GEO Browser - GEO

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19 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Mycobacterium tuberculosis variant bovis
GSE101963	The prominent transcriptional changes of Mycobacterium bovis BCG str. Tokyo 172 following induction by vitamin B1	Expression profiling by high throughput sequencing	Mycobacterium tuberculosis variant bovis	2	XLS SRA Run Selector	Ningning Song	Jul 28, 2017
GSE114949	The prominent transcriptional and metabolites changes of Mycobacterium bovis BCG str. Tokyo 172 induced by vitamin B1	Expression profiling by high throughput sequencing	Mycobacterium tuberculosis variant bovis	6	TXT SRA Run Selector	Ningning Song	May 08, 2019
GSE166137	The involvement of Mycobacterium type III-A CRISPR-Cas system in oxidative stress and intracellular fitness	Expression profiling by high throughput sequencing	Mycobacterium tuberculosis variant bovis	6	CSV SRA Run Selector	siyuan feng	Feb 05, 2021
GSE267014	Spermine-induced DNA methylation change in human macrophages	Methylation profiling by array	Bartonella henselae Bartonella quintana Campylobacter jejuni Cowpox virus Escherichia coli O157:H7 Francisella tularensis subsp. holarctica Francisella tularensis subsp. mediasiatica Francisella tularensis subsp. novicida Francisella tularensis subsp. tularensis Homo sapiens Leptospira interrogans Mammarenavirus choriomeningitidis Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium canetti Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Mycobacterium tuberculosis variant microti Orthohantavirus puumalaense Orthohantavirus seoulense Paslahepevirus balayani Rickettsia prowazekii Rickettsia typhi Salmonella enterica subsp. enterica serovar Typhimurium Staphylococcus aureus Streptobacillus moniliformis Toxoplasma gondii Yersinia enterocolitica Yersinia pestis Yersinia pseudotuberculosis	4	IDAT TXT	Hongde Li	May 13, 2024
GSE180658	Oxidative damage and delayed replication allow viable Mycobacterium tuberculosis to go undetected II	Expression profiling by high throughput sequencing	Mycobacterium tuberculosis variant bovis	13	TXT SRA Run Selector	Kohta Saito	Nov 24, 2021
GSE18909	Nicotinamide Starvation of Mycobacteria Defective for de novo NAD Biosynthesis	Expression profiling by array	Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis	6	MEV	Brian Weinrick	Feb 24, 2010
GSE121398	Mycofactocin is associated with ethanol metabolism in Mycobacteria	Expression profiling by array	Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis variant bovis Mycolicibacterium smegmatis	30	TXT	Hans-Joachim Mollenkopf	Apr 25, 2019
GSE15164	Mycobacterium bovis transcriptional response to nitric oxide	Expression profiling by array	Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis	4	GPR	Germán Rehren	Dec 17, 2009
GSE222247	Mycobacterial DNA binding protein 1 (MDP1) mediates gene regulation in Mycobacterium tuberculosis variant Bacillus Calmette-Guerin	Expression profiling by high throughput sequencing	Mycobacterium tuberculosis variant bovis	27	CSV	Shaban Amina Kaboso	Aug 01, 2023
GSE6889	M. tuberculosis-M. bovis transcriptional comparison	Expression profiling by array	Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis	4	GPR	Germán Rehren	Jan 31, 2007
GSE232691	Impact of the vitamin B12 on the transcriptional regulation of the Mycobacterium tuberculosis Complex	Expression profiling by high throughput sequencing	Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis	12	WIG	Jesus Gonzalo-Asensio	Dec 22, 2023
GSE65290	General Approach for Tetramer Based Identification of Autoantigen Reactive B Cells: Characterization of La and snRNP Reactive B Cells in Autoimmune BXD2 Mice	Protein profiling by protein array	Betapolyomavirus macacae Caprine arthritis encephalitis virus Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	29	XLSX	Jennie Hamilton	Feb 28, 2015
GSE77765	Detection of a Yersinia pestis homologue in rodent samples	Genome variation profiling by array	Apodemus sylvaticus Bartonella henselae Bartonella quintana Campylobacter jejuni Cowpox virus Escherichia coli O157:H7 Francisella tularensis subsp. holarctica Francisella tularensis subsp. mediasiatica Francisella tularensis subsp. novicida Francisella tularensis subsp. tularensis Leptospira interrogans Mammarenavirus choriomeningitidis Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium canetti Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Mycobacterium tuberculosis variant microti Orthohantavirus puumalaense Orthohantavirus seoulense Paslahepevirus balayani Rattus norvegicus Rattus rattus Rickettsia prowazekii Rickettsia typhi Salmonella enterica subsp. enterica serovar Typhimurium Staphylococcus aureus Streptobacillus moniliformis Toxoplasma gondii Yersinia enterocolitica Yersinia pestis Yersinia pseudotuberculosis	65	TXT	Tim Giles	Feb 11, 2016
GSE17835	Comparison of the responses of Mycobacterium tuberculosis and Mycobacterium bovis to nutrient starvation	Expression profiling by array	Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis	42	GPR	Saleena Ghanny	Apr 02, 2018
GSE51881	Comparative transcriptomics of Mycobacterium bovis and Mycobacterium marinum	Expression profiling by high throughput sequencing Other	Mycobacterium marinum Mycobacterium tuberculosis variant bovis	8	TXT SRA Run Selector	Robin Allshire	Sep 08, 2014
GSE11315	BCG vaccine strains lack narK2 and narX induction and exhibit altered phenotypes during dormancy	Expression profiling by array	Mycobacterium tuberculosis CDC1551 Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis variant bovis Mycobacterium tuberculosis variant bovis BCG	30	TXT	Ryan William Honaker	May 03, 2008
GSE65277	Autoimmune peptide antigen reactivity in normal B6 mice Pepperchip 2.0	Protein profiling by protein array	Betapolyomavirus macacae Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	2	XLSX	Jennie Hamilton	Feb 28, 2015
GSE65278	Autoimmune peptide antigen reactivity in BXD2 mice with spontaneous systemic autoimmune disease Pepperchip 2.0	Protein profiling by protein array	Betapolyomavirus macacae Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	2	XLSX	Jennie Hamilton	Feb 28, 2015
GSE141513	Amino acid metabolism regulated by DNA Methylation in Mycobacterium bovis BCG str. Tokyo 172 induced by vitamins	Expression profiling by high throughput sequencing	Mycobacterium tuberculosis variant bovis	6	TXT SRA Run Selector	Ningning Song	Jan 16, 2020