platform:: GPL3690
Series:: GSE5218 GSE16556

Sample

Accession:: GSM106832

ID:: 300106832

Select item 30010683111.

Saccharomyces cerevisiae gcn5 mutant replicate 1

Organism:: Saccharomyces cerevisiae

Source name:: Saccharomyces cerevisiae gcn5 mutant strain 7285. (channel 1) Saccharomyces cerevisiae wild type strain By4741 (channel 2)

Platform:: GPL3690
Series:: GSE5218 GSE16556

Sample

Accession:: GSM106831

ID:: 300106831

Select item 30010683012.

Saccharomyces cerevisiae gcn5 mutant KCl treatment replicate 2

Organism:: Saccharomyces cerevisiae

Source name:: Saccharomyces cerevisiae gcn5 mutant strain 17285 treated with 1M KCl for 60min. (channel 1) Saccharomyces cerevisiae wild type strain By4742 treated with 1M KCl for 60min. (channel 2)

Platform:: GPL3690
Series:: GSE5218 GSE16556

Sample

Accession:: GSM106830

ID:: 300106830

Select item 30041491213.

Sp Gcn5-myc enrichment KCl stress conditions

Organism:: Saccharomyces cerevisiae/Schizosaccharomyces pombe fusant

Source name:: strain Hu2020 (ChIP fraction) (channel 1) strain Fy368 (wild type control) (channel 2)

Platform:: GPL7715
Series:: GSE16514 GSE16556

Download data: BAR, CEL

Sample

Accession:: GSM414912

ID:: 300414912

Select item 30010682914.

Saccharomyces cerevisiae gcn5 mutant KCl treatment replicate 1

Organism:: Saccharomyces cerevisiae

Source name:: Saccharomyces cerevisiae gcn5 mutant strain 7285 treated with 1M KCl for 60min. (channel 1) Saccharomyces cerevisiae wild type strain By4741 treated with 1M KCl for 60min. (channel 2)

Platform:: GPL3690
Series:: GSE5218 GSE16556

Sample

Accession:: GSM106829

ID:: 300106829

Select item 30041491115.

Sp Gcn5-myc enrichment normal conditions

Organism:: Saccharomyces cerevisiae/Schizosaccharomyces pombe fusant

Source name:: strain Hu2020 (ChIP fraction) (channel 1) strain Fy368 (wild type control) (channel 2)

Platform:: GPL7715
Series:: GSE16514 GSE16556

Download data: BAR, CEL

Sample

Accession:: GSM414911

ID:: 300414911

Select item 30010682616.

Saccharomyces cerevisiae wild type KCl treatment replicate 1

Organism:: Saccharomyces cerevisiae

Source name:: Saccharomyces cerevisiae strain By4741 treated with 1M KCl for 60min. (channel 1) Saccharomyces cerevisiae strain By4741 (channel 2)

Platform:: GPL3690
Series:: GSE5218 GSE16556

Sample

Accession:: GSM106826

ID:: 300106826

Select item 30010675417.

Saccharomyces cerevisiae wild type KCl treatment replicate 2

Organism:: Saccharomyces cerevisiae

Source name:: Saccharomyces cerevisiae strain By4742 treated with 1M KCl for 60min. (channel 1) Saccharomyces cerevisiae strain By4742 (channel 2)

Platform:: GPL3690
Series:: GSE5218 GSE16556

Sample

Accession:: GSM106754

ID:: 300106754

Select item 30010767918.

Schizosaccharomyces Pombe wild type strain KCl treatment, replicate 4

Organism:: Schizosaccharomyces pombe

Source name:: Schizosaccharomyces Pombe wild type strain Fy368 treated with 1M KCl for 60min. (channel 1) Schizosaccharomyces Pombe wild type strain Fy368 (channel 2)

Platform:: GPL3424
Series:: GSE5218 GSE16556

Sample

Accession:: GSM107679

ID:: 300107679

Select item 30010767719.

Schizosaccharomyces Pombe wild type strain KCl treatment, replicate 3

Organism:: Schizosaccharomyces pombe

Source name:: Schizosaccharomyces Pombe wild type strain Fy368 treated with 1M KCl for 60min. (channel 1) Schizosaccharomyces Pombe wild type strain Fy368 (channel 2)

Platform:: GPL3424
Series:: GSE5218 GSE16556

Sample

Accession:: GSM107677

ID:: 300107677

Select item 30011825720.

Schizosaccharomyces pombe gcn5 mutant compared to wt KCl treatment,replicate 1 (slide 6)

Organism:: Schizosaccharomyces pombe

Source name:: Schizosaccharomyces Pombe gcn5 mutant Hu0799 treated with KCl (channel 1) Schizosaccharomyces pombe wild type strain Fy368 treated with KCl for 60min (channel 2)

Platform:: GPL3425
Series:: GSE5218 GSE5227 GSE16556

Sample

Accession:: GSM118257

ID:: 300118257

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GSE16556[Accession] (29)
GEO DataSets
Homo sapiens pantothenate kinase 1 (PANK1), transcript variant alpha, mRNA
Homo sapiens pantothenate kinase 1 (PANK1), transcript variant alpha, mRNA
gi|328887886|ref|NM_148977.2|

Nucleotide
602464584F1 NIH_MGC_75 Homo sapiens cDNA clone IMAGE:4592685 5', mRNA sequence
602464584F1 NIH_MGC_75 Homo sapiens cDNA clone IMAGE:4592685 5', mRNA sequence
gi|13293819|gnl|dbEST|8058176|gb|BG 1.1|

Nucleotide
wg40d07.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapiens cDNA clone IMAGE:2367565 3',...
wg40d07.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapiens cDNA clone IMAGE:2367565 3', mRNA sequence
gi|5110682|gnl|dbEST|2652140|gb|AI7 .1|

Nucleotide
Dermochelys coriacea isolate H1 D-loop, partial sequence; mitochondrial
Dermochelys coriacea isolate H1 D-loop, partial sequence; mitochondrial
gi|2507149261|gb|OP716915.1|

Nucleotide

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