GEO help: Mouse over screen elements for information.
Status
Public on Oct 08, 2008
Title
Agilent-015064 D. rerio (Zebrafish) Oligo Microarray 4x44K G2519F (Probe Name version)
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Danio rerio Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G2519F
Description
Submission date
Sep 12, 2008
Last update date
Apr 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (411)
GSM440776 , GSM440777 , GSM440778 , GSM440779 , GSM440780 , GSM440781
GSM440782 ,
GSM440783 ,
GSM440784 ,
GSM440785 ,
GSM440786 ,
GSM440787 ,
GSM440788 ,
GSM440789 ,
GSM440790 ,
GSM440791 ,
GSM440792 ,
GSM440793 ,
GSM440794 ,
GSM440795 ,
GSM440796 ,
GSM440797 ,
GSM440798 ,
GSM440799 ,
GSM440800 ,
GSM440801 ,
GSM440802 ,
GSM440803 ,
GSM440804 ,
GSM440805 ,
GSM440806 ,
GSM440807 ,
GSM440808 ,
GSM440809 ,
GSM440810 ,
GSM440811 ,
GSM440812 ,
GSM440813 ,
GSM440814 ,
GSM440815 ,
GSM440816 ,
GSM440817 ,
GSM440818 ,
GSM440819 ,
GSM440820 ,
GSM440821 ,
GSM440822 ,
GSM440823 ,
GSM440824 ,
GSM440825 ,
GSM440826 ,
GSM440827 ,
GSM440828 ,
GSM440829 ,
GSM440830 ,
GSM440831 ,
GSM440832 ,
GSM440833 ,
GSM440834 ,
GSM440835 ,
GSM440836 ,
GSM440837 ,
GSM440838 ,
GSM440839 ,
GSM440840 ,
GSM440841 ,
GSM440842 ,
GSM440843 ,
GSM440844 ,
GSM440845 ,
GSM440858 ,
GSM440859 ,
GSM440860 ,
GSM440861 ,
GSM440862 ,
GSM440863 ,
GSM440866 ,
GSM440867 ,
GSM440868 ,
GSM440869 ,
GSM440870 ,
GSM440871 ,
GSM440872 ,
GSM440873 ,
GSM440874 ,
GSM440875 ,
GSM440876 ,
GSM440877 ,
GSM443828 ,
GSM443829 ,
GSM443830 ,
GSM443831 ,
GSM461401 ,
GSM461402 ,
GSM461403 ,
GSM513128 ,
GSM513129 ,
GSM513130 ,
GSM513131 ,
GSM513132 ,
GSM513133 ,
GSM513134 ,
GSM513135 ,
GSM513136 ,
GSM513137 ,
GSM513138 ,
GSM513139 ,
GSM513140 ,
GSM513141 ,
GSM513142 ,
GSM513143 ,
GSM513144 ,
GSM513145 ,
GSM655039 ,
GSM655040 ,
GSM735787 ,
GSM735788 ,
GSM735789 ,
GSM735790 ,
GSM735791 ,
GSM735792 ,
GSM735793 ,
GSM735794 ,
GSM735795 ,
GSM883421 ,
GSM883422 ,
GSM883423 ,
GSM883424 ,
GSM933389 ,
GSM933390 ,
GSM933391 ,
GSM933392 ,
GSM933393 ,
GSM933394 ,
GSM933410 ,
GSM933411 ,
GSM933412 ,
GSM933413 ,
GSM933414 ,
GSM933440 ,
GSM933441 ,
GSM933442 ,
GSM933443 ,
GSM933444 ,
GSM933445 ,
GSM933446 ,
GSM933447 ,
GSM933448 ,
GSM933449 ,
GSM933450 ,
GSM933451 ,
GSM933452 ,
GSM933453 ,
GSM933454 ,
GSM933455 ,
