CAutogeneratedCleanup Class Reference

Search Toolkit Book for CAutogeneratedCleanup

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#include "autogenerated_cleanup.hpp"
(Private to src/objtools/cleanup.)

Collaboration diagram for CAutogeneratedCleanup:

Public Member Functions
	CAutogeneratedCleanup (CScope &scope, CNewCleanup_imp &newCleanup)
void	BasicCleanupSeqEntry (CSeq_entry &arg0)
void	BasicCleanupSeqSubmit (CSeq_submit &arg0)
void	BasicCleanupSeqAnnot (CSeq_annot &arg0)
void	BasicCleanupBioseq (CBioseq &arg0)
void	BasicCleanupBioseqSet (CBioseq_set &arg0)
void	BasicCleanupSeqFeat (CSeq_feat &arg0_raw)
void	BasicCleanupSeqdesc (CSeqdesc &arg0)

Private Member Functions
void	x_BasicCleanupDate (CDate &date)
	This file was generated by application DATATOOL. More...
void	x_BasicCleanupSeqId (CSeq_id &id)
void	x_BasicCleanupSeqPoint (CSeq_point &seq_point)
void	x_BasicCleanupSeqBond (CSeq_bond &seq_bond)
void	x_BasicCleanupSeqLocEquiv (CSeq_loc_equiv &arg0)
void	x_BasicCleanupSeqInt (CSeq_interval &seq_int)
void	x_BasicCleanupSeqLocMix (CSeq_loc_mix &arg0)
template<typename Tcontainer_ncbi_cref_cseq_interval_ >
void	x_BasicCleanupSeqInts (Tcontainer_ncbi_cref_cseq_interval_ &arg0)
void	x_BasicCleanupPackedSeqInt (CPacked_seqint &arg0)
void	x_BasicCleanupPackedPoint (CPacked_seqpnt &arg0)
void	x_BasicCleanupSeqLoc (CSeq_loc &seq_loc)
template<typename TSeqLocContainer >
void	x_BasicCleanupSeqLocs (TSeqLocContainer &locs)
template<typename TSeqIdContainer >
void	x_BasicCleanupSeqIds (TSeqIdContainer &ids)
void	x_BasicCleanupDenseDiag (CDense_diag &arg0)
template<typename TDenseDiagContainer >
void	x_BasicCleanupDenseDiags (TDenseDiagContainer &dense_diags)
void	x_BasicCleanupDenseg (CDense_seg &denseg)
void	x_BasicCleanupSeqAlignSet (CSeq_align_set &arg0)
void	x_BasicCleanupPackedSeg (CPacked_seg &arg0)
void	x_BasicCleanupSparseAlign (CSparse_align &arg0)
void	x_BasicCleaupSparseSeg (CSparse_seg &arg0)
void	x_BasicCleanupSplicedExon (CSpliced_exon &arg0)
void	x_BasicCleanupSplicedSeg (CSpliced_seg &arg0)
void	x_BasicCleanupStdSeg (CStd_seg &arg0)
void	x_BasicCleanupAlignSegs (CSeq_align::C_Segs &arg0)
void	x_BasicCleanupSeqAlign (CSeq_align &arg0)
template<typename TSeqAlignContainer >
void	x_BasicCleanupSeqAligns (TSeqAlignContainer &aligns)
void	x_BasicCleanupAffilStd (CAffil::C_Std &arg0)
void	x_BasicCleanupAffil (CAffil &arg0)
void	x_BasicCleanupAuthor (CAuthor &arg0)
void	x_BasicCleanupAuthListNames (CAuth_list::C_Names &arg0)
void	x_BasicCleanupAuthList (CAuth_list &arg0, bool fix_initials=false)
void	x_BasicCleanupPubStatusDate (CPubStatusDate &arg0)
void	x_BasicCleanupPubStatusDateSet (CPubStatusDateSet &arg0)
void	x_BasicCleanupImprint (CImprint &arg0)
void	x_BasicCleanupCitBook (CCit_book &arg0)
void	x_BasicCleanupCitJournal (CCit_jour &arg0)
void	x_BasicCleanupMeeting (CMeeting &arg0)
void	x_BasicCleanupCitProc (CCit_proc &arg0)
void	x_BasicCleanupCitArtFrom (CCit_art::C_From &arg0)
void	x_BasicCleanupTitle (CTitle &arg0)
void	x_BasicCleanupCitArt (CCit_art &arg0)
void	x_BasicCleanupMedlineEntry (CMedline_entry &arg0)
void	x_BasicCleanupPatentPriority (CPatent_priority &arg0)
void	x_BasicCleanupCitPat (CCit_pat &arg0)
void	x_BasicCleanupCitGen (CCit_gen &arg0)
void	x_BasicCleanupCitLet (CCit_let &arg0)
void	x_BasicCleanupSeqFeat_cit_ETC (CPub_set &arg0)
void	x_BasicCleanupSeqFeat_comment (std::string &arg0)
template<typename Tcontainer_ncbi_cref_cdbtag_ >
void	x_BasicCleanupSeqFeat_dbxref_ETC (Tcontainer_ncbi_cref_cdbtag_ &arg0)
template<typename Tcontainer_std_string_ >
void	x_BasicCleanupOrgRefMod (Tcontainer_std_string_ &arg0)
