Search Toolkit Book for CGeneModelTrack

#include <gui/widgets/seq_graphic/gene_model_track.hpp>

Inheritance diagram for CGeneModelTrack:

Collaboration diagram for CGeneModelTrack:

Public Types
enum	EJobType { eJob_LandMarkGenes , eJob_MainFeats , eJob_GeneProducts , eJob_CDSProduct_Feats , eJob_FeatProducts }

Public Types inherited from CGlyphContainer
typedef vector< CRef< CCommentGlyph > >	TComments

typedef set< string >	THighlights

typedef map< string, THighlights >	TKeyHighlights

Public Types inherited from CLayoutTrack
enum	FTrackAttr { fMovable = 1 << 0 , fCollapsible = 1 << 1 , fFrameVisible = 1 << 2 , fShowTitle = 1 << 3 , fShowAlways = 1 << 4 , fFullTrack = 1 << 5 , fNavigable = 1 << 6 , fShowIcons = 1 << 7 , fDefaultAttr }

typedef vector< CConstRef< CSeqGlyph > >	TLayObjVector

typedef unsigned	TTrackAttrFlags

typedef list< CRef< CLayoutTrack > >	TLayoutTracks

typedef map< string, string >	TKeyValuePairs

Public Types inherited from CSeqGlyph
enum	ENeighbours { eNghbrs_None = 0x0 , eNghbrs_Left = 0x1 , eNghbrs_Right = 0x2 , eNghbrs_Both = 0x3 }

typedef vector< CHTMLActiveArea >	TAreaVector

typedef list< CRef< CSeqGlyph > >	TObjects

typedef list< CConstRef< CSeqGlyph > >	TConstObjects

Public Types inherited from CObject
enum	EAllocFillMode { eAllocFillNone = 1 , eAllocFillZero , eAllocFillPattern }
	Control filling of newly allocated memory. More...

typedef CObjectCounterLocker	TLockerType
	Default locker type for CRef. More...

typedef atomic< Uint8 >	TCounter
	Counter type is CAtomiCounter. More...

typedef Uint8	TCount
	Alias for value type of counter. More...

Public Types inherited from CEventHandler
enum	EDispatch { eDispatch_SelfOnly , eDispatch_AllHandlers , eDispatch_FirstHandler , eDispatch_Default = eDispatch_AllHandlers }
	enum controlling dispatching strategies More...

enum	EPoolName { ePool_Default = 0 , ePool_Parent , ePool_Child , ePool_Sibling , ePool_NextAvailable }
	Identifiers for standard pools. More...

typedef vector< CEventHandler * >	TListeners

typedef map< int, TListeners >	TPools

typedef list< AutoPtr< SPostRequest > >	TPostRequests

typedef std::map< CEventHandler *, int >	THandlerToCount

typedef void(*	FOnPostCallback) ()

Public Types inherited from IAsn1Generator
enum	EDataType { eDataType_Asn1 , eDataType_Snp , eDataType_Vcf }

Public Member Functions
	CGeneModelTrack (CSGFeatureDS ds, CRenderingContext r_cntx)

virtual	~CGeneModelTrack ()

void	SetAnnot (const string &annot)

void	SetFilter (const string &filter)

void	OnToggleContent (int id)

CLayoutTrack public methods.
virtual const CTrackTypeInfo &	GetTypeInfo () const override

virtual string	GetFullTitle () const override
	get a more meaningful title. More...

CSeqGlyph public methods
virtual void	GetHTMLActiveAreas (TAreaVector *p_areas) const override
	Get html active areas. More...

CDataTrack public methods
Method for getting data source.
virtual CRef< CSGGenBankDS >	GetDataSource () override
	CGeneModelTrack inline methods. More...

virtual CConstRef< CSGGenBankDS >	GetDataSource () const override

IAsn1Generator interface implementation
void	GenerateAsn1 (objects::CSeq_entry &seq_entry, TSeqRange range) override

virtual bool	BypassStage1 () override

virtual bool	CheckRange (TSeqRange range, string &, size_t &) override

IFeatureTrackBase interface implementation
virtual string	GetAnnot () const override

virtual void	GetFeatSubtypes (set< objects::CSeqFeatData::ESubtype > &subtypes) const override

Public Member Functions inherited from CDataTrack
	CDataTrack (CRenderingContext *r_cntx)

virtual	~CDataTrack ()

virtual void	DeleteAllJobs ()

virtual bool	AllJobsFinished () const

void	OnAJNotification (CEvent *evt)
	event handlers for job notification event. More...

void	OnAJProgress (CEvent *evt)

void	SetVisRange (const TSeqRange &range)

virtual void	Update (bool layout_only)
	Update content and layout including the bounding box. More...

Public Member Functions inherited from CGlyphContainer
	CGlyphContainer (CRenderingContext *r_cntx)

virtual	~CGlyphContainer ()

void	Add (CSeqGlyph *obj)
	Append a layout object to the end. More...

void	SetObjects (const CLayoutGroup::TObjectList &objs)

virtual void	SetComments (const string &comment_str)
	set comments. More...

virtual void	SetHighlights (const string &hl_str)
	set a list of 'object' need to be highlighted. More...

void	SetCommentGlyphs (const CSeqGlyph::TObjects &objs, CRef< CCommentConfig > config)

void	ResetCommentGlyph ()

void	SetLabelGlyphs (const CSeqGlyph::TObjects &objs, CRef< CCommentConfig > config)

void	ResetLabelGlyph ()

const THighlights &	GetHighlights () const

const TKeyHighlights &	GetHighlightsByKey () const

CLayoutGroup &	SetGroup ()

const CLayoutGroup &	GetGroup () const

CLayoutGroup::TObjectList &	SetChildren ()

const CLayoutGroup::TObjectList &	GetChildren () const

bool	Empty () const

void	SetLayoutPolicy (ILayoutPolicy *policy)
	Set policy on how to deploy the layout of its children. More...

virtual CRef< CSeqGlyph >	HitTest (const TModelPoint &p)
	Hit testing. More...

virtual bool	HitTestHor (TSeqPos x, const CObject *obj)

virtual bool	Intersects (const TModelRect &rect, TConstObjects &objs) const
	Intersect testing. More...

virtual bool	Accept (IGlyphVisitor *visitor)
	Interface for accepting an IGlyphVisitor. More...