GSM933456 ,
GSM933457 ,
GSM933458 ,
GSM933459 ,
GSM933460 ,
GSM933461 ,
GSM933462 ,
GSM933463 ,
GSM933464 ,
GSM933465 ,
GSM933466 ,
GSM933467 ,
GSM933468 ,
GSM933469 ,
GSM933470 ,
GSM933471 ,
GSM933472 ,
GSM933473 ,
GSM933474 ,
GSM933475 ,
GSM933476 ,
GSM933477 ,
GSM933478 ,
GSM933479 ,
GSM933480 ,
GSM933481 ,
GSM933482 ,
GSM933483 ,
GSM933484 ,
GSM933485 ,
GSM933486 ,
GSM933487 ,
GSM933488 ,
GSM933489 ,
GSM933490 ,
GSM933491 ,
GSM933492 ,
GSM933493 ,
GSM933494 ,
GSM933495 ,
GSM933496 ,
GSM933497 ,
GSM933498 ,
GSM933499 ,
GSM933500 ,
GSM933501 ,
GSM933502 ,
GSM933503 ,
GSM933504 ,
GSM933505 ,
GSM933506 ,
GSM933507 ,
GSM933508 ,
GSM933509 ,
GSM933510 ,
GSM933511 ,
GSM933512 ,
GSM933513 ,
GSM933514 ,
GSM933515 ,
GSM933516 ,
GSM933517 ,
GSM933518 ,
GSM933519 ,
GSM933520 ,
GSM933521 ,
GSM933522 ,
GSM933523 ,
GSM933524 ,
GSM933525 ,
GSM933526 ,
GSM933527 ,
GSM933528 ,
GSM933529 ,
GSM933530 ,
GSM933531 ,
GSM933532 ,
GSM933533 ,
GSM933534 ,
GSM933535 ,
GSM933536 ,
GSM933537 ,
GSM933538 ,
GSM933539 ,
GSM933540 ,
GSM933541 ,
GSM933542 ,
GSM933543 ,
GSM933544 ,
GSM933545 ,
GSM933546 ,
GSM933547 ,
GSM933548 ,
GSM933549 ,
GSM933550 ,
GSM933551 ,
GSM933552 ,
GSM933553 ,
GSM933554 ,
GSM933555 ,
GSM933556 ,
GSM933557 ,
GSM933558 ,
GSM933559 ,
GSM933560 ,
GSM933561 ,
GSM933562 ,
GSM933563 ,
GSM933564 ,
GSM933565 ,
GSM933566 ,
GSM933567 ,
GSM933568 ,
GSM933569 ,
GSM933570 ,
GSM933571 ,
GSM933572 ,
GSM933573 ,
GSM933574 ,
GSM933575 ,
GSM933576 ,
GSM933577 ,
GSM933578 ,
GSM933579 ,
GSM933580 ,
GSM933581 ,
GSM933582 ,
GSM933583 ,
GSM933584 ,
GSM933585 ,
GSM933586 ,
GSM933587 ,
GSM933588 ,
GSM933589 ,
GSM933590 ,
GSM933591 ,
GSM933592 ,
GSM933593 ,
GSM933594 ,
GSM933595 ,
GSM933596 ,
GSM933597 ,
GSM933598 ,
GSM933599 ,
GSM933605 ,
GSM933606 ,
GSM933607 ,
GSM933608 ,
GSM933609 ,
GSM933615 ,
GSM933616 ,
GSM933617 ,
GSM933618 ,
GSM933619 ,
GSM933620 ,
GSM933621 ,
GSM933622 ,
GSM933623 ,
GSM933624 ,
GSM933625 ,
GSM933626 ,
GSM933627 ,
GSM933628 ,
GSM933629 ,
GSM933630 ,
GSM933631 ,
GSM933632 ,
GSM933633 ,
GSM933634 ,
GSM933635 ,
GSM933636 ,
GSM933637 ,
GSM933638 ,
GSM933639 ,
GSM933640 ,
GSM933641 ,
GSM933642 ,
GSM933643 ,
GSM933644 ,
GSM933645 ,
GSM933646 ,
GSM933647 ,
GSM933648 ,
GSM933649 ,
GSM933650 ,
GSM933651 ,
GSM933652 ,
GSM933653 ,
GSM933654 ,
GSM933655 ,