template<typename Tcontainer_ncbi_cref_corgmod_ >
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org_org_orgname_orgname_mod_ETC (Tcontainer_ncbi_cref_corgmod_ &arg0)
void	x_BasicCleanupOrgNameName_hybrid_hybrid_E (COrgName &arg0)
template<typename Tcontainer_ncbi_cref_corgname_ >
void	x_BasicCleanupOrgNameName_hybrid_hybrid (Tcontainer_ncbi_cref_corgname_ &arg0)
void	x_BasicCleanupOrgNameName_hybrid (CMultiOrgName &arg0)
void	x_BasicCleanupOrgNameName (COrgName::C_Name &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org_org_orgname_E1798_ETC (COrgName &arg0)
void	x_BasicCleanupSeqFeatDataOrgName (COrgName &arg0, bool cleanup_parent_biosource)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_pcr_primers_ETC (CPCRReactionSet &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_E_source_source_ETC (CSubSource &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_E_source_ETC (CSubSource &arg0)
template<typename Tcontainer_ncbi_cref_csubsource_ >
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_subtype_ETC (Tcontainer_ncbi_cref_csubsource_ &arg0)
void	x_BasicCleanupSeqFeat_data_data_biosrc_biosrc (CBioSource &arg0)
void	x_BasicCleanupSeqFeat_data_data_biosrc (CBioSource &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_cdregion_code_break_E_E_ETC (CCode_break &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_cdregion_code_break_E_ETC (CCode_break &arg0)
template<typename Tcontainer_ncbi_cref_ccode_break_ >
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_cdregion_code_break_ETC (Tcontainer_ncbi_cref_ccode_break_ &arg0)
void	x_BasicCleanupSeqFeat_data_data_cdregion_cdregion (CCdregion &arg0)
void	x_BasicCleanupSeqFeat_data_data_cdregion (CCdregion &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_clone_seq_E_E_ETC (CClone_seq &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_clone_seq_E_ETC (CClone_seq &arg0)
template<typename Tcontainer_ncbi_cref_cclone_seq_ >
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_clone_seq_ETC (Tcontainer_ncbi_cref_cclone_seq_ &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_ETC (CClone_seq_set &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_ETC (CClone_ref &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_ETC (CClone_ref &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_desc_ETC (std::string &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_locus_ETC (std::string &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_syn_E_ETC (std::string &arg0)
template<typename Tcontainer_std_string_ >
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_syn_ETC (Tcontainer_std_string_ &arg0)
void	x_BasicCleanupGeneRef (CGene_ref &arg0, bool cleanup_parent_feat)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_imp_imp_ETC (CImp_feat &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_imp_ETC (CImp_feat &arg0)
void	x_BasicCleanupNumRef (CNum_ref &arg0)
void	x_BasicCleanupNumbering (CNumbering &arg0)
void	x_BasicCleanupOrgRef (COrg_ref &arg0, bool inBioSource)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_activity_E_ETC (std::string &arg0)
template<typename Tcontainer_std_string_ >
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_activity_ETC (Tcontainer_std_string_ &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_desc_ETC (std::string &arg0)
template<typename Tcontainer_std_string_ >
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_ec_ETC (Tcontainer_std_string_ &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_name_E_ETC (std::string &arg0)
template<typename Tcontainer_std_string_ >