Public Member Functions inherited from CLayoutTrack
	CLayoutTrack (CRenderingContext *r_cntx)

virtual	~CLayoutTrack ()

void	LoadProfile (const string &profile_str)
	set track profile and load settings. More...

void	SaveProfile ()

void	SetProfile (const string &preset_style)
	CLayoutTrack inline method implmentation. More...

const string &	GetProfile () const

string	GetTitle () const
	get the track title. More...

const TTrackErrorStatus &	GetErrorStatus () const

void	SetErrorStatus (const TTrackErrorStatus &ErrorStatus)

bool	isInErrorStatus () const

bool	isRmtBased () const

bool	isRemotePath () const

virtual CHTMLActiveArea *	InitHTMLActiveArea (TAreaVector *p_areas) const
	Initialize the HTML active area for a track. More...

void	MouseOut ()

bool	OnMotion (const TModelPoint &pt)

bool	GetShowTitle () const

void	SetShowTitle (bool flag)

void	SetConfig (CRef< CSeqGraphicConfig > conf)

int	GetIndent () const

void	SetIndent (int indent)

void	SetMsg (const string &msg)

void	SetParentTrack (CLayoutTrack *parent)

CLayoutTrack *	GetParentTrack ()

const CLayoutTrack *	GetParentTrack () const

bool	IsOn () const

bool	IsExpanded () const

bool	IsMovable () const

bool	IsCollapsible () const

void	SetShow (bool shown)
	set the flag only. More...

void	SetExpanded (bool f)

void	SetShowFrame (bool show)

void	MoveTo (TModelUnit y)

void	SetTrackAttr (TTrackAttrFlags flags)

void	SetTitle (const string &label, const string &default_title=NcbiEmptyString)

void	SetIsBlast (bool isBlast)

void	SetHost (ILayoutTrackHost *host)

void	SetOrder (int order)

int	GetOrder () const

void	SetId (const string &id)

const string &	GetId () const

void	CloseMe ()
	close this track. More...

void	ShowMe ()

void	Expand (bool expand)
	Collapse or expand the track. More...

virtual bool	OnLeftDown (const TModelPoint &p)

virtual bool	OnLeftDblClick (const TModelPoint &p)

virtual bool	NeedTooltip (const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const
	Check if need to show tooltip. More...

virtual void	GetTooltip (const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const
	Get the tooltip if available. More...

Public Member Functions inherited from CSeqGlyph
	CSeqGlyph ()

virtual	~CSeqGlyph ()

virtual TSeqRange	GetRange (void) const
	get the total range of this object. More...

virtual bool	SetSelected (bool flag)
	Select or deselect this glyph. More...

virtual void	SetHideLabel (bool)
	Force to hide label. More...

virtual bool	HasSideLabel () const
	Query if there is label and label is on the side. More...

virtual bool	IsClickable () const
	Query if this glyph is clickable. More...

virtual bool	LessBySeqPos (const CSeqGlyph &obj) const
	compare this object to another based on glyph sequence position. More...

bool	LessByPos (const CSeqGlyph &obj) const
	compare this object to another, based on glyph geometry position. More...

bool	LessBySeqSize (const CSeqGlyph &obj) const
	compare this object to another, based on sequence size. More...

bool	LessBySize (const CSeqGlyph &obj) const
	compare this object to another, based on geometry size. More...

void	Draw () const
	render the layout. More...

TModelRect	GetModelRect () const
	get the bounding box. More...

bool	IsIn (const TModelPoint &p) const
	Hit test for points in PARENT COORD. More...

bool	IsIn (TModelUnit x, TModelUnit y) const

bool	IsInHor (TModelUnit x) const

void	SetRender (IGlyphRenderer *renderer)
	set customized renderer for this layout objects. More...

void	SetRenderingContext (CRenderingContext *context)
	Set the rendering context. More...

const CRenderingContext *	GetRenderingContext () const
	Get the rendering context. More...

void	SetTearline (size_t Tearline)
	tearline factor – used to limit a list of glyphs More...

size_t	GetTearline () const

void	SetTearlineText (const string &sTearlineText)
	tearline text – if set, is appended to the glyph name (does not naffect processing otherwise) More...

string	GetTearlineText () const

void	SetRowNum (size_t cur_row)

size_t	GetRowNum () const

void	SetVisible (size_t v)

size_t	GetVisible () const

int	GetLevel () const

void	SetLevel (int Level)

virtual string	GetPName () const
	persistent name of the glyph should not depend on the instance of the glyph, but should uniquely reflect its contents so two glyphs having the same contents will have the same name currently used to track isDrawn() status for expandable glyphs default implementation returns an empty string implementations exist for CFeatGlyph (name of the contained feature) and CLayoutGroup (concatenation of all sorted children names) More...

float	GetFadeFactor () const

virtual bool	OnLeftUp (const TModelPoint &)

virtual bool	OnContextMenu (wxContextMenuEvent &event)

bool	IsSelected () const

bool	IsHighlighted () const

CRgbaColor *	GetHighlightsColor () const

virtual TModelUnit	GetHeight () const

virtual TModelUnit	GetWidth () const

virtual TModelUnit	GetLeft () const

virtual TModelUnit	GetTop () const

virtual TModelUnit	GetRight () const

virtual TModelUnit	GetBottom () const

const TModelPoint &	GetPos () const

void	GetPosInWorld (TModelPoint &pos) const
	Get top left position in world coordinate. More...

const CSeqGlyph *	GetParent (void) const

CSeqGlyph *	GetParent (void)

ENeighbours	GetNeighbours () const

void	SetHighlighted (bool flag)

void	SetHighlightsColor (const CRgbaColor &hl_color)

void	SetHighlightsColor (const string &hl_color_str)

virtual void	SetWidth (TModelUnit w)

virtual void	SetHeight (TModelUnit h)

virtual void	SetLeft (TModelUnit l)

virtual void	SetTop (TModelUnit b)

virtual void	SetPos (const TModelPoint &upper_left)

void	SetParent (CSeqGlyph *p)

CSeqGlyph *	SetParent (void)

void	SetNeighbours (ENeighbours neighbours)

Public Member Functions inherited from CObjectEx
	CObjectEx (void)

virtual	~CObjectEx (void)

Public Member Functions inherited from CObject
	CObject (void)
	Constructor. More...

	CObject (const CObject &src)
	Copy constructor. More...

virtual	~CObject (void)
	Destructor. More...

CObject &	operator= (const CObject &src) THROWS_NONE
	Assignment operator. More...

bool	CanBeDeleted (void) const THROWS_NONE
	Check if object can be deleted. More...

bool	IsAllocatedInPool (void) const THROWS_NONE
	Check if object is allocated in memory pool (not system heap) More...

bool	Referenced (void) const THROWS_NONE
	Check if object is referenced. More...

bool	ReferencedOnlyOnce (void) const THROWS_NONE
	Check if object is referenced only once. More...

void	AddReference (void) const
	Add reference to object. More...

void	RemoveReference (void) const
	Remove reference to object. More...

void	ReleaseReference (void) const
	Remove reference without deleting object. More...

virtual void	DoNotDeleteThisObject (void)
	Mark this object as not allocated in heap – do not delete this object. More...

virtual void	DoDeleteThisObject (void)
	Mark this object as allocated in heap – object can be deleted. More...

void *	operator new (size_t size)
	Define new operator for memory allocation. More...

void *	operator new[] (size_t size)
	Define new[] operator for 'array' memory allocation. More...

void	operator delete (void *ptr)
	Define delete operator for memory deallocation. More...

void	operator delete[] (void *ptr)
	Define delete[] operator for memory deallocation. More...

void *	operator new (size_t size, void *place)
	Define new operator. More...

void	operator delete (void ptr, void place)
	Define delete operator. More...

void *	operator new (size_t size, CObjectMemoryPool *place)
	Define new operator using memory pool. More...

void	operator delete (void ptr, CObjectMemoryPool place)
	Define delete operator. More...

virtual void	DebugDump (CDebugDumpContext ddc, unsigned int depth) const
	Define method for dumping debug information. More...