GSM933656 ,
GSM933657 ,
GSM933658 ,
GSM933659 ,
GSM933660 ,
GSM933661 ,
GSM933662 ,
GSM933663 ,
GSM933664 ,
GSM933665 ,
GSM933666 ,
GSM933667 ,
GSM933668 ,
GSM933669 ,
GSM1008621 ,
GSM1008622 ,
GSM1008623 ,
GSM1008624 ,
GSM1008625 ,
GSM1008626 ,
GSM1008627 ,
GSM1008628 ,
GSM1008629 ,
GSM1008630 ,
GSM1008631 ,
GSM1008632 ,
GSM1008633 ,
GSM1008634 ,
GSM1008635 ,
GSM1008636 ,
GSM1095233 ,
GSM1095234 ,
GSM1095235 ,
GSM1095236 ,
GSM1095237 ,
GSM1095238 ,
GSM1095239 ,
GSM1095240 ,
GSM1095241 ,
GSM1095242 ,
GSM1095243 ,
GSM1095244 ,
GSM1095245 ,
GSM1095246 ,
GSM1095247 ,
GSM1095248 ,
GSM1095249 ,
GSM1095250 ,
GSM1095251 ,
GSM1095252 ,
GSM1095253 ,
GSM1095254 ,
GSM1095255 ,
GSM1095256 ,
GSM1095257 ,
GSM1095258 ,
GSM1095259 ,
GSM1095260 ,
GSM1095261 ,
GSM1095262 ,
GSM1261573 ,
GSM1261574 ,
GSM1261575 ,
GSM1261576 ,
GSM1261577 ,
GSM1261578 Series (15)
GSE17655 Experiment 1: Developmental time curve in wild-type and MZspg embryos
GSE17656 Experiment 3: Comparison of MZspg and Mspg transcriptomes
GSE17659 Experiment 2: Pou5f1 and Sox2 overexpression experiments with or without protein synthesis inhibition
GSE17667 Pou5f1 transcription targets in zebrafish
GSE17773 Gene expression analysis of zebrafish embryos depleted of arrb1 and/or arrb2 at 12 hpf
GSE18522 Zebrafish embryos: Control vs. 5-aza-2'-deoxycytidine treated
GSE20460 Danio spinal cord injury
GSE26609 Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm
GSE29669 Transcriptomic analysis of the zebrafish inner ear points to growth hormone mediated regeneration following acoustic trauma
GSE36191 Transcriptome analysis of the uninjured Muller glia (MG) and MG derived retinal progenitors at 4 day post injured zebrafish retina
GSE38070 Discovery and validation of gene classifiers for endocrine disrupting chemicals in Zebrafish (Danio rerio)
GSE41107 Experiment 2: Pou5f1 and Sox2 overexpression experiments protein synthesis inhibition
GSE44982 Experiment 1: Overexpression experiments at 30% epiboly MZspg and WT embryos with or without protein synthesis inhibition
GSE45013 Transcriptional targets of Pou5f1 in Zebrafish (Danio Rerio)
GSE52229 Knockdown of a zebrafish aryl hydrocarbon receptor repressor (ahrra) affects expression of genes related to photoreceptor development and hematopoiesis.