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_name_ETC (Tcontainer_std_string_ &arg0)
void	x_BasicCleanupProtRef (CProt_ref &arg0, bool cleanup_parent_feat)
void	x_BasicCleanupPub (CPub &arg0, bool isSeqFeatCitPub=false)
void	x_BasicCleanupPubEquiv (CPub_equiv &arg0)
template<typename Tcontainer_ncbi_cref_cpub_ >
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_pub_pub_pub_pub1778_ETC (Tcontainer_ncbi_cref_cpub_ &arg0)
void	x_BasicCleanupSeqFeat_data_data_pub_ETC (CPubdesc &arg0)
void	x_BasicCleanupSeqFeat_data_data_region_ETC (std::string &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_product_ETC (std::string &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_quals_E_E_ETC (CRNA_qual &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_quals_E_ETC (CRNA_qual &arg0)
template<typename Tcontainer_ncbi_cref_crna_qual_ >
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_quals_ETC (Tcontainer_ncbi_cref_crna_qual_ &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_ETC (CRNA_qual_set &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_ETC (CRNA_gen &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_ETC (CRNA_gen &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_name_ETC (std::string &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_tRNA_tRNA_ETC (CTrna_ext &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_tRNA_ETC (CTrna_ext &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_ETC (CRNA_ref::C_Ext &arg0)
void	x_BasicCleanupSeqFeat_data_data_rna_rna (CRNA_ref &arg0)
void	x_BasicCleanupSeqFeat_data_data_rna (CRNA_ref &arg0)
void	x_BasicCleanupSeqFeat_data_data_site (CSeqFeatData::ESite &arg0)
template<typename Tcontainer_ncbi_cref_cprot_ref_ >
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_ETC (Tcontainer_ncbi_cref_cprot_ref_ &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_txorg_ETC (COrg_ref &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_ETC (CTxinit &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_ETC (CTxinit &arg0)
void	x_BasicCleanupSeqFeat_ext_ext1769_ETC (CUser_object &arg0)
void	x_BasicCleanupSeqFeat_ext_ETC (CUser_object &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence_E_variation (CVariation_ref &arg0)
template<typename Tcvariation_ref_container_ncbi_cref_c_e_consequence_c_e_consequence >
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence_E (Tcvariation_ref_container_ncbi_cref_c_e_consequence_c_e_consequence &arg0)
template<typename Tcontainer_ncbi_cref_c_e_consequence_ >
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence (Tcontainer_ncbi_cref_c_e_consequence_ &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_E_seq_ETC (CDelta_item::C_Seq &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_E_ETC (CDelta_item &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_ETC (CDelta_item &arg0)
template<typename Tcontainer_ncbi_cref_cdelta_item_ >
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_ETC (Tcontainer_ncbi_cref_cdelta_item_ &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_ETC (CVariation_inst &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_ETC (CVariation_inst &arg0)
template<typename Tcvariation_ref_container_ncbi_cref_c_e_somatic_origin_c_e_somatic_origin >
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_E_ETC (Tcvariation_ref_container_ncbi_cref_c_e_somatic_origin_c_e_somatic_origin &arg0)
template<typename Tcontainer_ncbi_cref_c_e_somatic_origin_ >