Public Member Functions inherited from CDebugDumpable
	CDebugDumpable (void)

virtual	~CDebugDumpable (void)

void	DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const

void	DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const

void	DumpToConsole (void) const

Public Member Functions inherited from CWeakObject
	CWeakObject (void)

virtual	~CWeakObject (void)

CPtrToObjectProxy *	GetPtrProxy (void) const
	Get pointer to proxy object containing pointer to this object. More...

Public Member Functions inherited from CEventHandler
	CEventHandler ()
	CEventHandler. More...

virtual	~CEventHandler ()

virtual void	AddListener (CEventHandler *listener, int pool_name=ePool_Default)
	Add a listener. More...

virtual void	RemoveListener (CEventHandler *listener)
	Remove a listener. More...

virtual void	RemoveAllListeners (void)

virtual bool	HasListener (CEventHandler *listener, int pool_name=ePool_Default) const
	returns "true" if the given listener belongs to the specified pool More...

virtual const TListeners *	GetListeners (int pool_name=ePool_Default) const
	returns a set of listeners fro the specified pool More...

virtual bool	OnEvent (CEvent *evt)
	Processes en event. Returns "true" if event has been processed. More...

virtual bool	Dispatch (CEvent *evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default)
	Dispatches an event to the listeners (but does not handle it). More...

virtual bool	Send (CEvent *evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default)
	Sends an event synchronously. More...

virtual bool	Send (CEvent *evt, int pool_name)

void	Post (CRef< CEvent > evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default)
	Handles an event asynchronously (process and/or dispatch). More...

Public Member Functions inherited from IAsn1Generator
virtual	~IAsn1Generator ()

virtual EDataType	GetDataType () const

Public Member Functions inherited from IFeatureTrackBase
virtual	~IFeatureTrackBase ()

virtual bool	IsVarTrack () const

virtual bool	IsSnpTrack () const

Protected Member Functions
CLayoutTrack virtual methods overloading.
virtual void	x_LoadSettings (const string &preset_style, const TKeyValuePairs &settings) override
	load the track settings. More...

virtual void	x_SaveSettings (const string &preset_style) override
	save part of settings to a profile string. More...

virtual void	x_OnIconClicked (TIconID id) override
	Mouse left-click event handler on an icon. More...

CDataTrack virtual methods overloading
virtual void	x_UpdateData () override
	update track content. More...

virtual void	x_OnJobCompleted (CAppJobNotification &notify) override

virtual void	x_UpdateBoundingBox () override
	Update the bounding box assuming children's sizes are fixed if any. More...

virtual void	x_OnAllJobsFinished () override

Protected Member Functions inherited from CDataTrack
	DECLARE_EVENT_MAP ()

virtual void	x_Expand (bool expand)
	Collapse or expand the track. More...

void	x_UpdateLayout ()

const TSeqRange &	x_GetVisRange () const

virtual bool	x_IsJobNeeded (CAppJobDispatcher::TJobID id) const

virtual void	x_OnJobFailed (CAppJobNotification &notify)

Protected Member Functions inherited from CGlyphContainer
virtual string	x_GetHistMsg () const
	Histogram configuration (linear, log, etc) is also on the title bar but multiple track types can have histograms, so we use virtual functinons. More...

virtual void	x_RenderContent () const
	The content rendering must be implemented in the derived layout tracks. More...

virtual bool	x_Empty () const

virtual void	x_ClearContent ()

Protected Member Functions inherited from CLayoutTrack
virtual void	x_Draw () const
	The default renderer for this layout object. More...

virtual bool	x_ShowTitle () const
	Need to preserve title space and show the title. More...

TModelUnit	x_GetTBHeight () const
	Get title bar height including margin. More...

CConstRef< CSeqGraphicConfig >	x_GetGlobalConfig () const
	Method for getting global configuration from rendering context. More...

void	x_OnLayoutChanged ()
	update the layout. More...

virtual void	x_GetTBRect (TModelRect &rc) const
	Get title bar rectange exclude top margin. More...

virtual void	x_RenderProgressBar () const
	Method for rendering the job loading or layout generating progress. More...

virtual void	x_RenderTitleBar () const
	Method for rendering the track title bar. More...

virtual void	x_RenderIcon (TIconID id, bool highlighted, bool lite_version=false) const
	Render track icons. More...

virtual int	x_GetIconState (TIconID id) const
	Get current status for a given button. More...

void	x_RegisterIcon (const SIconInfo &icon)
	register track icons. More...

void	x_DeregisterIcon (TIconID id)
	deregister an icon if already registered. More...

void	x_EnableIcon (TIconID id, bool enabled)
	Enable/disable an existing icon. More...

void	x_ShowIcon (TIconID id, bool shown)
	Show/hide an existing icon. More...

int	x_HitIconTest (const TModelPoint &p) const
	hit any icon?. More...

bool	x_HitTitleBar (const TModelPoint &p) const
	hit the title bar?. More...

void	x_SetStatus (const string &msg, int progress)

void	x_SetStartStatus ()

void	x_SetFinishStatus ()

bool	x_IsNCBITrack () const
	Indicates whether the track is NCBI track. More...