Relations Alternative to
GPL6563
Data table header descriptions ID Agilent feature number
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeq Accession number
GB_ACC GenBank Accession number
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
Data table ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE A_15_P100001
A_15_P100001
FALSE
tc|TC449949
chr23:30123355-30123414
Rep: Zgc:56565 - Danio rerio (Zebrafish) (Brachydanio rerio), partial (84%) [TC449949]
TATATTTCTTGATGGTTATCAACGGCTAAAGGACTGTCAACCATGTTTCTTCCGAGAGTG
A_15_P100002
A_15_P100002
FALSE
NM_200289 NM_200289 555385 siae
sialic acid acetylesterase
Dr.78570
ENSDART00000059311
ref|NM_200289|ref|NM_001044331|ens|ENSDART00000059311|gb|BC049448
chr18:34938379-34938438
Danio rerio sialic acid acetylesterase (siae), transcript variant 1, mRNA [NM_200289]
GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0008150(biological_process)
GCTGAAGTCTACCGCAGTATTTCTACTGAGTTCAATAGTTTGCACTTTATGATTATGATT
A_15_P100003
A_15_P100003
FALSE
XM_688466 XM_688466 Dr.115494
ENSDART00000115118
ens|ENSDART00000115118|gb|BE017922|tc|TC395883|ref|XM_688466
chr6:22506307-22501861
tensin 1 [Source:HGNC Symbol;Acc:11973] [ENSDART00000115118]
CGTTCCAAACACCAACAGCACTATCTAATGCTTAATCTCAGTGAACGGAGGCATGACATC
A_15_P100004
A_15_P100004
FALSE
unmapped
AAATCATCTTTCTAGAGCTAGCAGATAGCACGGTCTGACATCTACCTTCACACAAATAAT
A_15_P100005
A_15_P100005
FALSE
NM_212915 NM_212915 405851 spast
spastin
Dr.30307
ENSDART00000035150
ref|NM_212915|ens|ENSDART00000035150|gb|AY304504|gb|BC067715
chr1:51530761-51530702
Danio rerio spastin (spast), mRNA [NM_212915]
GO:0000166(nucleotide binding)|GO:0001578(microtubule bundle formation)|GO:0005524(ATP binding)|GO:0005634(nucleus)|GO:0005737(cytoplasm)|GO:0005815(microtubule organizing center)|GO:0005856(cytoskeleton)|GO:0005874(microtubule)|GO:0006200(ATP catabolic process)|GO:0007049(cell cycle)|GO:0007275(multicellular organismal development)|GO:0007399(nervous system development)|GO:0007416(synapse assembly)|GO:0008017(microtubule binding)|GO:0008152(metabolic process)|GO:0008568(microtubule-severing ATPase activity)|GO:0015630(microtubule cytoskeleton)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016787(hydrolase activity)|GO:0017111(nucleoside-triphosphatase activity)|GO:0021955(central nervous system neuron axonogenesis)|GO:0030154(cell differentiation)|GO:0031117(positive regulation of microtubule depolymerization)|GO:0031122(cytoplasmic microtubule organization)|GO:0034214(protein hexamerization)|GO:0043014(alpha-tubulin binding)|GO:0043066(negative regulation of apoptotic process)|GO:0045773(positive regulation of axon extension)|GO:0048471(perinuclear region of cytoplasm)|GO:0048487(beta-tubulin binding)|GO:0048676(axon extension involved in development)|GO:0051013(microtubule severing)|GO:0051260(protein homooligomerization)|GO:0051301(cell division)
