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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 04, 2008 |
| Title |
[Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Saccharomyces cerevisiae |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
Designed for identifying novel transcripts, mapping sites of protein/DNA interaction in chromatin immunoprecipitation (ChIP) experiments, and other whole-genome experiments
Single array comprised of over 3.2 million perfect match/mismatch probe pairs tiled through the complete Saccharomyces cerevisiae genome.
The array also contains probes to interrogate a 2-µm circle plasmid (NCBI Accession J01347).
Probes are tiled at an average of 5 base pair resolution, as measured from the central position of adjacent 25-mer oligos, creating an overlap of approximately 20 base pairs on adjacent probes.
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| Description |
Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
BPMAP and other files can be downloaded from the Affymetrix Web site below.
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| Web link |
http://www.affymetrix.com/products/arrays/specific/scerevisiae_tiling.affx
http://www.affymetrix.com/support/technical/libraryfilesmain.affx
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| Submission date |
Sep 04, 2008 |
| Last update date |
Jan 09, 2016 |
| Organization |
Affymetrix, Inc. |
| E-mail(s) |
geo@ncbi.nlm.nih.gov, support@affymetrix.com
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| Phone |
888-362-2447
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| URL |
http://www.affymetrix.com/index.affx
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| Street address |
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| City |
Santa Clara |
| State/province |
CA |
| ZIP/Postal code |
95051 |
| Country |
USA |
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| Samples (740)
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GSM286405, GSM286406, GSM294843, GSM294844, GSM294845, GSM294846
GSM294847, GSM294848, GSM294849, GSM294850, GSM294851, GSM294852, GSM294853, GSM294854, GSM298516, GSM298518, GSM298520, GSM298522, GSM306301, GSM306302, GSM306303, GSM306304, GSM306305, GSM318348, GSM318349, GSM318350, GSM318351, GSM318352, GSM318353, GSM318354, GSM318355, GSM343170, GSM343171, GSM409325, GSM409326, GSM409327, GSM409328, GSM409329, GSM409330, GSM409331, GSM409332, GSM409333, GSM409334, GSM409335, GSM409336, GSM409337, GSM409338, GSM409339, GSM409340, GSM409341, GSM409342, GSM409343, GSM409344, GSM409345, GSM409346, GSM414909, GSM414910, GSM419468, GSM419469, GSM419470, GSM419471, GSM419472, GSM419473, GSM419474, GSM419475, GSM419476, GSM456128, GSM456129, GSM456130, GSM456131, GSM456132, GSM456133, GSM456134, GSM456135, GSM456544, GSM456545, GSM456546, GSM456547, GSM456548, GSM456549, GSM456550, GSM456551, GSM456552, GSM456553, GSM471701, GSM471702, GSM471703, GSM471704, GSM471705, GSM471706, GSM471707, GSM471708, GSM471709, GSM471710, GSM471711, GSM474243, GSM498698, GSM498699, GSM498700, GSM498701, GSM525045, GSM525046, GSM525047, GSM525048, GSM525049, GSM525050, GSM525051, GSM525052, GSM525053, GSM525054, GSM525055, GSM525056, GSM525057, GSM525058, GSM525059, GSM525060, GSM525061, GSM525062, GSM525063, GSM525064, GSM525065, GSM525066, GSM525067, GSM525068, GSM525069, GSM525070, GSM525071, GSM525072, GSM525073, GSM525074, GSM525075, GSM525076, GSM543114, GSM543115, GSM543117, GSM543118