Protected Member Functions inherited from CSeqGlyph
virtual void	x_DrawHighlight () const

void	x_DrawInnerLabelColumns (TModelUnit base, const string &label, const CRgbaColor &color, const CGlTextureFont &font, bool side_label_visible) const

void	x_DrawInnerLabels (TModelUnit base, const string &label, const CRgbaColor &color, const CGlTextureFont &font, bool side_label_visible, bool inside_only, vector< TModelRange > labels_ranges=nullptr, TSeqRange interval=nullptr, bool XOR_mode=false) const

void	x_DrawTruncatedLabel (const string &label, const CGlTextureFont &font, TModelUnit width, TModelUnit x, TModelUnit y, vector< TModelRange > *labels_ranges=nullptr) const

void	x_DrawException () const
	Draw a shading background to indicate exception. More...

void	x_Parent2Local (TModelPoint &pnt) const
	Transform the coordiante from parent coord. to local coord. More...

void	x_Parent2Local (TModelUnit &, TModelUnit &y) const
	Transform the coordiante from parent coord. to local coord. More...

void	x_Parent2Local (TModelRect &rect) const
	Transform the coordiante from parent coord. to local coord. More...

void	x_World2Local (TModelPoint &p) const
	Transform the coordiante from world coord. to local coord. More...

void	x_World2Local (TModelUnit &x, TModelUnit &y) const

void	x_Local2World (TModelPoint &p) const
	Transform the coordiantes from local coord. to world coord. More...

void	x_Local2World (TModelUnit &x, TModelUnit &y) const

void	x_InitHTMLActiveArea (CHTMLActiveArea &area) const
	initialize the basic information for a given active area. More...

bool	x_Visible_V () const
	is this glyph visible in vertical direction? More...

template<class T >
bool	x_IntersectVisible (const CRange< T > &SeqRange, T &from, T &to) const

Protected Member Functions inherited from CObject
virtual void	DeleteThis (void)
	Virtual method "deleting" this object. More...

Protected Member Functions inherited from CWeakObject
void	CleanWeakRefs (void) const
	Method cleaning all CWeakRefs referencing at this moment to the object After calling to this method all existing CWeakRefs referencing to the object will return NULL, so it effectively will be equal to deleting the object. More...

Protected Member Functions inherited from CEventHandler
virtual const SEvtMap *	GetEventMap () const

void	x_DeclareDead ()
	Removes itself unavailable for async event delivery. More...

void	x_AddListenerToPool (CEventHandler *listener, int pool_name)

Private Types
typedef map< objects::CSeqFeatData::ESubtype, CConstRef< CFeatureParams > >	TFeatConfigMap

Private Member Functions
void	x_AdjustSelector ()

void	x_OnContentIconClicked ()

void	x_OnLayoutIconClicked ()

void	x_AddLandMarkFeaturesLayout (CSGJobResult &result)

void	x_AddMainFeaturesLayout (const CSGJobResult &result)

void	x_AddCDSProduct_FeatsLayout (CSGJobResult &result)

void	x_AddFeatProductLayout (CBatchJobResult &results)

bool	x_NeedHighlight (const CFeatGlyph &feat_glyph) const

bool	x_InitFeature_Recursive (CLayoutGroup::TObjectList &objs, TFeatConfigMap &feat_confs, const CFeatGlyph *parent_gene, TFeatBatchJobRequests &requests, bool compact_mode)

void	x_SaveConfiguration () const
	save all track settings to the configuration file. More...

prohibited copy constructor and assignment operator.
	CGeneModelTrack (const CGeneModelTrack &)

CGeneModelTrack &	operator= (const CGeneModelTrack &)

Private Attributes
wxEvtHandler *	m_ContentHandler
	wx-related event handler. More...

CRef< CGeneModelConfig >	m_Conf

string	m_AnnotName

string	m_RealAnnot

CRef< CSGFeatureDS >	m_DS

objects::SAnnotSelector	m_LandMarkFeatSel

objects::SAnnotSelector	m_MainSel

objects::SAnnotSelector	m_cdsFeatSel

CRef< CCompactLayout >	m_Compact

bool	m_AnnotNameUpdated
	flag for indicating if we have used a more meaningful annotation name. More...

set< objects::CSeqFeatData::ESubtype >	m_subtypes
	Text inidcating that some transcripts were filtered out. More...

string	m_FilterDescr

Static Private Attributes
static CTrackTypeInfo	m_TypeInfo

Friends
class	CGeneModelFactory

Additional Inherited Members
Static Public Member Functions inherited from CLayoutTrack
static void	RegisterIconImage (const TIconAlias &key, const string &img_file)
	register the image for an icon. More...

Static Public Member Functions inherited from CSeqGlyph
static bool	PointInRect (const TModelPoint &p, const TModelRect &rc)

static bool	PointInRect (TModelUnit x, TModelUnit y, const TModelRect &rc)

Static Public Member Functions inherited from CObject
static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (void)
	Define method to throw null pointer exception. More...

static NCBI_XNCBI_EXPORT void	ThrowNullPointerException (const type_info &type)

static EAllocFillMode	GetAllocFillMode (void)

static void	SetAllocFillMode (EAllocFillMode mode)

static void	SetAllocFillMode (const string &value)
	Set mode from configuration parameter value. More...

Static Public Member Functions inherited from CDebugDumpable
static void	EnableDebugDump (bool on)

Static Public Member Functions inherited from CEventHandler
static bool	HandlePostRequest ()

static void	ClearPostQueue ()
	erases all events from the queue More...

static void	DestroyPostQueue ()

Static Public Member Functions inherited from IAsn1Generator
static string	DataTypeToString (EDataType data_type)

Static Public Attributes inherited from CObject
static const TCount	eCounterBitsCanBeDeleted = 1 << 0
	Define possible object states. More...

static const TCount	eCounterBitsInPlainHeap = 1 << 1
	Heap signature was found. More...

static const TCount	eCounterBitsPlaceMask
	Mask for 'in heap' state flags. More...

static const int	eCounterStep = 1 << 2
	Skip over the "in heap" bits. More...

static const TCount	eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2)
	Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...

static const TCount	eCounterStateMask
	Valid object, and object in heap. More...

Protected Types inherited from CLayoutTrack
enum	EIconID { eIcon_Close = 0 , eIcon_Expand , eIcon_Content , eIcon_Layout , eIcon_Settings , eIcon_Help , eIcon_MaxTrackIconID = 100 }
	Icon id used in layout track. More...

typedef int	TIconID
	use int as TIconID instead of EIconID. More...

typedef string	TIconAlias
	the icon alias used as a key More...

typedef vector< SIconInfo >	TIcons

Static Protected Member Functions inherited from CLayoutTrack
static void	RegisterCommonIconImages ()
	register images for the common icons. More...

static bool	InitIconTextures ()
	initialize OpenGL ttexture objects for icons. More...

Protected Attributes inherited from CGlyphContainer
CLayoutGroup	m_Group

CRef< CSimpleLayout >	m_Simple

CRef< CInlineLayout >	m_Inline

CRef< CLayeredLayout >	m_Layered

Protected Attributes inherited from CLayoutTrack
int	m_Order
	track order number More...

string	m_Id
	track identifier More...

bool	m_On
	is this track shown More...

bool	m_ShowFrame
	need to draw frame, not title More...

bool	m_Expanded
	is this track in expanded state More...

TIcons	m_Icons
	registered icon info More...

int	m_HighlightedIcon
	the highlighted icon index More...

TTrackAttrFlags	m_Attrs
	various track attributes More...