TCAGCAGGGGGCGTCATCTCAGTGTCTTCCTCAAGAAACTTTCCTGATGTAGAAATGTTT
A_15_P100006
A_15_P100006
FALSE
tc|TC380994
chr6:33734182-33734241
Rep: Homolog of Brachydanio rerio "Adaptor-related protein complex 1 mu 1 subunit. - Takifugu rubripes, partial (15%) [TC380994]
ACACGCTGCATTTTCTCACAGCGCAGAAAATTTACAAAACGCGCTGCATTTTCTCACAAC
A_15_P100007
A_15_P100007
FALSE
NM_001025179 NM_001025179 574000 tnnt2d
troponin T2d, cardiac
Dr.88652
ENSDART00000139235
ref|NM_001025179|ens|ENSDART00000139235|ens|ENSDART00000104297|ens|ENSDART00000048642
chr25:20718007-20718066
Danio rerio troponin T2d, cardiac (tnnt2d), mRNA [NM_001025179]
GO:0003674(molecular_function)|GO:0005575(cellular_component)|GO:0008150(biological_process)
TGTTTGTTTGATGGAGATACGTTTAAAATCATTTTTCTGAACGTACAAACATGCTCTGGC
A_15_P100008
A_15_P100008
FALSE
NM_213001 NM_213001 406274 klhl20
kelch-like 20 (Drosophila)
Dr.1761
ENSDART00000111099
ref|NM_213001|ens|ENSDART00000111099|ens|ENSDART00000146624|gb|BC057505
chr2:33844586-33844645
Danio rerio kelch-like 20 (Drosophila) (klhl20), mRNA [NM_213001]
GO:0005575(cellular_component)|GO:0008150(biological_process)
AACGAACACCTTTGTTTTCTCACAAAACAGTTCTGTGTTCTAATCTTGGTGTTGAAATAC
A_15_P100009
A_15_P100009
FALSE
tc|TC397736
chr13:424310-424251
Rep: P47 - Adoxophyes honmai nucleopolyhedrovirus, partial (5%) [TC397736]
AGGATTGTTTTTTCGTTTTGAATATCGTAGCCTAAATGTTGTCTTCCATGTGAATACCAC
A_15_P100010
A_15_P100010
FALSE
NM_213126 NM_213126 791742 b2ml
beta-2-microglobulin, like
Dr.77427
ENSDART00000124748
ref|NM_213126|ens|ENSDART00000124748|ens|ENSDART00000139649|gb|BC057435
chr8:53218861-53218920
Danio rerio beta-2-microglobulin, like (b2ml), mRNA [NM_213126]
GO:0002474(antigen processing and presentation of peptide antigen via MHC class I)|GO:0006955(immune response)|GO:0042612(MHC class I protein complex)
AGCCTGAATGTTCGAGCGGGCACTGATATTTTGTTTTAAATAACTCCACATTTTAAAAAG
A_15_P100011
A_15_P100011
FALSE
NM_001002497 NM_001002497 436770 dctn5
dynactin 5
Dr.75282
ENSDART00000010944
ref|NM_001002497|ens|ENSDART00000010944|gb|BC076304|tc|TC422493
chr3:35636242-35636183
Danio rerio dynactin 5 (dctn5), mRNA [NM_001002497]
GO:0005575(cellular_component)|GO:0008152(metabolic process)|GO:0016740(transferase activity)
AAACTGTACCATTTCTTCAACACTAAACATTTTCTGTATGCAAAGCCAGATTACAGATGG
A_15_P100012
A_15_P100012
FALSE
NM_001007415 NM_001007415 492774 glmna
glomulin, FKBP associated protein a
Dr.9109
ENSDART00000081094
ref|NM_001007415|ens|ENSDART00000081094|ens|ENSDART00000145770|gb|BC085370
chr2:10649114-10649173
Danio rerio glomulin, FKBP associated protein a (glmna), mRNA [NM_001007415]
GO:0005575(cellular_component)
CTGTGAGGGAAATGTTTCGGCAGTGCTCTTCTCTGATTTTCCTACGTTAAATGATCCCTT
A_15_P100013
A_15_P100013
FALSE
chr13:025794457-025794395
AACTGTGTGATTTGTGCAGCTACAAGCTATCTTCTGAGTAGCTTATAAATGTTTCTACAA
A_15_P100014
A_15_P100014
FALSE
NM_001030106 NM_001030106 556909 fbxo22
F-box protein 22
Dr.133228
