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Platform GPL1291 Query DataSets for GPL1291
Status Public on Jun 18, 2004
Title Hitachisoft AceGene Human Oligo Chip 30K 1 Chip Version
Technology type spotted oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Hitachisoft
Manufacture protocol see manufacturer's web site
 
Description AceGene Human Oligo Chip 30K 1 Chip Version
 
Web link http://hitachisoft.jp/dnasis/acegene/
Submission date Jun 16, 2004
Last update date Dec 15, 2010
Organization Hitachi Software Engineering Co., Ltd.
E-mail(s) dnachip@hitachisoft.jp
Phone +81-45-500-5111
Street address
City 1-1-43,Suehiro-cho,Tsurumi-ku,Yokohama
ZIP/Postal code 230-0045
Country Japan
 
Samples (1093) GSM169553, GSM169554, GSM169555, GSM169556, GSM169557, GSM169558 
Series (17)
GSE7073 Gene expression profiles of head and neck squamous cell carcinoma (HNSCC) cell lines
GSE7687 Methylation-silenced genes in colorectal cancer cell lines
GSE8124 Gene expression profiles of 25 normal human tissues

Data table header descriptions
ID
Description Description of the probe
CDS_ID Aceesion number of corresponding public database (In the case of GenBank and RefSeq, the position of the CDS within the record is shown after an underscore)
GB_ACC GenBank accession number
Entrez Gene ID Entrez Gene ID
Symbol Symbol of the gene derived from Entrez Gene ID
GeneName Gene Name derived from Entrez Gene ID
IPI ID IPI ID derived from Entrez Gene ID
GO Molecular Function GO Molecular Function derived from Entrez Gene ID
GO Biological Process GO Biological Process derived from Entrez Gene ID
GO Cellular Component GO Cellular Component derived from Entrez Gene ID
ORF open reading frame
SPOT_ID spot identifier