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_ETC (Tcontainer_ncbi_cref_c_e_somatic_origin_ &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_E1804_ETC (CVariation_ref &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_set_variations_E (CVariation_ref &arg0)
template<typename Tcontainer_ncbi_cref_cvariation_ref_ >
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_set_variations (Tcontainer_ncbi_cref_cvariation_ref_ &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_set (CVariation_ref::C_Data::C_Set &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data (CVariation_ref::C_Data &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation1805_ETC (CVariation_ref &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_ETC (CVariation_ref &arg0)
void	x_BasicCleanupSeqFeat_data (CSeqFeatData &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_location_location_equiv_ETC (CSeq_loc_equiv &arg0)
void	x_BasicCleanupSeqFeat_location_ETC (CSeq_loc &arg0)
template<typename Tcontainer_ncbi_cref_cgb_qual_ >
void	x_BasicCleanupSeqFeat_qual_ETC (Tcontainer_ncbi_cref_cgb_qual_ &arg0)
void	x_BasicCleanupSeqFeat_support_support_inference_E_E_basis_basis_ETC (CEvidenceBasis &arg0)
void	x_BasicCleanupSeqFeat_support_support_inference_E_E_basis_ETC (CEvidenceBasis &arg0)
void	x_BasicCleanupSeqFeat_support_support_inference_E_E_ETC (CInferenceSupport &arg0)
void	x_BasicCleanupSeqFeat_support_support_inference_E_ETC (CInferenceSupport &arg0)
template<typename Tcontainer_ncbi_cref_cinferencesupport_ >
void	x_BasicCleanupSeqFeat_support_support_inference_ETC (Tcontainer_ncbi_cref_cinferencesupport_ &arg0)
void	x_BasicCleanupSeqFeat_support_support_model_evidence_E_E_protein_E_ETC (CModelEvidenceItem &arg0)
template<typename Tcontainer_ncbi_cref_cmodelevidenceitem_ >
void	x_BasicCleanupSeqFeat_support_support_model_evidence_E_E_protein_ETC (Tcontainer_ncbi_cref_cmodelevidenceitem_ &arg0)
void	_BasicCleanupSeqFeat_support_support_model_evidence_E_E_ETC (CModelEvidenceSupport &arg0)
void	x_BasicCleanupModelEvidenceSupport (CModelEvidenceSupport &arg0)
template<typename Tcontainer_ncbi_cref_cmodelevidencesupport_ >
void	x_BasicCleanupSeqFeat_support_support_model_evidence_ETC (Tcontainer_ncbi_cref_cmodelevidencesupport_ &arg0)
void	x_BasicCleanupSeqFeatSupport (CSeqFeatSupport &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org (COrg_ref &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_ETC (CBioSource &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_ETC (CCdregion &arg0)
void	x_BasicCleanupSeqFeatXrefPub (CPubdesc &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_ETC (CRNA_ref &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_data_ETC (CSeqFeatData &arg0)
void	x_BasicCleanupSeqFeat_xref_E_E_data_ETC (CSeqFeatData &arg0)
void	x_BasicCleanupSeqFeatXref (CSeqFeatXref &arg0)
template<typename Tcontainer_ncbi_cref_cseqfeatxref_ >
void	x_BasicCleanupSeqFeat_xref_ETC (Tcontainer_ncbi_cref_cseqfeatxref_ &arg0)
template<typename TSeqFeatContainer >
void	x_BasicCleanupSeqFeats (TSeqFeatContainer &feats)
void	x_BasicCleanupSeqGraph (CSeq_graph &arg0)
template<typename Tcontainer_ncbi_cref_cseq_graph_ >
void	x_BasicCleanupSeqAnnotGraph (Tcontainer_ncbi_cref_cseq_graph_ &arg0)
void	x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_scaled_int_scaled_data (CSeqTable_multi_data &arg0)
void	x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_scaled_int_scaled (CScaled_int_multi_data &arg0)
void	x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_scaled (CScaled_int_multi_data &arg0)
void	x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_real_scaled_real_scaled_data (CSeqTable_multi_data &arg0)