ILayoutTrackHost *	m_LTHost
	Top level host owning the tracks. More...

string	m_Title
	track title More...

bool	m_isBlast {false}
	true if the track is known to be generated and uploaded by BLAST More...

string	m_DefaultTitle
	Default track title. More...

string	m_Msg
	special message need to show on title bar More...

int	m_Progress
	any job progress index (0 - 100) More...

int	m_IndentLevel
	track hierachy indentation level. More...

TTrackErrorStatus	m_ErrorStatus

CRef< CSeqGraphicConfig >	m_gConfig
	global configuration. More...

string	m_Profile = "Default"
	track setting profile More...

Protected Attributes inherited from CSeqGlyph
CSeqGlyph *	m_Parent
	parent/child relationships for this feature More...

CRenderingContext *	m_Context
	the rendering context More...

unique_ptr< CRgbaColor >	m_HighlightsColor
	Highlight color. More...

ENeighbours	m_Neighbours
	Indicates whether the glyph has neighbours. More...

Protected Attributes inherited from CEventHandler
TPools	m_Pools

Static Protected Attributes inherited from CEventHandler
static const SEvtMap	sm_EvtMap

Detailed Description

CGeneModelTrack –.

Definition at line 58 of file gene_model_track.hpp.

Member Typedef Documentation

◆ TFeatConfigMap

typedef map< objects::CSeqFeatData::ESubtype, CConstRef<CFeatureParams> > CGeneModelTrack::TFeatConfigMap

private

Definition at line 159 of file gene_model_track.hpp.

Member Enumeration Documentation

◆ EJobType

enum CGeneModelTrack::EJobType

Enumerator
eJob_LandMarkGenes
eJob_MainFeats
eJob_GeneProducts
eJob_CDSProduct_Feats
eJob_FeatProducts

Definition at line 64 of file gene_model_track.hpp.

Constructor & Destructor Documentation

◆ CGeneModelTrack() [1/2]

CGeneModelTrack::CGeneModelTrack	(	CSGFeatureDS *	ds,
		CRenderingContext *	r_cntx
	)

Definition at line 130 of file gene_model_track.cpp.

References CSeqFeatData_Base::e_Gene, CSeqFeatData::eSubtype_any, CSeqFeatData::eSubtype_gene, CSeqFeatData::eSubtype_prot, CSeqFeatData::eSubtype_repeat_region, CSeqFeatData::eSubtype_repeat_unit, CSeqFeatData::eSubtype_source, CSeqFeatData::eSubtype_variation, CSeqUtils::GetAnnotSelector(), CSeqFeatData::GetFeatList(), and ITERATE.

◆ ~CGeneModelTrack()

CGeneModelTrack::~CGeneModelTrack ( )

virtual

Definition at line 169 of file gene_model_track.cpp.

References CSGGenBankDS::AllJobsFinished(), CSGGenBankDS::DeleteAllJobs(), and m_DS.

◆ CGeneModelTrack() [2/2]

CGeneModelTrack::CGeneModelTrack ( const CGeneModelTrack & )

private

Member Function Documentation

◆ BypassStage1()

virtual bool CGeneModelTrack::BypassStage1 ( )

inlineoverridevirtual

Implements IAsn1Generator.

Definition at line 105 of file gene_model_track.hpp.

◆ CheckRange()

virtual bool CGeneModelTrack::CheckRange	(	TSeqRange	range,
		string &	,
		size_t &
	)

inlineoverridevirtual

Implements IAsn1Generator.

Definition at line 110 of file gene_model_track.hpp.

◆ GenerateAsn1()

void CGeneModelTrack::GenerateAsn1	(	objects::CSeq_entry &	seq_entry,
		TSeqRange	range
	)

overridevirtual

Implements IAsn1Generator.

Definition at line 356 of file gene_model_track.cpp.

References CSerialObject::Assign(), CFeatureGenerator::CreateMicroIntrons(), ftable, CSGGenBankDS::GetBioseqHandle(), CMappedFeat::GetMappedFeature(), Handle, m_AnnotName, m_DS, m_MainSel, compile_time_bits::range(), CSeq_entry::SetAnnot(), CSeq_annot_Base::SetData(), and CSeqUtils::SetResolveDepth().

◆ GetAnnot()

virtual string CGeneModelTrack::GetAnnot ( void ) const

inlineoverridevirtual

Implements IFeatureTrackBase.

Definition at line 115 of file gene_model_track.hpp.

References m_RealAnnot.

◆ GetDataSource() [1/2]

CConstRef< CSGGenBankDS > CGeneModelTrack::GetDataSource ( void ) const

inlineoverridevirtual

Implements CDataTrack.

Definition at line 279 of file gene_model_track.hpp.

References CRef< C, Locker >::GetPointer(), and m_DS.

◆ GetDataSource() [2/2]

CRef< CSGGenBankDS > CGeneModelTrack::GetDataSource ( void )

inlineoverridevirtual

CGeneModelTrack inline methods.

Implements CDataTrack.

Definition at line 273 of file gene_model_track.hpp.

References CRef< C, Locker >::GetPointer(), and m_DS.

◆ GetFeatSubtypes()

void CGeneModelTrack::GetFeatSubtypes ( set< objects::CSeqFeatData::ESubtype > & subtypes ) const

overridevirtual

Implements IFeatureTrackBase.

Definition at line 224 of file gene_model_track.cpp.

References set< Key, Compare >::insert(), and m_subtypes.

◆ GetFullTitle()

string CGeneModelTrack::GetFullTitle ( ) const

overridevirtual

get a more meaningful title.

This allows a concrete track to compose a more meaningful title in a more complex way.

Reimplemented from CLayoutTrack.

Definition at line 183 of file gene_model_track.cpp.

References CLayoutTrack::GetTitle(), CSeqUtils::IsUnnamed(), and m_AnnotName.

◆ GetHTMLActiveAreas()

void CGeneModelTrack::GetHTMLActiveAreas ( TAreaVector * ) const

overridevirtual

Get html active areas.

This function is for CGI mode only. By default, it does nothing.

Reimplemented from CGlyphContainer.

Definition at line 1129 of file gene_model_track.cpp.

References CHTMLActiveArea::fComment, CHTMLActiveArea::fDrawBackground, CHTMLActiveArea::fNoHighlight, CHTMLActiveArea::fNoSelection, CHTMLActiveArea::fTooltipEmbedded, CGlyphContainer::GetHTMLActiveAreas(), CLayoutTrack::GetId(), CHTMLActiveArea::m_Bounds, m_FilterDescr, CHTMLActiveArea::m_Flags, CHTMLActiveArea::m_ID, CHTMLActiveArea::m_ParentId, CHTMLActiveArea::m_PositiveStrand, CHTMLActiveArea::m_SeqRange, CRange_Base::SetFrom(), CGlRect< T >::SetLeft(), CGlRect< T >::SetRight(), CRange_Base::SetTo(), CGlRect< T >::SetTop(), CGlRect< T >::Top(), CLayoutTrack::x_GetTBHeight(), and CSeqGlyph::x_InitHTMLActiveArea().

