Similar studies for GEO DataSets (Select 200056997) - GEO DataSets

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Items: 20

Select item 2000569971.

Transcriptional profile Lactobacillus plantarum WCFS1: 15 mM gallic acid (GA) treated cells

(Submitter supplied) Whole genome transcriptional profiling was used to characterize the response of Lactobacillus plantarum WCFS1 human isolate during challenge with gallic acid (GA). Twelve independent experiments were performed and mixed at random in groups of four for total of three RNA samples. The transcriptional profile reveals a massive induction of genes involved in transport and decarboxilation of gallic acid.

Organism:: Lactiplantibacillus plantarum; Lactiplantibacillus plantarum WCFS1

Type:: Expression profiling by array

Platform:: GPL15934
3 Samples

Download data: TXT

Series

Accession:: GSE56997

ID:: 200056997

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000637282.

Transcriptional profile Lactobacillus plantarum WCFS1 : 1.5mM gallic acid (GA) treated cells

(Submitter supplied) Whole genome transcriptional profiling was used to characterize the response of Lactobacillus plantarum WCFS1 human isolate during challenge with 1.5 mM gallic acid (GA). Twelve independent experiments were performed and mixed at random in groups of four for total of three RNA samples. The transcriptional profile reveals a massive induction of genes involved in transport and decarboxilation of gallic acid.

Organism:: Lactiplantibacillus plantarum; Lactiplantibacillus plantarum WCFS1

Type:: Expression profiling by array

Platform:: GPL15934
3 Samples

Download data: TXT

Series

Accession:: GSE63728

ID:: 200063728

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000401263.

Transcriptional profile Lactobacillus plantarum WCFS1 : p-coumaric acid (p-CA) treated cells

(Submitter supplied) Whole genome transcriptional profiling was used to characterize the response of Lactobacillus plantarum WCFS1 human isolate during challenge with p-coumaric acid (p-CA). Twelve independent experiments were performed and mixed at random in groups of four for total of three RNA samples. The transcriptional profile reveals a massive induction of genes involved in stress resistance and detoxification-related functions and a global shutdown of growth-associated processes.

Organism:: Lactiplantibacillus plantarum; Lactiplantibacillus plantarum WCFS1

Type:: Expression profiling by array

Platform:: GPL15934
3 Samples

Download data: TXT

Series

Accession:: GSE40126

ID:: 200040126

Select item 2000897854.

Transcriptional profile Lactobacillus plantarum WCFS1 : Resveratrol treated cells

(Submitter supplied) Whole genome transcriptional profiling was used to characterize the response of Lactobacillus plantarum WCFS1 human isolate during challenge with resveratrol. Twelve independent experiments were performed and mixed at random in groups of four for total of three RNA samples. The transcriptional profile reveals a large reshape of nitrogen metabolism whic affects, among others, the pyridine and purine metabolisms as well as the metabolism of aminoacids related to thiol-specific oxidative stress response in this microorganism. more...

Organism:: Lactiplantibacillus plantarum

Type:: Expression profiling by array

Platform:: GPL22663
3 Samples

Download data: TXT

Series

Accession:: GSE89785

ID:: 200089785

Select item 2000178475.

Ethanol stress response in Lactobacillus plantarum WCFS1

(Submitter supplied) Transcriptome profiles of control Lactobacillus plantarum WCFS1 cells were compared with 8% ethanol adapted cells and with 10 min or 30 min 8% ethanol shocked cells.

Organism:: Lactiplantibacillus plantarum WCFS1

Type:: Expression profiling by array

Platform:: GPL4318
12 Samples

Download data: TXT

Series

Accession:: GSE17847

ID:: 200017847

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000058826.

Identification of prebiotic fructooligosaccharide metabolism in Lactobacillus plantarum WCFS1 through microarrays

(Submitter supplied) Short-chain fructooligosaccharides (scFOS) and other prebiotics are used to selectively stimulate the growth and activity of lactobacilli and bifidobacteria in the colon. However, there is little information on the mechanisms whereby prebiotics exert their specific effects upon such microorganisms. To study the genomic basis of scFOS metabolism in Lactobacillus plantarum WCFS1, two-colour microarrays were used to screen for differentially expressed genes when grown on scFOS as compared to glucose (not a prebiotic). more...