Data table
ID Description CDS_ID GB_ACC Entrez Gene ID Symbol GeneName IPI ID GO Molecular Function GO Biological Process GO Cellular Component ORF SPOT_ID
AGhsA010101 interferon, alpha 8; ifna8 NM_002170_1 NM_002170 3445 IFNA8 interferon, alpha 8 IPI00031075.1 hematopoietin/interferon-class (D200-domain) cytokine receptor binding defense response, response to virus extracellular region, extracellular space 3445
AGhsA010102 8-oxoguanine dna glycosylase, isoform 2c; ogg1 NM_016827_1 NM_016827 4968 OGG1 8-oxoguanine DNA glycosylase IPI00007312.1, IPI00025730.1, IPI00026574.1, IPI00220178.1, IPI00220179.1, IPI00220180.3, IPI00294126.2, IPI00303869.4, IPI00477364.2, IPI00657683.2, IPI00816589.1 damaged DNA binding, protein binding, oxidized purine base lesion DNA N-glycosylase activity, endonuclease activity, hydrolase activity, acting on glycosyl bonds, lyase activity base-excision repair, metabolic process cellular_component, mitochondrion, nucleoplasm, nucleus, intracellular 4968
AGhsA010103 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 4; kir2ds4 NM_012314_1 NM_012314 3803 KIR2DL2 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 2 IPI00019883.1, IPI00816129.1, IPI00844173.1, IPI00845456.1 receptor activity immune response integral to plasma membrane, integral to membrane, membrane 3803
AGhsA010104 fibroblast growth factor receptor 2, isoform 3 precursor; fgfr2 NM_022970_1 NM_022970 2263 FGFR2 fibroblast growth factor receptor 2 (bacteria-expressed kinase, keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome) IPI00010680.2, IPI00010777.3, IPI00216600.1, IPI00216602.2, IPI00216603.1, IPI00216604.1, IPI00216605.1, IPI00218416.1, IPI00218417.1, IPI00218418.1, IPI00218419.1, IPI00218420.1, IPI00218421.1, IPI00218422.1, IPI00218423.1, IPI00218424.2, IPI00218425.3, IPI00377178.2, IPI00383509.1, IPI00384713.3, IPI00386650.1, IPI00643986.1, IPI00647907.1, IPI00759837.2, IPI00798075.1 heparin binding, nucleotide binding, ATP binding, protein binding, transferase activity, fibroblast growth factor receptor activity, protein-tyrosine kinase activity, receptor activity cell growth, protein amino acid phosphorylation cell surface, integral to membrane, membrane 2263
AGhsA010105 g antigen 7; gage7 NM_021123_1 NM_021123 2543 GAGE1 G antigen 1 IPI00008809.1, IPI00011527.1, IPI00011530.2, IPI00016698.1, IPI00336105.6, IPI00470753.1, IPI00554527.1, IPI00641015.1, IPI00642235.1, IPI00645355.1, IPI00645726.1, IPI00647300.5, IPI00736423.1, IPI00738657.1, IPI00740461.1, IPI00747341.1, IPI00748837.1, IPI00783414.2 cellular defense response 2543
AGhsA010106 variable charge, x chromosome; vcx NM_013452_1 NM_013452 26609 VCX variable charge, X-linked IPI00301071.1, IPI00844158.1 chromatin binding, protein binding ribosome assembly, establishment and/or maintenance of chromatin architecture, spermatogenesis nucleolus, nucleus 26609
AGhsA010107 udp glycosyltransferase 2 family, polypeptide b28; ugt2b28 NM_053039_1 NM_053039 7363 UGT2B4 UDP glucuronosyltransferase 2 family, polypeptide B4 IPI00301491.1, IPI00789656.1, IPI00790652.1 glucuronosyltransferase activity estrogen catabolic process, xenobiotic metabolic process, metabolic process microsome, endoplasmic reticulum, integral to membrane, membrane 7363
AGhsA010108 eukaryotic translation elongation factor 1 alpha 1; eef1a1 NM_001402_1 NM_001402 1915 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 IPI00025447.8, IPI00382804.1, IPI00396485.3, IPI00431441.1, IPI00431701.2, IPI00641459.2, IPI00793363.1 translation elongation factor activity, nucleotide binding, GTP binding, protein binding, GTPase activity translational elongation, translation eukaryotic translation elongation factor 1 complex, cytoplasm 1915
AGhsA010109 deleted in azoospermia; daz NM_004081_1 NM_004081 1617 DAZ1 deleted in azoospermia 1 IPI00006498.1, IPI00006501.3, IPI00160336.4, IPI00334616.5, IPI00382559.1, IPI00401506.1, IPI00401964.1, IPI00470392.1, IPI00639994.1, IPI00644348.1, IPI00742060.1, IPI00744189.1, IPI00745549.2, IPI00749477.1, IPI00749494.1 RNA binding, translation activator activity, nucleotide binding, protein binding positive regulation of translational initiation, cell differentiation, multicellular organismal development, single fertilization, spermatogenesis nucleus 1617
