GEO DataSets

(Submitter supplied) Excisable Genomic Islands (EGIs) are horizontally acquired genetic elements that harbor an array of genes with diverse functions. ROD21 is an EGI found integrated in the chromosome of Salmonella enterica serovar Enteritidis (Salmonella ser. Enteritidis). While this island is known to be involved in the capacity of Salmonella ser. Enteritidis to cross the epithelial barrier and colonize sterile organs, the role for most of ROD21 genes remains unknown, and thus identification of their function is fundamental to understand the impact of this EGI on the bacterium pathogenicity. more...

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL33504

6 Samples

Download data: XLSX

(Submitter supplied) To elucidated the global profile of genes regulated by PhoPQ under quinolones/cephalosporins stresses in S. Enteritidis. We then performed gene expression profiling analysis using data obtained from RNA-seq of 4 group bacterial samples.

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27516

12 Samples

Download data: XLSX

(Submitter supplied) Purpose:To investigate the effect of small RNA RyhB-1and RyhB-2 deletion of Salmonella enteritidis on genes expression of genome under simulated intestinal conditions Methods:S. Enteritidis wild type (WT) strain 50336 and mutants △ryhB-1, △ryhB-2, and △ryhB-1/ryhB-2 were grown overnight in 50 mL of the LB medium with 160 rpm shaking at 37°C under aerobic condition, washed thrice, and re-suspended with iron-limited and nutrient-limited medium. more...

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17074

12 Samples

Download data: TXT

(Submitter supplied) Transcriptional profiling of Salmonella Enteritidis to egg-white filtrate exposure at 45°C for 45 min

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by array

Platform:

GPL22813

1 Sample

Download data: GPR

(Submitter supplied) We report our results of RNA-seq analysis on the wild type Salmonella enterica serovar Enteritidis with and without H2O2 treatment

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27516

6 Samples

Download data: TXT

(Submitter supplied) Previously we reported that Salmonella can proliferate by deriving energy from two metabolites that naturally occur in the host as gut microbial metabolic byproducts, namely, tyramine (TYR, an aromatic amine) and D-glucuronic acid (DGA, a hexuronic acid). Salmonella Pathogenicity Island 13 (SPI-13) plays a critical role in the ability of Salmonella to derive energy from TYR and DGA, however the catabolism of these two micronutrients in Salmonella are poorly defined. more...

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27516

9 Samples

Download data: XLS

(Submitter supplied) We report our results of RNA-seq analysis on the wild type Salmonella Enteritidis and its yccT (i.e., yccT encodes STY1099 protein) mutant with and without H2O2 treatment

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27516

6 Samples

Download data: TXT

(Submitter supplied) We report our results of RNA-seq analysis on Salmonella Enteritidis biofilms and planktonic cells of the wild type and its cpxR mutant

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL27515

12 Samples

Download data: TXT

(Submitter supplied) Purpose: To elucidated key metabolic pathways important for S. Enteritidis survival in egg white. Methods: RNA sample of Mid-log phase bacteria cultures that grown in M9FeS medium were taken as 0h sample, and bacteria incubated with egg white for 6h 12h and 24h were taken as 6,12,24h RNA sample respectively. Three biological replicates were carried out per sample. RNA sample was sequenced with Illumina HiSeq 2000 System. more...

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17074

12 Samples

Download data: XLSX

(Submitter supplied) We report the use of RNA-Seq technique to identify common highly expressed genes in pathogenic poultry-associated field strains of S. Enteritidis grown in LB-salt broth (300mM NaCl) and low-phosphate/low -magnesium/low-pH LPM broth at avian body temperature (42°C).