void	x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_real_scaled_real_scaled (CScaled_real_multi_data &arg0)
void	x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_real_scaled (CScaled_real_multi_data &arg0)
void	x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_int_delta1713_ETC (CSeqTable_multi_data &arg0)
void	x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_delta (CSeqTable_multi_data &arg0)
void	x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data1712_ETC (CSeqTable_multi_data &arg0)
void	x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_ETC (CSeqTable_multi_data &arg0)
void	x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_sparse_other_sparse_other_ETC (CSeqTable_single_data &arg0)
void	x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_sparse_other_ETC (CSeqTable_single_data &arg0)
void	x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_ETC (CSeqTable_column &arg0)
template<typename Tcontainer_ncbi_cref_cseqtable_column_ >
void	x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_ETC (Tcontainer_ncbi_cref_cseqtable_column_ &arg0)
void	x_BasicCleanupSeqTable (CSeq_table &arg0)
void	x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_E_align_ETC (CAlign_def &arg0)
void	x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_ETC (CAnnotdesc &arg0)
template<typename Tcontainer_ncbi_cref_cannotdesc_ >
void	x_BasicCleanupBioseqSet_annot_E_E_desc_desc_ETC (Tcontainer_ncbi_cref_cannotdesc_ &arg0)
void	x_BasicCleanupBioseqSet_annot_E_E_desc_ETC (CAnnot_descr &arg0)
template<typename Tcontainer_ncbi_cref_cseq_annot_ >
void	x_BasicCleanupBioseq_annot (Tcontainer_ncbi_cref_cseq_annot_ &arg0)
void	x_BasicCleanupDescComment (std::string &arg0)
void	x_BasicCleanupEMBLBlock (CEMBL_block &arg0)
void	x_BasicCleanupGBBlock (CGB_block &arg0)
void	x_BasicCleanupMolInfo (CMolInfo &arg0)
void	x_BasicCleanupPDBBlock (CPDB_block &arg0)
void	x_BasicCleanupPIRBlock (CPIR_block &arg0)
void	x_BasicCleanupDescRegion (std::string &arg0)
void	x_BasicCleanupSPBlock (CSP_block &arg0)
void	x_BasicCleanupDescTitle (std::string &arg0)
void	x_BasicCleanupBioseq_descr_descr_E (CSeqdesc &arg0)
void	x_BasicCleanupBioseq_descr (CSeq_descr &arg0)
void	x_BasicCleanupDeltaExt (CDelta_ext &arg0)
void	x_BasicCleanupBioseq_inst_inst_ext_ext_map (CMap_ext &arg0)
void	x_BasicCleanupBioseqSet_seq_set_E_E_seq_seq_inst_inst_ext_ext_seg_ETC (CSeg_ext &arg0)
void	x_BasicCleanupSeqExt (CSeq_ext &arg0)
void	x_BasicCleanupSeqHistDeleted (CSeq_hist::C_Deleted &arg0)
void	x_BasicCleanupSeqHistRec (CSeq_hist_rec &arg0)
void	x_BasicCleanupSeqHist (CSeq_hist &arg0)
void	x_BasicCleanupBioseq_inst (CSeq_inst &arg0)
template<typename Tcontainer_ncbi_cref_cseq_annot_ >
void	x_BasicCleanupSeqAnnots (Tcontainer_ncbi_cref_cseq_annot_ &arg0)
void	x_BasicCleanupBioseqSetDesc (CSeqdesc &arg0)
void	x_BasicCleanupBioseqSet_descr_ETC (CSeq_descr &arg0)
void	x_BasicCleanupSeqEntry_set (CBioseq_set &arg0)
void	x_BasicCleanupSeqSubmit_data_annots_E (CSeq_annot &arg0)
template<typename Tcontainer_ncbi_cref_cseq_annot_ >
void	x_BasicCleanupSeqSubmit_data_annots (Tcontainer_ncbi_cref_cseq_annot_ &arg0)
void	x_BasicCleanupSeqSubmit_data (CSeq_submit::C_Data &arg0)
void	x_BasicCleanupCitSub (CCit_sub &arg0, bool in_submit_block=false)
void	x_BasicCleanupContactInfo (CContact_info &arg0)
void	x_BasicCleanupSeqSubmit_sub (CSubmit_block &arg0)
void	x_BasicCleanupSeqAnnotData (CSeq_annot::C_Data &arg0)
void	x_BasicCleanupBioseqSet_seq_set_E (CSeq_entry &arg0)
template<typename Tcontainer_ncbi_cref_cseq_entry_ >
void	x_BasicCleanupBioseqSet_seq_set (Tcontainer_ncbi_cref_cseq_entry_ &arg0)