, GSM543120, GSM543121, GSM543122, GSM561019, GSM561020, GSM578480, GSM578481, GSM578482, GSM578483, GSM578484, GSM578485, GSM578486, GSM586812, GSM586813, GSM586814, GSM586815, GSM591642, GSM591643, GSM591644, GSM591645, GSM591646, GSM591647, GSM591648, GSM591649, GSM591650, GSM591651, GSM613391, GSM613392, GSM613393, GSM613394, GSM613395, GSM613397, GSM613398, GSM613399, GSM675134, GSM675135, GSM675136, GSM675137, GSM675138, GSM696450, GSM696451, GSM707981, GSM707982, GSM707983, GSM707984, GSM739668, GSM739669, GSM739670, GSM739671, GSM739675, GSM739676, GSM739680, GSM739681, GSM739682, GSM739683, GSM739684, GSM739685, GSM739686, GSM739687, GSM739688, GSM739689, GSM739690, GSM739691, GSM739692, GSM739693, GSM739694, GSM739695, GSM739696, GSM739698, GSM739699, GSM739700, GSM739701, GSM743028, GSM743029, GSM743030, GSM743031, GSM832840, GSM832841, GSM832842, GSM832843, GSM832844, GSM832845, GSM832846, GSM832847, GSM832848, GSM832849, GSM832850, GSM832851, GSM832852, GSM897356, GSM897357, GSM897358, GSM897359, GSM897360, GSM897361, GSM897362, GSM897363, GSM897364, GSM897365, GSM897366, GSM897367, GSM897368, GSM897369, GSM897370, GSM897371, GSM897372, GSM897373, GSM897374, GSM897375, GSM956691, GSM956692, GSM956693, GSM956694, GSM956695, GSM956696, GSM956697, GSM956698, GSM956699, GSM956700, GSM956701, GSM956702, GSM968814, GSM968815, GSM968816, GSM968817, GSM968818, GSM968819, GSM968820, GSM968821, GSM968822, GSM968823, GSM968824, GSM968825, GSM968826, GSM968827, GSM968828, GSM968829, GSM968830, GSM968831, GSM968832, GSM1040497, GSM1040498, GSM1040499, GSM1059063, GSM1059064, GSM1059065, GSM1059066, GSM1059067, GSM1059068, GSM1061821, GSM1061822, GSM1061823, GSM1061824, GSM1061825, GSM1061826, GSM1133401, GSM1133402, GSM1133403, GSM1133404, GSM1133407, GSM1133408, GSM1215232, GSM1215233, GSM1215234, GSM1215235, GSM1215236, GSM1241133, GSM1241134, GSM1241135, GSM1241136, GSM1250147, GSM1250148, GSM1250149, GSM1250150, GSM1250151, GSM1326654, GSM1326655, GSM1326656, GSM1326657, GSM1326658, GSM1326659, GSM1331232, GSM1331233, GSM1331234, GSM1331235, GSM1357061, GSM1357062, GSM1357063, GSM1357064, GSM1357065, GSM1357066, GSM1357067, GSM1357068, GSM1357069, GSM1357070, GSM1357071, GSM1357072, GSM1357073, GSM1357074, GSM1357075, GSM1357076, GSM1357077, GSM1357078, GSM1357079, GSM1357080, GSM1357081, GSM1357082, GSM1357083, GSM1357084, GSM1357085, GSM1357086, GSM1357087, GSM1357088, GSM1357089, GSM1357090, GSM1357091, GSM1357092, GSM1357093, GSM1357094, GSM1357095, GSM1357096, GSM1357097, GSM1357098, GSM1367023, GSM1367024, GSM1367025, GSM1367026, GSM1381937, GSM1381938, GSM1381939, GSM1382937, GSM1382938, GSM1464143, GSM1464144, GSM1495689, GSM1495690, GSM1495691, GSM1495692, GSM1495693, GSM1495694, GSM1495695, GSM1495696, GSM1495697, GSM1495698, GSM1495699, GSM1495700, GSM1495701, GSM1495702, GSM1495703, GSM1495704, GSM1495705, GSM1495706, GSM1495707, GSM1495708, GSM1495709, GSM1495710, GSM1495711, GSM1495712, GSM1495713, GSM1495714, GSM1495715, GSM1495716, GSM1495717, GSM1495718, GSM1495719, GSM1495720, GSM1495721, GSM1495722, GSM1495723, GSM1495724, GSM1528122, GSM1528123, GSM1528124, GSM1528125, GSM1587429, GSM1587430, GSM1603299, GSM1603300, GSM1603301, GSM1603302, GSM1665835, GSM1665836, GSM1665837, GSM1665838, GSM1665839, GSM1665840, GSM1665841, GSM1665842, GSM1665843, GSM1665844, GSM1665845, GSM1665846, GSM1665847, GSM1665848, GSM1665849, GSM1665850, GSM1665851, GSM1665852, GSM1665853, GSM1665854, GSM1665855, GSM1665856, GSM