ENSDART00000075538
ref|NM_001030106|ens|ENSDART00000075538|tc|TC375846
chr7:31301483-31303332
Danio rerio F-box protein 22 (fbxo22), mRNA [NM_001030106]
CACTTCTGCAAAAGAGCTTCAGTGACACGGCAATGGAGGAGGCAAGGGTTGAATAATAAT
A_15_P100015
A_15_P100015
FALSE
NM_200764 NM_200764 393737 trappc4
trafficking protein particle complex 4
Dr.82687
ENSDART00000033411
ref|NM_200764|ens|ENSDART00000033411|gb|BC059594|tc|TC380759
chr15:9457057-9456998
Danio rerio trafficking protein particle complex 4 (trappc4), mRNA [NM_200764]
GO:0005801(cis-Golgi network)|GO:0006810(transport)|GO:0006888(ER to Golgi vesicle-mediated transport)
CTGTTACCAGAAAATGAAAAGTCTATACCTTGGATCTGTAGTTTGGGTCCAAAATGTGCT
A_15_P100016
A_15_P100016
FALSE
CK362685 Dr.90589
gb|CK362685
Zv9_scaffold3485:174669-174728
AGENCOURT_17185635 NIH_ZGC_4 Danio rerio cDNA clone IMAGE:7088994 5', mRNA sequence [CK362685]
AAAGCGTATTGTAGTGGACTAGATTCAGATGTTAGTAGATGTGGTTAGTAGATGTTGTGT
A_15_P100017
A_15_P100017
FALSE
XM_692631 569257 si:dkey-65b12.4
si:dkey-65b12.4
ENSDART00000083665
ens|ENSDART00000083665|ens|ENSDART00000147299|tc|TC367556|tc|TC405041
chr5:43405610-43405669
WD repeat domain 66 [Source:HGNC Symbol;Acc:28506] [ENSDART00000083665]
GO:0005509(calcium ion binding)
GCTATGCTGAAACCAGAAATTATGTGACAGACATCGATCTGGAGGAGTTCATTAGGCTGT
A_15_P100018
A_15_P100018
FALSE
tc|TC447534
chr15:24652255-24652198
Rep: Oxidoreductase/nitrogenase, component 1 - Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z), partial (6%) [TC447534]
CCTTTGAACTGACTGGTTAATAATATGATCCTGTCTTTATAGTGTCCTTGCACCAGACAC
A_15_P100019
A_15_P100019
FALSE
NM_001081748 NM_001081748 558806 cacnb2b
calcium channel, voltage-dependent, beta 2b
Dr.83051
ENSDART00000126594
ref|NM_001081748|ref|NM_001166324|ens|ENSDART00000126594|ens|ENSDART00000123495
chr2:31216424-31216613
Danio rerio calcium channel, voltage-dependent, beta 2b (cacnb2b), transcript variant 1, mRNA [NM_001081748]
GO:0005245(voltage-gated calcium channel activity)|GO:0005575(cellular_component)|GO:0006816(calcium ion transport)|GO:0051925(regulation of calcium ion transport via voltage-gated calcium channel activity)|GO:0070588(calcium ion transmembrane transport)
AAAGCTCTGTTTGATTATTTAAACACAGATTTGAAGGAAGATAACTATCACCCGAGTGAC
A_15_P100020
A_15_P100020
FALSE
NM_001177343 NM_001177343 100384900 ugt2a3
UDP glucuronosyltransferase 2 family, polypeptide A3
Dr.77425
ref|NM_001177343|gb|GU299126|gb|GU299127|gb|BC154165
chr5:72970345-72970286
Danio rerio UDP glucuronosyltransferase 2 family, polypeptide A3 (ugt2a3), mRNA [NM_001177343]
GO:0008152(metabolic process)|GO:0016740(transferase activity)|GO:0016757(transferase activity, transferring glycosyl groups)|GO:0016758(transferase activity, transferring hexosyl groups)
ACGCTCACTGATGAAGTGTGTAAAGGAATGTTCAAGGAGGATCTCCTACAAATGCTTCGG
21570 8733 Kbytes .Supplementary data files not provided
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