Organism:: Lactiplantibacillus plantarum WCFS1

Type:: Expression profiling by array

Platform:: GPL4318
6 Samples

Download data: IMAGENE

Series

Accession:: GSE5882

ID:: 200005882

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000907147.

Transcriptional profile Lactobacillus plantarum WCFS1 : Hydroxytyrosol treated cells

(Submitter supplied) Whole genome transcriptional profiling was used to characterize the response of Lactobacillus plantarum WCFS1 human isolate during challenge with hydroxytyrosol. Twelve independent experiments were performed and mixed at random in groups of four for total of three RNA samples. Whole genome transcriptional profiling was used to characterize the response of Lactobacillus plantarum WCFS1 human isolate during challenge with hydroxytyrosol. more...

Organism:: Lactiplantibacillus plantarum

Type:: Expression profiling by array

Platform:: GPL22663
3 Samples

Download data: TXT

Series

Accession:: GSE90714

ID:: 200090714

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000113838.

Lifestyle of lactobacillus plantarum in the mouse cecum

(Submitter supplied) Lactobacillus plantarum is a common inhabitant of mammalian gastrointestinal tracts and specific strains belonging to this species are marketed as probiotics intended to confer beneficial health effects. To assist in determining the physiological status and host-microbe interactions of L. plantarum in the digestive tract we assessed changes in the transcriptome of L. plantarum WCFS1 during colonization of the cecum of germ-free mice. more...

Organism:: Lactiplantibacillus plantarum WCFS1

Type:: Expression profiling by array

Platform:: GPL4318
18 Samples

Download data: IMAGENE

Series

Accession:: GSE11383

ID:: 200011383

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000312539.

The CtsR and HrcA regulon of Lactobacillus plantarum WCFS1 at normal and elevated temperature Nov 01, 2011 approved

(Submitter supplied) Transcriptome profiles of control Lactobacillus plantarum WCFS1 cells were compared with ctsR, hrcA, and ctsR-hrcA deletion mutants grown in MRS media at 28 and 40 degrees Celcius.

Organism:: Lactiplantibacillus plantarum WCFS1; Lactiplantibacillus plantarum

Type:: Expression profiling by array

Platform:: GPL13984
24 Samples

Download data: TXT

Series

Accession:: GSE31253

ID:: 200031253

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20002051510.

WT vs KO of lp_2991 comparison

(Submitter supplied) A mutant of L. plantarumWCFS1 (deletion of lp_2991) was compared with the wildtype grown in standard MRS broth. Cells were sampled at OD1 for mRNA extraction.

Organism:: Lactiplantibacillus plantarum WCFS1

Type:: Expression profiling by array

Platform:: GPL9359
2 Samples

Download data: TXT

Series

Accession:: GSE20515

ID:: 200020515

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20006818811.

From transcriptomics to phenomics to reveal adaptation response of Lactobacillus plantarum C2 in plant substrates

(Submitter supplied) The aim of the study was to determine biological relevance of differentially expressed genes in Lactobacillus plantarum C2 during fermentation of plant substrates. Whole-transcriptome analysis based on customized microarray profiles has been used to determine altered transcription patterns in L. plantarum C2.

Organism:: Lactiplantibacillus plantarum

Type:: Expression profiling by array

Platform:: GPL20099
8 Samples

Download data: TXT

Series

Accession:: GSE68188

ID:: 200068188

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20011544812.

How Lactobacillus plantarum Shapes its Transcriptome in Response to Contrasting Habitats

(Submitter supplied) Triplets of Lactobacullus plantarum strains were isolated from nine contrasting habitats. Without any passage through other culture media, isolation and cultivation were on model media that strictly reproduced the chemical and physical conditions and stressors of the habitats of origin. Here, we demonstrated how L. plantarum regulates and shapes its transcriptome in response to contrasting habitats. more...

Organism:: Lactiplantibacillus plantarum

Type:: Expression profiling by high throughput sequencing

Platform:: GPL25156
36 Samples

Download data: TXT

Series

Accession:: GSE115448

ID:: 200115448

PubMed Similar studies SRA Run Selector

Select item 20000257713.