1665857, GSM1665858, GSM1673685, GSM1673686, GSM1673687, GSM1673688, GSM1696183, GSM1696184, GSM1855591, GSM1855592, GSM1855593, GSM1858345, GSM1858346, GSM1858347, GSM1858348, GSM1858349, GSM1858350, GSM1858351, GSM1858352, GSM1858353, GSM1858354, GSM1858355, GSM1858356, GSM1858357, GSM1858358, GSM1858359, GSM1858360, GSM1858361, GSM1858362, GSM1858367, GSM1858368, GSM1858369, GSM1858370, GSM1858371, GSM1858372, GSM1858373, GSM1858374, GSM1858375, GSM1858376, GSM1858377, GSM1858378, GSM1858379, GSM1858380, GSM1861025, GSM1861026, GSM1861027, GSM1890772, GSM1890773, GSM1942165, GSM1942166, GSM1942167, GSM1942168, GSM2110112, GSM2110113, GSM2110114, GSM2110115, GSM2110116, GSM2110117, GSM2127836, GSM2127837, GSM2127838, GSM2127839...
Accession list truncated, click here to browse through all related public accessions
You can also download a list of all accessions here
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| Series (84)
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| GSE11340 |
DNA interactions with the ribosomal enhancer |
| GSE11621 |
Identification of genomic regions regulated by the Xrn1 and Upf1 proteins |
| GSE11800 |
Annotating Low Abundance and Transient RNAs in Yeast using Tiling Microarrays |
| GSE11802 |
Annotating Low Abundance and Transient RNAs in Yeast using Tiling Microarrays and Ultra High-throughput Sequencing |
| GSE12163 |
Nucleosome occupancy in wild type and histone H3(A111G) yeast |
| GSE12677 |
Unphosphorylated SR-like Protein Npl3 Stimulates RNA Polymerase II Elongation |
| GSE13615 |
Distinct differences in chromatin structure at telomeric X- and Y-elements in budding yeast. |
| GSE16258 |
A Top2 and Hmo1-mediated genome architectural pathway preventing chromosome fragility. |
| GSE16514 |
Genome-wide localization of Gcn5 under normal and stress conditions in S. cerevisiae and S. pombe |
| GSE16556 |
Role of Gcn5 in KCl stress adaptation in S. cerevisiae and S. pombe: transcriptional and genomic analyses |
| GSE16742 |
Histone H3 N-terminus Regulates Higher Order Structure of Yeast Heterochromatin |
| GSE17638 |
The Ess1 prolyl isomerase is required for the transcription termination of small non-coding RNAs via Nrd1 pathway |
| GSE18283 |
RNA Synthesis Precision is Regulated by Preinitiation Complex Turnover |
| GSE19061 |
Replication termination is mediated by Top2 and occurs at genomic loci containing pausing elements |
| GSE19120 |
Bulk Segregant Analysis Reveals a Novel Xylose Utilization Gene from Saccharomyces cerevisiae |
| GSE19121 |
Xylose Utilization Gene in Saccharomyces cerevisiae |
| GSE19962 |
Genome-wide analysis of SAS-I-mediated H4 K16 acetylation |
| GSE21014 |
Genomic analysis of replication profiles identifies RFCCtf18 as a key mediator of the replication stress response |
| GSE21814 |
γH2A is a component of yeast heterochromatin required for telomere elongation |
| GSE22626 |
Topoisomerase II binds nucleosome-free DNA and acts redundantly with Topoisomerase I to enhance recruitment of RNA Pol II in budding yeast |
| GSE23582 |
Chromatin-dependent binding of the S. cerevisiae HMGB protein Nhp6A affects nucleosome dynamics and transcription [Affymetrix] |
| GSE23608 |
Chromatin-dependent binding of the S. cerevisiae HMGB protein Nhp6A affects nucleosome dynamics and transcription |
| GSE23778 |
Nucleosome depletion in Saccharomyces cerevisiae terminator |
| GSE24040 |
Genome wide analysis of Saccharomyces nascent RNA |
| GSE24960 |