◆ GetTypeInfo()

const CTrackTypeInfo & CGeneModelTrack::GetTypeInfo ( void ) const

overridevirtual

Reimplemented from CGlyphContainer.

Definition at line 177 of file gene_model_track.cpp.

References m_TypeInfo.

◆ OnToggleContent()

void CGeneModelTrack::OnToggleContent ( int id )

Definition at line 273 of file gene_model_track.cpp.

References CGeneModelConfig::m_CCDSOnly, m_Conf, CGeneModelConfig::m_HideModels, CGeneModelConfig::m_HideNonCoding, CGeneModelConfig::m_SelectOnly, CGeneModelConfig::m_ShowAaRuler, CGeneModelConfig::m_ShowCDSProductFeats, CGeneModelConfig::m_ShowCDSs, CGeneModelConfig::m_ShowExons, CGeneModelConfig::m_ShowGenes, CGeneModelConfig::m_ShowHistogram, CGeneModelConfig::m_ShowNtRuler, CGeneModelConfig::m_ShowRNAs, CGeneModelConfig::m_ShowVDJCs, x_AdjustSelector(), and x_UpdateData().

Referenced by CGeneContentEvtHandler::x_OnToggleContent().

◆ operator=()

CGeneModelTrack& CGeneModelTrack::operator= ( const CGeneModelTrack & )

private

◆ SetAnnot()

void CGeneModelTrack::SetAnnot ( const string & annot )

Definition at line 198 of file gene_model_track.cpp.

References CSeqUtils::eAnnot_Unnamed, m_AnnotName, m_LandMarkFeatSel, m_MainSel, m_RealAnnot, CSeqUtils::NameTypeStrToValue(), and NStr::StartsWith().

◆ SetFilter()

void CGeneModelTrack::SetFilter ( const string & filter )

inline

Definition at line 285 of file gene_model_track.hpp.

References m_DS, and CSGFeatureDS::SetFilter().

◆ x_AddCDSProduct_FeatsLayout()

void CGeneModelTrack::x_AddCDSProduct_FeatsLayout ( CSGJobResult & result )

private

◆ x_AddFeatProductLayout()

void CGeneModelTrack::x_AddFeatProductLayout ( CBatchJobResult & results )

private

◆ x_AddLandMarkFeaturesLayout()

void CGeneModelTrack::x_AddLandMarkFeaturesLayout ( CSGJobResult & result )

private

Definition at line 597 of file gene_model_track.cpp.

References CGlyphContainer::Add(), CGlyphContainer::CGlyphContainer(), CLayoutGroup::Clear(), ctll::empty(), CSeqFeatData::eSubtype_gene, CLayoutTrack::fFullTrack, CLayoutTrack::fNavigable, CLayoutTrack::fShowAlways, CLayoutTrack::fShowTitle, CSeqUtils::GetAnnotName(), CSeqGraphicConfig::GetFeatParams(), CGlyphContainer::GetHighlights(), CGlyphContainer::GetHighlightsByKey(), CFeatGlyph::GetMappedFeature(), CSeqGraphicConfig::GetShowComments(), CSeqGraphicConfig::GetShowSimpleComments(), CSeqGlyph::IsHighlighted(), kMaxGenesOverviewRows, m_AnnotName, m_AnnotNameUpdated, CLayoutTrack::m_Attrs, CCommentConfig::m_Centered, m_Conf, CSeqGlyph::m_Context, CLayoutTrack::m_gConfig, CSeqGlyph::m_HighlightsColor, CLayoutTrack::m_IndentLevel, CCommentConfig::m_LabelColor, CGeneModelConfig::m_LandmarkFeatLimit, CGlyphContainer::m_Layered, CCommentConfig::m_LineColor, CLayoutTrack::m_LTHost, CGeneModelConfig::m_ShowLabel, CGlyphContainer::m_Simple, NON_CONST_ITERATE, result, CRgbaColor::Set(), CFeatGlyph::SetConfig(), CHistogramGlyph::SetConfig(), CLayoutTrack::SetConfig(), CHistogramGlyph::SetDialogHost(), CGlyphContainer::SetGroup(), CFeatGlyph::SetHideLabel(), CSeqGlyph::SetHighlighted(), CSeqGlyph::SetHighlightsColor(), CLayoutTrack::SetIndent(), CGlyphContainer::SetLabelGlyphs(), CGlyphContainer::SetLayoutPolicy(), CLayeredLayout::SetMaxRow(), CLayoutTrack::SetMsg(), CGlyphContainer::SetObjects(), CLayoutTrack::SetTitle(), CLayoutTrack::SetTrackAttr(), NStr::SizetToString(), CLayoutTrack::x_GetGlobalConfig(), x_NeedHighlight(), and CDataTrack::x_UpdateLayout().

Referenced by x_OnJobCompleted().

◆ x_AddMainFeaturesLayout()

void CGeneModelTrack::x_AddMainFeaturesLayout ( const CSGJobResult & result )

private

Definition at line 753 of file gene_model_track.cpp.

References CLayoutGroup::Clear(), eJob_FeatProducts, map_checker< Container >::empty(), set< Key, Compare >::empty(), CSeqFeatData::eSubtype_cdregion, CSeqFeatData::eSubtype_exon, CSeqFeatData::eSubtype_gene, CSeqFeatData::eSubtype_mat_peptide_aa, CSeqFeatData::eSubtype_mRNA, CLayoutTrack::fNavigable, CGlyphContainer::GetChildren(), CSeqGraphicConfig::GetFeatParams(), CGlyphContainer::GetHighlights(), CGlyphContainer::GetHighlightsByKey(), CRenderingContext::GetScale(), CRenderingContext::GetVisSeqRange(), kCompactThreshold, kMaxCompactRows, CSGFeatureDS::LoadFeatures(), CLayoutTrack::m_Attrs, m_Compact, m_Conf, CSeqGlyph::m_Context, m_DS, m_FilterDescr, CLayoutTrack::m_gConfig, CGeneModelConfig::m_HighlightMode, CGlyphContainer::m_Layered, NULL, CGlyphContainer::ResetLabelGlyph(), result, CGlyphContainer::SetChildren(), CGlyphContainer::SetGroup(), CGlyphContainer::SetLayoutPolicy(), CLayeredLayout::SetMaxRow(), CLayoutTrack::SetMsg(), CGlyphContainer::SetObjects(), ncbi::grid::netcache::search::fields::size, NStr::SizetToString(), x_InitFeature_Recursive(), and CDataTrack::x_UpdateLayout().

Referenced by x_OnJobCompleted().

