GEO DataSets

(Submitter supplied) Winter season with reduced day length (photoperiod); led to the growth cessation, dormancy induction and cold acclimation in woody perennial plants. To develop an understanding of the photoperiod signal transduction in Vitis riparia; shoot tip transcriptome profiling was performed under differential photoperiod treatments (long (LD, 15h) and short day (SD, 13h)) for 7 or 21 days after shoots reached 10 nodes (LD7, SD7, LD21 or SD21).

Organism:

Vitis riparia

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23121

12 Samples

Download data: TXT

(Submitter supplied) The transition of axillary grapevine buds from paradormancy to endodormancy is an important mechanism for winter survival. Maintenance of paradormancy and transition to endodormancy may be synchronized by factors including phytohormones, genes, transcription factors and other molecular regulators. In the present study we used age matched buds from vines subjected to 28 days of short day (SD; 13h) treatment or continued long day (LD; 15h) photoperiod for high throughput transcriptome profiling.

Organism:

Vitis riparia

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23121

6 Samples

Download data: TXT

(Submitter supplied) Dormant grapevine buds from 4 genotypes were collected over a variable time series after being exposed to growth room temperatures. Buds were collected from the field during winter and assessed for the loss of cold hardiness (deacclimation) in tandem with analysis of gene expression changes. DEGs are examined for various enriched pathways. Wild grapevines deacclimate faster than cultivated grapevines and the entire gene regulation cascade was also faster in wild grapevines. more...

Organism:

Vitis amurensis; Vitis vinifera; Vitis riparia

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL26020 GPL26019 GPL18580

189 Samples

Download data: TXT

(Submitter supplied) Drought has become an increasingly important constraint on grapevine sustainability due to global climate change. Vitis riparia, the only grapevine native to the upper Midwest region of the United States, is widely used in scion and rootstock breeding; however, it is not considered drought tolerant. In this study, RNA-Seq data were generated from grapevine root/shoot under WD and well-watered (control (C)) conditions to compare root signaling and shoot responses to water deficit.

Organism:

Vitis riparia

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24498

12 Samples

Download data: TXT

(Submitter supplied) Some insects can redirect plant development to form unique organs called galls, which provide these insects with unique, enhanced food and protection from enemies and the elements. Many galls resemble flowers or fruits, suggesting that elements of reproductive development may be involved. We addressed this possibility using RNA sequencing (RNAseq) to quantify the transcriptional responses of wild grapevine (Vitis riparia Michx.) leaves to a galling parasite, phylloxera (Daktulosphaira vitifoliae (Fitch 1855)). more...

Organism:

Vitis riparia

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24498

27 Samples

Download data: TXT

(Submitter supplied) Background: Grapevine is a major food crop that is affected by global climate change. Consistent with field studies, dehydration assays of grapevine leaves can reveal valuable information of the plant’s response at physiological, transcript, and protein levels. There are well-known differences in grapevine rootstocks responses to dehydration. We used time-series transcriptomic approaches combined with network analyses to elucidate and identify important physiological processes and network hubs that respond to dehydration in three different grapevine species differing in their drought tolerance. more...

Organism:

Vitis x champinii; Vitis riparia; Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL17894

30 Samples

Download data: PAIR

(Submitter supplied) Bud endodormancy induction response of two genotypes (‘Seyval’ a hybrid white wine grape and V. riparia, PI588259 a native north american species) was compared under long and short photoperiod. Three separate replicates (5 plants/replicate) were treated in each of 2 separate years (2007 and 2008) to generate paradormant (LD) and same aged endodormancy-induced (SD) buds for transcriptomic, proteomic and metabolomic analysis. more...

Organism:

Vitis vinifera; Vitis hybrid cultivar; Vitis riparia

Type:

Expression profiling by array

Platform:

GPL1320

167 Samples

Download data: CEL

(Submitter supplied) Plasmopara viticola (Berk. and Curt.) Berl. and de Toni is the agent of the destructive disease known as grapevine downy mildew, for the control of which intensive fungicide treatments are required. Natural sources of resistance are available in several wild Vitis species, which are being used in traditional breeding approaches. However, molecular switches, signals and effectors involved in resistance are poorly understood. more...

Organism:

Vitis riparia; Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL8025

48 Samples

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(Submitter supplied) A grape-bud-oriented genomic platform was produced for a large-scale comparative analysis of bud responses to two stimuli of grape-bud dormancy release, hydrogen cyanamide (HC) and heat shock (HS). The results suggested considerable similarity in bud response to the stimuli, both in the repertoire of responding genes and in the temporary nature of the transcriptome reprogramming. Nevertheless, the bud response to HC was slower, more condensed and stronger, as reflected by a higher number of regulated genes and a higher intensity of regulation compared to the response to HS.

Organism:

Vitis riparia; Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL8560

66 Samples

Download data: GPR

(Submitter supplied) Bud endodormancy induction response of two genotypes (‘Seyval’ a hybrid white wine grape and V. riparia, PI588259 a native north american species) was compared under long (15h) and short (13h) photoperiod. Three separate replicates (5 plants/replicate) were treated to generate paradormant (LD) and same aged endodormancy-induced (SD) buds for transcriptomic, proteomic and metabolomic analysis. Potted, spur-pruned two to six-year-old vines were removed from cold storage (Seyval 3-19-07; V. more...

Organism:

Vitis vinifera; Vitis hybrid cultivar; Vitis riparia

Type:

Expression profiling by array

Platform:

GPL1320

84 Samples

Download data: CEL

(Submitter supplied) This study investigated changes in gene expression of controlled environment chilled (4C) grape overwintering buds as they accumulated from 0 to 2000 chilling hours. Keywords: time course, chilling, endodormancy release, axillary bud, grape

Organism:

Vitis riparia; Vitis vinifera

Type:

Expression profiling by array

Platform:

GPL6275

15 Samples

Download data: TXT

(Submitter supplied) This study compares age matched V. riparia axillary buds at one time point during long photoperiod (paradormancy maintenance) and short photoperiod (endodormancy induced). Keywords: endodormancy, photoperiod, paradormancy, grape, axillary bud

Organism:

Vitis riparia

Type:

Expression profiling by array

Platforms:

GPL2525 GPL2526

4 Samples

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(Submitter supplied) References: Keilin T, Pang X, Venkateswari J, Halaly T, Crane O, Keren A, Ogrodovitch A, Ophir R, Volpin H, Galbraith D, Or E. Digital expression profiling of a grape-bud EST collection leads to new insight into molecular events during grape-bud dormancy release. Plant Science. 2007 Oct;173(4):446-457. Mathiason K, He D, Grimplet J, Venkateswari J, Galbraith DW, Or E, Fennell A. Transcript profiling in Vitis riparia during chilling requirement fulfillment reveals coordination of gene expression patterns with optimized bud break. more...

Organism:

Vitis vinifera; Vitis riparia

1 Series

66 Samples

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(Submitter supplied) 7920 Vitis vinifera cv. 'Perlette' clones (1248 natural dormancy cycle library,1920 young bud library, 2400 hydrogen cyanamide library, and 2352 control library); 1141 Vitis riparia Michx. (475 paradormant library, 666 endodormant library) Protocol: cDNAs spotted in SSC using a GeneMachines 'OmniGrid 100'

Organism:

Vitis vinifera; Vitis riparia

1 Series

15 Samples

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(Submitter supplied) http://keck.med.yale.edu/dnaarrays/printing.htm

Organism:

Vitis riparia

1 Series

2 Samples

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(Submitter supplied) http://keck.med.yale.edu/dnaarrays/printing.htm

Organism:

Vitis riparia

1 Series

2 Samples

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