AGhsA010110 amylo-1,6-glucosidase, 4-alpha-glucanotransferase isoform 1; agl NM_000644_1 NM_000644 178 AGL amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme, glycogen storage disease type III) IPI00219065.2, IPI00219066.4, IPI00328318.6, IPI00448008.1, IPI00514126.2, IPI00748506.1, IPI00807447.1 cation binding, 4-alpha-glucanotransferase activity, amylo-alpha-1,6-glucosidase activity, hydrolase activity, acting on glycosyl bonds, transferase activity, transferase activity, transferring glycosyl groups glycogen biosynthetic process, metabolic process, carbohydrate metabolic process isoamylase complex 178
AGhsA010111 rna binding motif, single stranded interacting protein 1, isoform e; rbms1 NM_016837_1 NM_016837 5937 RBMS1 RNA binding motif, single stranded interacting protein 1 IPI00033611.5, IPI00102991.1, IPI00237654.3, IPI00477694.1 DNA binding, double-stranded DNA binding, single-stranded DNA binding, RNA binding, nucleotide binding DNA replication, RNA processing cellular_component, nucleus 5937
AGhsA010112 vesicle-associated membrane protein 2 (synaptobrevin 2); vamp2 NM_014232_1 NM_014232 6844 VAMP2 vesicle-associated membrane protein 2 (synaptobrevin 2) IPI00465395.1, IPI00553138.3, IPI00790248.1, IPI00791199.1 phospholipid binding, SNARE binding, calmodulin binding regulation of exocytosis, synaptic vesicle exocytosis, calcium ion-dependent exocytosis, membrane fusion, vesicle-mediated transport synaptosome, synaptic vesicle membrane, zymogen granule membrane, secretory granule, integral to plasma membrane, membrane, synapse 6844
AGhsA010113 atp-binding cassette, sub-family c, member 1, isoform 4; abcc1 NM_019899_1 NM_019899 4363 ABCC1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 IPI00008338.1, IPI00008463.3, IPI00008465.3, IPI00014985.1, IPI00216262.1, IPI00216263.1, IPI00216264.1, IPI00216265.1, IPI00216266.1, IPI00216267.1, IPI00719178.1, IPI00843930.1 nucleotide binding, ATP binding, ATPase activity, coupled to transmembrane movement of substances, ATPase activity, transferase activity, kinase activity, transporter activity transport, response to drug membrane fraction, integral to plasma membrane, integral to membrane, membrane 4363
AGhsA010114 folate receptor 1 precursor; folr1 NM_016730_1 NM_016730 2348 FOLR1 folate receptor 1 (adult) IPI00441498.1 GPI anchor binding, folic acid binding, receptor activity receptor-mediated endocytosis, folic acid metabolic process, folic acid transport membrane fraction, integral to plasma membrane, membrane 2348
AGhsA010115 ribosomal protein l21 (gene or pseudogene); rpl21 NM_000982_1 NM_000982 6144 RPL21 ribosomal protein L21 IPI00247583.5, IPI00477343.1, IPI00651652.1, IPI00788010.1 RNA binding, structural constituent of ribosome translation cytosolic large ribosomal subunit (sensu Eukaryota), ribosome, intracellular 6144
AGhsA010116 small nuclear ribonucleoprotein polypeptide n; snrpn NM_022805_1 NM_022805 6638 SNRPN small nuclear ribonucleoprotein polypeptide N IPI00024246.2, IPI00028156.3, IPI00220360.2, IPI00785142.2, IPI00789767.1, IPI00790058.1, IPI00790449.1, IPI00790821.1, IPI00791297.1, IPI00791864.1, IPI00792137.1, IPI00792592.1, IPI00793157.1, IPI00794400.1, IPI00794440.1, IPI00795098.1, IPI00795861.1, IPI00796419.1, IPI00797016.1, IPI00797680.1, IPI00798321.1, IPI00845430.1 molecular_function, RNA binding, identical protein binding biological_process, RNA splicing, mRNA metabolic process cellular_component, small nuclear ribonucleoprotein complex, spliceosome, nucleus 6638
AGhsA010117 glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mRNA, complete cds; glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) X01677 X01677 2597 GAPDH glyceraldehyde-3-phosphate dehydrogenase IPI00219018.7, IPI00788737.1, IPI00789134.1, IPI00793922.1, IPI00794508.1, IPI00794605.1, IPI00794991.1, IPI00795257.1, IPI00795622.1, IPI00796111.1, IPI00796735.1, IPI00797221.1 NAD binding, protein binding, oxidoreductase activity, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity glycolysis, glucose metabolic process cytoplasm 2597
AGhsA010118 g antigen b1; gageb1 NM_003785_1 NM_003785 8712 PAGE1 P antigen family, member 1 (prostate associated) IPI00025748.2 cellular defense response 8712
AGhsA010119 heterogeneous nuclear ribonucleoprotein a1, isoform a; hnrpa1 NM_002136_1 NM_002136 144983 heterogeneous nuclear ribonucleoprotein A1-like IPI00414312.2 nucleic acid binding, nucleotide binding 144983
AGhsA010120 ribosomal protein l12; rpl12 NM_000976_1 NM_000976 6136 RPL12 ribosomal protein L12 IPI00024933.3, IPI00479158.5, IPI00816063.1 RNA binding, structural constituent of ribosome translation cytosolic large ribosomal subunit (sensu Eukaryota), ribosome, intracellular 6136

Total number of rows: 30336

Table truncated, full table size 7731 Kbytes.






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