Transcriptional analysis of carbohydrate utilization by Lactobacillus acidophilus using whole-genome microarrays

(Submitter supplied) L. acidophilus cells, transferred at least five times in modified MRS medium (Barrangou et al, 2003) containing the carbohydrate of interest, were grown to an OD600 of 0.6, harvested and processed for microarray experiments (Azcarate-Peril et al, 2005). Keywords: other

Organism:: Lactobacillus acidophilus

Type:: Expression profiling by array

Platform:: GPL1401
28 Samples

Download data

Series

Accession:: GSE2577

ID:: 200002577

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003469014.

Characterization of the the L. plantarum capsular polysaccharide clusters

(Submitter supplied) The bacterial cell envelope is a complex, multilayered structure that is not only essential to maintain cellular integrity, but also facilitates vital bacterial processes such as adaption, colonization and adhesion. Cell envelopes comprise a wide range of molecules, such as proteins and capsular polysaccharide (CPS), which collectively decorate the bacterial cell in a species- and strain specific manner. more...

Organism:: Lactiplantibacillus plantarum

Type:: Expression profiling by array

Platform:: GPL13984
10 Samples

Download data: TXT

Series

Accession:: GSE34690

ID:: 200034690

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20008953415.

Transcriptional profile Lactobacillus plantarum WCFS1 : olive oil (OO) treated cells

(Submitter supplied) Whole genome transcriptional profiling was used to characterize the response of Lactobacillus plantarum WCFS1 human isolate during challenge with olive oil (OO). Twelve independent experiments were performed and mixed at random in groups of four for total of three RNA samples. The transcriptional profile reveals the downregulation of processes associated with rapid growth and the induction of stress-related pathways indicating the involvement of the stringent response. more...

Organism:: Lactiplantibacillus plantarum; Lactiplantibacillus plantarum WCFS1

Type:: Expression profiling by array

Platform:: GPL15934
3 Samples

Download data: TXT

Series

Accession:: GSE89534

ID:: 200089534

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20001843516.

Analysis of the role of CggR in Lactobacillus plantarum NC8 and WCFS1 by transcriptome analysis

(Submitter supplied) The level of the Central glycolytic gene regulator (CggR) was engineered in Lactobacillus plantarum NC8 and WCFS1 by over-expression and in-frame mutation of the cggR gene in order to evaluate its regulatory role on the glycolytic gap operon and the glyco

Organism:: Lactiplantibacillus plantarum WCFS1; Lactiplantibacillus plantarum

Type:: Expression profiling by array

Platform:: GPL4318
28 Samples

Download data: TXT

Series

Accession:: GSE18435

ID:: 200018435

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003575417.

Comparative analysis of bacterial transcriptome using DNA microarray and next generation sequencing technologies

(Submitter supplied) Validation of Lactobacillus plantarum WCFS1 transcriptome profile using RNA sequencing (direct cDNA sequencing and 3'-UTR sequencing) in comparison with DNA microarray as a reference platform.

Organism:: Lactiplantibacillus plantarum

Type:: Expression profiling by array

Platform:: GPL13984
4 Samples

Download data: TXT

Series

Accession:: GSE35754

ID:: 200035754

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20014383418.

Characterization of Lactobacillus plantarum gene expression in the acidic conditions

(Submitter supplied) Characterization of Lactobacillus plantarum gene expression in the acididic conditions such as kimchi fermentation

Organism:: Lactiplantibacillus plantarum

Type:: Expression profiling by high throughput sequencing

Platform:: GPL23496
6 Samples

Download data: XLSX

Series

Accession:: GSE143834

ID:: 200143834

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20003107619.

L. plantarum grown in a variety of different fermentation conditions

(Submitter supplied) Lactobacillus plantarum WCFS1 was differentially fermented in 29 different fermentations according to a factorial, combinatorial scheme that included variations in growth temperature (28 or 37C), NaCl concentration (0 or 0.3M), pH (5.2, 5.8, 6.4), as well as oxygen (N2 or air) and amino acid availability (1.1 or 2x concentration).