Genome-wide binding of THO and Sub2 in Saccharomyces cerevisiae |
| GSE27307 |
H3 Lysine 4 Is Acetylated at Active Gene Promoters and Is Regulated by H3 Lysine 4 Methylation |
| GSE28613 |
MEDIATOR subunit med8 binding in Saccharomyces cerevisiae |
| GSE29860 |
Spo11-accessory proteins link DNA double-strand break sites to the chromosome axis in early meiotic recombination |
| GSE30024 |
The replication checkpoint protects fork stability by releasing transcribed genes from nuclear pores. |
| GSE33686 |
dNTP pools determine fork progression and origin usage under replication stress |
| GSE36600 |
Genome-wide enrichment of Gcn5 and H3K18/H4K16 acetylation under physiological change of stress adaptation and stress recovery |
| GSE36601 |
Yeast under physiological changes of stress adaptation and stress recovery |
| GSE39078 |
Cohesin association to replication sites depends on Rad50 and promotes fork restart |
| GSE39139 |
Senataxin associates with replication forks to protect fork integrity across RNAPII transcribed genes |
| GSE42457 |
Budding yeast Wapl controls sister chromatid cohesion maintenance and the chromosome condensation status [PK-ChIP] |
| GSE42460 |
Budding yeast Wapl controls sister chromatid cohesion maintenance and the chromosome condensation status |
| GSE43236 |
Genome-Wide expression under osmotic stress conditions in Saccharomyces cerevisiae |
| GSE43384 |
Budding yeast ATM/ATR contribute to meiotic double-strand-break (DSB) homeostasis by down-regulating Rec114, an essential component of the DSB-machinery |
| GSE46260 |
DNA bending facilitates the error-free DNA damage tolerance pathway and upholds genome integrity |
| GSE46627 |
R-loops are marks for histone H3 Ser10 phosphorylation and chromatin compaction |
| GSE50185 |
ChIP-chip data of Npl3-Myc and Rrm3-Flag in wild-type and npl3∆ cells |
| GSE50187 |
Microarray and ChIP-chip of Rrm3-Flag in wild-type and npl3 cells, and ChIP-chip of Npl3-Myc in wild type cells |
| GSE51653 |
The yeast and human FACT complexes resolve R-loop-mediated transcription-replication conflicts |
| GSE54930 |
The Rio1 kinase downregulates RNA polymerase I to promote rDNA stability and segregation |
| GSE55184 |
ChIP-chip data of Rrm3-Flag in wild-type and rpb1-1 cells |
| GSE56171 |
HDACs act on ribosomal DNA to control the yeast replication program and the competition between origins for limiting initiation factors [BrdU-IP-chip] |
| GSE56700 |
ChIP-chip data of Thp1-Flag and Sac3-Flag in wild-type cells, and Rrm3-Flag in sac3∆ and thp1∆ cells |
| GSE56703 |
Microarray and ChIP-chip analyses of the THSC/TREX-2 complex |
| GSE57390 |
Transcriptome Wide Annotation of Eukaryotic RNase III Reactivity and Degradation Signals [Expression 1] |
| GSE57447 |
Transcriptome wide annotation of eukaryotic RNase III reactivity and degradation signals [Expression 2] |
| GSE57450 |
Transcriptome Wide Annotation of Eukaryotic RNase III Reactivity and Degradation Signals |
| GSE57619 |
HDACs act on ribosomal DNA to control the yeast replication program and the competition between origins for limiting initiation factors |
| GSE61030 |
H2B mono-ubiquitylation facilitates fork stalling and recovery during replication stress by coordinating Rad53 activation and chromatin assembly |
| GSE62516 |
The RSC Complex localizes to coding sequences to regulate Pol II and histone occupancy (Affymetrix) |
| GSE62522 |
The RSC Complex localizes to coding sequences to regulate Pol II and histone occupancy |
| GSE65701 |