◆ x_AdjustSelector()

void CGeneModelTrack::x_AdjustSelector ( )

private

◆ x_InitFeature_Recursive()

bool CGeneModelTrack::x_InitFeature_Recursive	(	CLayoutGroup::TObjectList &	objs,
		TFeatConfigMap &	feat_confs,
		const CFeatGlyph *	parent_gene,
		TFeatBatchJobRequests &	requests,
		bool	compact_mode
	)

private

Definition at line 967 of file gene_model_track.cpp.

Referenced by x_AddMainFeaturesLayout().

◆ x_LoadSettings()

void CGeneModelTrack::x_LoadSettings	(	const string &	preset_style,
		const TKeyValuePairs &	settings
	)

overrideprotectedvirtual

load the track settings.

By default, it does nothing.

Parameters

preset_style	a preset setting style name
settings	a list of track-specific setting in a form of key-value pair.

Reimplemented from CLayoutTrack.

Definition at line 413 of file gene_model_track.cpp.

References CSeqGraphicConfig::GetObjectSpace(), CLayoutTrack::GetProfile(), kBaseKey, CGeneModelConfig::LoadSettings(), m_Compact, m_Conf, CLayoutTrack::m_gConfig, CGlyphContainer::m_Layered, CRef< C, Locker >::Reset(), CLayoutTrack::SetProfile(), CCompactLayout::SetVertSpace(), CLayeredLayout::SetVertSpace(), CGeneModelConfig::UpdateSettings(), x_AdjustSelector(), and CLayoutTrack::x_GetGlobalConfig().

◆ x_NeedHighlight()

bool CGeneModelTrack::x_NeedHighlight ( const CFeatGlyph & feat_glyph ) const

private

◆ x_OnAllJobsFinished()

void CGeneModelTrack::x_OnAllJobsFinished ( )

overrideprotectedvirtual

Reimplemented from CDataTrack.

Definition at line 1167 of file gene_model_track.cpp.

References ctll::empty(), CGlyphContainer::GetChildren(), m_FilterDescr, CLayoutTrack::m_Msg, CDataTrack::x_OnAllJobsFinished(), and CLayoutTrack::x_SetStatus().

◆ x_OnContentIconClicked()

void CGeneModelTrack::x_OnContentIconClicked ( )

private

Definition at line 458 of file gene_model_track.cpp.

References kContentBaseID, ILayoutTrackHost::LTH_PopEventHandler(), ILayoutTrackHost::LTH_PopupMenu(), ILayoutTrackHost::LTH_PushEventHandler(), m_Conf, m_ContentHandler, CLayoutTrack::m_LTHost, CGeneModelConfig::m_ShowCDSProductFeats, CGeneModelConfig::m_ShowCDSs, CGeneModelConfig::m_ShowExons, CGeneModelConfig::m_ShowGenes, CGeneModelConfig::m_ShowHistogram, CGeneModelConfig::m_ShowRNAs, CGeneModelConfig::m_ShowVDJCs, and wxT.

Referenced by x_OnIconClicked().

◆ x_OnIconClicked()

void CGeneModelTrack::x_OnIconClicked ( TIconID id )

overrideprotectedvirtual

Mouse left-click event handler on an icon.

In this class, only clicks on close and expand icons are handled. Any other icons are very likely track-specific, so they need to be handled in the derived tracks.

Reimplemented from CLayoutTrack.

Definition at line 442 of file gene_model_track.cpp.

References CLayoutTrack::eIcon_Content, CLayoutTrack::eIcon_Layout, x_OnContentIconClicked(), CLayoutTrack::x_OnIconClicked(), and x_OnLayoutIconClicked().

◆ x_OnJobCompleted()

void CGeneModelTrack::x_OnJobCompleted ( CAppJobNotification & notify )

overrideprotectedvirtual

Implements CDataTrack.

Definition at line 383 of file gene_model_track.cpp.

References CSGGenBankDS::ClearJobID(), eJob_FeatProducts, eJob_LandMarkGenes, eJob_MainFeats, Error(), CAppJobNotification::GetJobID(), CAppJobNotification::GetResult(), LOG_POST, m_DS, result, switch(), x_AddFeatProductLayout(), x_AddLandMarkFeaturesLayout(), and x_AddMainFeaturesLayout().

◆ x_OnLayoutIconClicked()

void CGeneModelTrack::x_OnLayoutIconClicked ( )

private

Definition at line 542 of file gene_model_track.cpp.

References CGeneModelConfig::eMerge_All, CGeneModelConfig::eMerge_No, CGeneModelConfig::eMerge_OneLine, CGeneModelConfig::eMerge_Pairs, ITERATE, ILayoutTrackHost::LTH_PopupMenu(), m_Conf, CLayoutTrack::m_LTHost, CGeneModelConfig::m_MergeStyle, UseDefaultMarginWidth(), wxT, and x_UpdateData().

Referenced by x_OnIconClicked().

◆ x_SaveConfiguration()

void CGeneModelTrack::x_SaveConfiguration ( ) const

private

save all track settings to the configuration file.

this is not used currently.

Definition at line 1114 of file gene_model_track.cpp.

References CLayoutTrack::GetProfile(), kBaseKey, m_Conf, CGeneModelConfig::SaveSettings(), and CLayoutTrack::x_GetGlobalConfig().

◆ x_SaveSettings()

void CGeneModelTrack::x_SaveSettings ( const string & preset_style )

overrideprotectedvirtual

save part of settings to a profile string.

Only the potential settings changed by users will be saved.

Reimplemented from CLayoutTrack.

Definition at line 436 of file gene_model_track.cpp.

References m_Conf, CGeneModelConfig::SaveSettingsAsString(), and CLayoutTrack::SetProfile().

◆ x_UpdateBoundingBox()

void CGeneModelTrack::x_UpdateBoundingBox ( )

overrideprotectedvirtual

Update the bounding box assuming children's sizes are fixed if any.

Reimplemented from CGlyphContainer.

Definition at line 1154 of file gene_model_track.cpp.

References GetGl(), CSeqGlyph::GetHeight(), CSeqGlyph::GetTop(), IRender::IsPrinterFriendly(), m_FilterDescr, CGlyphContainer::m_Group, CSeqGlyph::SetHeight(), CSeqGlyph::SetTop(), and CGlyphContainer::x_UpdateBoundingBox().

◆ x_UpdateData()

void CGeneModelTrack::x_UpdateData ( )

overrideprotectedvirtual

update track content.

Implements CDataTrack.

Definition at line 339 of file gene_model_track.cpp.

References CSGGenBankDS::DeleteAllJobs(), eJob_LandMarkGenes, eJob_MainFeats, ctll::empty(), COpenRange< Position >::Empty(), CGlyphContainer::GetHighlights(), CGlyphContainer::GetHighlightsByKey(), CRenderingContext::GetScale(), CRenderingContext::GetVisSeqRange(), CRenderingContext::IsOverviewMode(), CSGFeatureDS::LoadGeneModelFeatures(), m_Compact, m_Conf, CSeqGlyph::m_Context, m_DS, m_LandMarkFeatSel, m_MainSel, max(), CRenderingContext::ScreenToSeq(), CCompactLayout::SetMinDist(), CDataTrack::x_GetVisRange(), and CLayoutTrack::x_SetStartStatus().