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17074

6 Samples

Download data: TXT

(Submitter supplied) Transcriptional profiles of mid-exponentially growing Salmonella enterica sv Enteritidis PT8 cultures in response to exposure to trans-cinnamaldehyde (0.01%; 0.75mM) or eugenol (0.04%; 2.46mM)

Organism:

Salmonella enterica; Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by array

Platform:

GPL11279

11 Samples

Download data: TXT

(Submitter supplied) Transcriptional profiling of Salmonella Enteritidis to egg-white exposure at 45°C for 7 min, 25 min and 45 min

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by array

Platform:

GPL22813

3 Samples

Download data: GPR, XLS

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis; Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91

Type:

Expression profiling by array; Genome binding/occupancy profiling by array

Platforms:

GPL19472 GPL13609

101 Samples

Download data: GPR, TXT

(Submitter supplied) S. Typhimurium SL1344 parental strain and isogenic ΔrpoS, ΔrelAΔspoT and ΔrelAΔspoTΔrpoS strains were grown to OD600=1.0, OD600=2.3, OD600=3.0 and OD600=4.2 in Luria-Bertani medium.

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis; Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91

Type:

Expression profiling by array

Platform:

GPL13609

35 Samples

Download data: GPR

(Submitter supplied) S. Typhimurium SL1344 parental strain and isogenic ΔrpoS, ΔdksA and ΔrelAΔspoT, ΔrelAΔspoTΔrpoS and ΔrelAΔspoTΔdksA strains were grown to OD600=1.0, OD600=2.3, OD600=3.0 and OD600=4.2 in Luria-Bertani medium.

Organism:

Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Enteritidis; Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91

Type:

Expression profiling by array

Platform:

GPL13609

30 Samples

Download data: TXT

(Submitter supplied) S. Typhimurium 112910a parental strain and an isogenic ΔscsA strain were grown to stationary phase in SPI2 inducing minimal medium (MM5.8 - Erikkson et al., 2006 Inf & Imm., 74:1243) with or without supplementation with 1µM cortisol

Organism:

Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Salmonella enterica subsp. enterica serovar Typhimurium str. DT104; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Enteritidis; Salmonella enterica subsp. enterica serovar Typhimurium

Type:

Expression profiling by array

Platform:

GPL13609

12 Samples

Download data: GPR

(Submitter supplied) We report the use of RNA-Seq technique to characterize differences in the global transcritome between multiple genetically similar but phenotypically diverse poultry-associated field strains of S. Enteritidis grown in laboratory media at avian body temperature (42°C).

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17074

6 Samples

Download data: TXT

(Submitter supplied) The screening of a cDNA derived expression library of Salmonella Enteritidis 125109 expressed in E. coli using a fusion construct and specific HaloTag interaction to a modified surface is shown. Thus, 1536 different clones were screened including positive (fimA) and negative (argC, gapA) reference proteins. The goal of the screening was to identify potential novel immunogenic proteins from S. Enteritidis by selecting clones showing a high signal intensity in comparison to the known antigens used as positve markers. more...

Organism:

Escherichia coli; Salmonella enterica subsp. enterica serovar Enteritidis

Type:

Protein profiling by protein array

Platform:

GPL17538

12 Samples

Download data: TXT

(Submitter supplied) Transcriptional profiling of Salmonella Typhimurium SL1344 wild type grown to OD600=1 in LB alone or in LB supplemented with 2mM Indole, or with 2mM indole for 15 min (called shock). The goal is to determine Salmonella response to indole at different time points.

Organism:

Salmonella enterica subsp. enterica serovar Enteritidis str. P125109; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

Type:

Expression profiling by array

Platform:

GPL13452

14 Samples

Download data: GPR

(Submitter supplied) Transcriptional profiling of Salmonella Typhimurium SL1344 wild type and deletion of the sdiA regulator-encoding gene grown to OD600=1 in LB alone or in LB supplemented with 2mM indole. The goal is to determine Salmonella response to indole and to define the SdiA-regulated genes in these conditions.

Organism:

Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Salmonella enterica subsp. enterica serovar Typhimurium str. LT2; Salmonella enterica subsp. enterica serovar Enteritidis str. P125109; Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S

Type:

Expression profiling by array

Platform:

GPL13452

16 Samples

Download data: GPR