Local regulation of the Srs2 helicase by the SUMO-like domain protein Esc2 promotes recombination at sites of stalled replication |
| GSE68214 |
Rad53-mediated regulation of Rrm3 and Pif1 DNA helicases contributes to prevention of aberrant fork transitions under replication stress. |
| GSE68486 |
ChIP-chip data of HA-Yra1 and Rrm3-Flag in wild-type and cells overexpressing YRA1 |
| GSE68488 |
YRA1 overexpression microarray and ChIP-chip |
| GSE72117 |
The Mot1 ATPase and Spt16 Histone Chaperone Cooperatively Regulate Transcription |
| GSE72241 |
Essential Roles of the Smc5/6 complex in Replication through Pausing Sites and Endogenous DNA Damage Tolerance |
| GSE75075 |
Analysis of a novel existence region of Sir3p in S. cerevisiae |
| GSE80007 |
Ctf4 links DNA replication with sister chromatid cohesion establishment by recruiting the Chl1 helicase to the replisome |
| GSE80235 |
The Mot1 ATPase and Spt16 Histone Chaperone Co-Regulate Transcription Through Preinitiation Complex Assembly and Nucleosome Organization |
| GSE80464 |
Evidence for cohesin sliding along budding yeast chromosomes |
| GSE80831 |
A Basic Domain in the Histone H2B N-terminal Tail is Important for Nucleosome Assembly by FACT |
| GSE88816 |
Genome-wide ChIP-chip Rad50 in early S-phase in the presence of hydroxyurea |
| GSE90157 |
Asymmetric down-regulation of tolerance to DNA damage at replication forks |
| GSE97046 |
Dormant origins and fork protection mechanisms rescue sister forks arrested by transcription |
| GSE100283 |
Transcriptome analysis of conditional mutations in the genes encoding six different essential proteins that influence Sen1-dependent termination in Saccharomyces cerevisiae |
| GSE101080 |
Genome-wide profiling of Ixr1 binding to the chromatin in Saccharomyces cerevisiae and the changes associated to cisplatin treatment. |
| GSE107318 |
The global map of Rio1 activity in Saccharomyces cerevisiae |
| GSE109654 |
Rad9/53BP1 controls the initiation and the elongation of DNA replication in budding yeast |
| GSE113835 |
SUMO-chain-regulated proteasomal degradation timing exemplified in DNA replication initiation |
| GSE114410 |
DNA topoisomerase and supercoil accumulation across yeast genome |
| GSE121004 |
Genome-wide profiling of Scc1 subunit in wild type cells and in cells in which chromatin structure is perturbed (histone H4 depletion). |
| GSE136601 |
Mec1 is activated at the onset of normal S phase by low dNTP pools impeding DNA replication [microarray] |
| GSE136605 |
Mec1 is activated at the onset of normal S phase by low dNTP pools impeding DNA replication |
| GSE138054 |
Division of Labor Between PCNA Loaders in DNA Replication and Sister Chromatid Cohesion Establishment [Affymetrix ChIP-chip] |
| GSE138056 |
Division of Labor Between PCNA Loaders in DNA Replication and Sister Chromatid Cohesion Establishment |
| GSE141712 |
The Mgs1/WRNIP1 ATPase is required to prevent a recombination salvage pathway at damaged replication forks |
| GSE147452 |
Smc5/6 functions with Sgs1-Top3-Rmi1 to complete chromosome replication at natural pause sites |
| GSE214908 |
Sen1 and Rrm3 ensure permissive topological conditions for replication termination [ChIP-chip] |
| GSE214930 |
Sen1 and Rrm3 ensure permissive topological conditions for replication termination |
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| Relations |
| Alternative to |
GPL9286 (Alternative CDF) |
| Supplementary data files not provided |
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