Referenced by OnToggleContent(), and x_OnLayoutIconClicked().

Friends And Related Function Documentation

◆ CGeneModelFactory

friend class CGeneModelFactory

friend

Definition at line 61 of file gene_model_track.hpp.

Member Data Documentation

◆ m_AnnotName

string CGeneModelTrack::m_AnnotName

private

Definition at line 179 of file gene_model_track.hpp.

Referenced by GenerateAsn1(), GetFullTitle(), SetAnnot(), x_AddLandMarkFeaturesLayout(), and x_InitFeature_Recursive().

◆ m_AnnotNameUpdated

bool CGeneModelTrack::m_AnnotNameUpdated

private

flag for indicating if we have used a more meaningful annotation name.

This needs to be done only once.

Definition at line 191 of file gene_model_track.hpp.

Referenced by x_AddLandMarkFeaturesLayout(), and x_InitFeature_Recursive().

◆ m_cdsFeatSel

objects::SAnnotSelector CGeneModelTrack::m_cdsFeatSel

private

Definition at line 185 of file gene_model_track.hpp.

Referenced by x_InitFeature_Recursive().

◆ m_Compact

CRef<CCompactLayout> CGeneModelTrack::m_Compact

private

Definition at line 187 of file gene_model_track.hpp.

Referenced by x_AddMainFeaturesLayout(), x_LoadSettings(), and x_UpdateData().

◆ m_Conf

CRef<CGeneModelConfig> CGeneModelTrack::m_Conf

private

Definition at line 178 of file gene_model_track.hpp.

Referenced by OnToggleContent(), x_AddFeatProductLayout(), x_AddLandMarkFeaturesLayout(), x_AddMainFeaturesLayout(), x_AdjustSelector(), x_InitFeature_Recursive(), x_LoadSettings(), x_OnContentIconClicked(), x_OnLayoutIconClicked(), x_SaveConfiguration(), x_SaveSettings(), and x_UpdateData().

◆ m_ContentHandler

wxEvtHandler* CGeneModelTrack::m_ContentHandler

private

wx-related event handler.

Definition at line 176 of file gene_model_track.hpp.

Referenced by x_OnContentIconClicked().

◆ m_DS

CRef<CSGFeatureDS> CGeneModelTrack::m_DS

private

Definition at line 182 of file gene_model_track.hpp.

Referenced by GenerateAsn1(), GetDataSource(), SetFilter(), x_AddCDSProduct_FeatsLayout(), x_AddFeatProductLayout(), x_AddMainFeaturesLayout(), x_InitFeature_Recursive(), x_OnJobCompleted(), x_UpdateData(), and ~CGeneModelTrack().

◆ m_FilterDescr

string CGeneModelTrack::m_FilterDescr

private

Definition at line 197 of file gene_model_track.hpp.

Referenced by GetHTMLActiveAreas(), x_AddMainFeaturesLayout(), x_OnAllJobsFinished(), and x_UpdateBoundingBox().

◆ m_LandMarkFeatSel

objects::SAnnotSelector CGeneModelTrack::m_LandMarkFeatSel

private

Definition at line 183 of file gene_model_track.hpp.

Referenced by SetAnnot(), and x_UpdateData().

◆ m_MainSel

objects::SAnnotSelector CGeneModelTrack::m_MainSel

private

Definition at line 184 of file gene_model_track.hpp.

Referenced by GenerateAsn1(), SetAnnot(), x_AdjustSelector(), and x_UpdateData().

◆ m_RealAnnot

string CGeneModelTrack::m_RealAnnot

private

Definition at line 180 of file gene_model_track.hpp.

Referenced by GetAnnot(), and SetAnnot().

◆ m_subtypes

set<objects::CSeqFeatData::ESubtype> CGeneModelTrack::m_subtypes

private

Text inidcating that some transcripts were filtered out.

Definition at line 194 of file gene_model_track.hpp.

Referenced by GetFeatSubtypes(), and x_AdjustSelector().

◆ m_TypeInfo

CTrackTypeInfo CGeneModelTrack::m_TypeInfo

staticprivate

Definition at line 193 of file gene_model_track.hpp.

Referenced by CGeneModelFactory::GetExtensionIdentifier(), CGeneModelFactory::GetExtensionLabel(), CGeneModelFactory::GetTypeInfo(), and GetTypeInfo().

The documentation for this class was generated from the following files:

include/gui/widgets/seq_graphic/gene_model_track.hpp
src/gui/widgets/seq_graphic/gene_model_track.cpp

Public Types

Public Member Functions

Protected Member Functions

Private Types

Private Member Functions

Private Attributes

Static Private Attributes

Friends

Additional Inherited Members

Detailed Description

Member Typedef Documentation

◆ TFeatConfigMap

Member Enumeration Documentation

◆ EJobType

Constructor & Destructor Documentation

◆ CGeneModelTrack() [1/2]

◆ ~CGeneModelTrack()

◆ CGeneModelTrack() [2/2]

Member Function Documentation

◆ BypassStage1()

◆ CheckRange()

◆ GenerateAsn1()

◆ GetAnnot()

◆ GetDataSource() [1/2]

◆ GetDataSource() [2/2]

◆ GetFeatSubtypes()

◆ GetFullTitle()

◆ GetHTMLActiveAreas()

◆ GetTypeInfo()

◆ OnToggleContent()

◆ operator=()

◆ SetAnnot()

◆ SetFilter()

◆ x_AddCDSProduct_FeatsLayout()

◆ x_AddFeatProductLayout()

◆ x_AddLandMarkFeaturesLayout()

◆ x_AddMainFeaturesLayout()

◆ x_AdjustSelector()

◆ x_InitFeature_Recursive()

◆ x_LoadSettings()

◆ x_NeedHighlight()

◆ x_OnAllJobsFinished()

◆ x_OnContentIconClicked()

◆ x_OnIconClicked()

◆ x_OnJobCompleted()

◆ x_OnLayoutIconClicked()

◆ x_SaveConfiguration()

◆ x_SaveSettings()

◆ x_UpdateBoundingBox()

◆ x_UpdateData()

Friends And Related Function Documentation

◆ CGeneModelFactory

Member Data Documentation

◆ m_AnnotName

◆ m_AnnotNameUpdated

◆ m_cdsFeatSel

◆ m_Compact

◆ m_Conf

◆ m_ContentHandler

◆ m_DS

◆ m_FilterDescr

◆ m_LandMarkFeatSel

◆ m_MainSel

◆ m_RealAnnot

◆ m_subtypes

◆ m_TypeInfo