Private Attributes
CScope &	m_Scope
CNewCleanup_imp &	m_NewCleanup
CBioseq *	m_LastArg_BasicCleanupBioseq
CSeq_feat *	m_pCurrentSeqFeat
CBioSource *	m_pCurrentBioSource
CSeq_inst *	m_LastArg_x_BasicCleanupBioseq_inst_inst
int	m_Dummy

Detailed Description

This file was generated by application DATATOOL.

ATTENTION: Don't edit or commit this file into SVN as this file will be overridden (by DATATOOL) without warning!

Definition at line 157 of file autogenerated_cleanup.hpp.

Constructor & Destructor Documentation

CAutogeneratedCleanup()

CAutogeneratedCleanup::CAutogeneratedCleanup ( CScope &  scope, CNewCleanup_imp &  newCleanup  )

inline

Definition at line 159 of file autogenerated_cleanup.hpp.

Member Function Documentation

_BasicCleanupSeqFeat_support_support_model_evidence_E_E_ETC()

void CAutogeneratedCleanup::_BasicCleanupSeqFeat_support_support_model_evidence_E_E_ETC ( CModelEvidenceSupport &  arg0 )

private

BasicCleanupBioseq()

void CAutogeneratedCleanup::BasicCleanupBioseq

(

CBioseq &

arg0

)

Definition at line 2520 of file autogenerated_cleanup.cpp.

References CBioseq_Base::IsSetAnnot(), CBioseq_Base::IsSetDescr(), CBioseq_Base::IsSetId(), CBioseq_Base::IsSetInst(), m_LastArg_BasicCleanupBioseq, m_NewCleanup, CNewCleanup_imp::ProtSeqBC(), CBioseq_Base::SetAnnot(), CBioseq_Base::SetDescr(), CBioseq_Base::SetId(), CBioseq_Base::SetInst(), CNewCleanup_imp::x_AddPartialToProteinTitle(), x_BasicCleanupBioseq_annot(), x_BasicCleanupBioseq_descr(), x_BasicCleanupBioseq_inst(), x_BasicCleanupSeqIds(), CNewCleanup_imp::x_ClearEmptyDescr(), and CNewCleanup_imp::x_RemoveSingleStrand().

Referenced by CNewCleanup_imp::BasicCleanupBioseq(), BasicCleanupSeqEntry(), and x_BasicCleanupBioseqSet_seq_set_E().

BasicCleanupBioseqSet()

void CAutogeneratedCleanup::BasicCleanupBioseqSet

(

CBioseq_set &

arg0

)

Definition at line 2780 of file autogenerated_cleanup.cpp.

References CBioseq_set_Base::IsSetAnnot(), CBioseq_set_Base::IsSetDate(), CBioseq_set_Base::IsSetDescr(), CBioseq_set_Base::IsSetSeq_set(), m_NewCleanup, CNewCleanup_imp::SeqsetBC(), CBioseq_set_Base::SetAnnot(), CBioseq_set_Base::SetDate(), CBioseq_set_Base::SetDescr(), CBioseq_set_Base::SetSeq_set(), x_BasicCleanupBioseqSet_descr_ETC(), x_BasicCleanupBioseqSet_seq_set(), x_BasicCleanupDate(), x_BasicCleanupSeqAnnots(), and CNewCleanup_imp::x_ClearEmptyDescr().

Referenced by CNewCleanup_imp::BasicCleanupBioseqSet(), and x_BasicCleanupBioseqSet_seq_set_E().

BasicCleanupSeqAnnot()

void CAutogeneratedCleanup::BasicCleanupSeqAnnot

(

CSeq_annot &

arg0

)

Definition at line 2232 of file autogenerated_cleanup.cpp.

References CSeq_annot_Base::IsSetData(), CSeq_annot_Base::IsSetDesc(), CSeq_annot_Base::SetData(), CSeq_annot_Base::SetDesc(), x_BasicCleanupBioseqSet_annot_E_E_desc_ETC(), and x_BasicCleanupSeqAnnotData().

Referenced by CNewCleanup_imp::BasicCleanupSeqAnnot(), x_BasicCleanupBioseq_annot(), and x_BasicCleanupSeqAnnots().

BasicCleanupSeqdesc()

void CAutogeneratedCleanup::BasicCleanupSeqdesc ( CSeqdesc &  arg0 )

inline

Definition at line 177 of file autogenerated_cleanup.hpp.

Referenced by CNewCleanup_imp::BasicCleanup().

BasicCleanupSeqEntry()

void CAutogeneratedCleanup::BasicCleanupSeqEntry

(

CSeq_entry &

arg0

)

Definition at line 2648 of file autogenerated_cleanup.cpp.

References BasicCleanupBioseq(), CSeq_entry_Base::e_Seq, CSeq_entry_Base::e_Set, CNewCleanup_imp::EnteringEntry(), CNewCleanup_imp::LeavingEntry(), m_NewCleanup, CSeq_entry_Base::SetSeq(), CSeq_entry_Base::SetSet(), CSeq_entry_Base::Which(), x_BasicCleanupSeqEntry_set(), and CNewCleanup_imp::x_CopyGBBlockDivToOrgnameDiv().

Referenced by CNewCleanup_imp::BasicCleanupSeqEntry(), x_BasicCleanupSeqEntry_set(), and x_BasicCleanupSeqSubmit_data().

BasicCleanupSeqFeat()

void CAutogeneratedCleanup::BasicCleanupSeqFeat

(

CSeq_feat &

arg0_raw

)

Definition at line 1913 of file autogenerated_cleanup.cpp.

References CSerialObject::Assign(), CLEAN_AND_COMPRESS_STRING_MEMBER, CLEAN_STRING_MEMBER, CScope::GetSeq_featHandle(), CNewCleanup_imp::ImpFeatBC(), CSeq_feat_Base::IsSetCit(), CSeq_feat_Base::IsSetComment(), CSeq_feat_Base::IsSetData(), CSeq_feat_Base::IsSetDbxref(), CSeq_feat_Base::IsSetExt(), CSeq_feat_Base::IsSetLocation(), CSeq_feat_Base::IsSetProduct(), CSeq_feat_Base::IsSetQual(), CSeq_feat_Base::IsSetSupport(), CSeq_feat_Base::IsSetTitle(), CSeq_feat_Base::IsSetXref(), m_NewCleanup, m_pCurrentSeqFeat, m_Scope, CSeq_feat_EditHandle::Replace(), CRef< C, Locker >::Reset(), CNewCleanup_imp::SeqfeatBC(), CSeq_feat_Base::SetCit(), CSeq_feat_Base::SetComment(), CSeq_feat_Base::SetData(), CSeq_feat_Base::SetDbxref(), CSeq_feat_Base::SetExt(), CSeq_feat_Base::SetLocation(), CSeq_feat_Base::SetProduct(), CSeq_feat_Base::SetQual(), CSeq_feat_Base::SetSupport(), CSeq_feat_Base::SetTitle(), CSeq_feat_Base::SetXref(), x_BasicCleanupSeqFeat_cit_ETC(), x_BasicCleanupSeqFeat_comment(), x_BasicCleanupSeqFeat_data(), x_BasicCleanupSeqFeat_dbxref_ETC(), x_BasicCleanupSeqFeat_ext_ETC(), x_BasicCleanupSeqFeat_location_ETC(), x_BasicCleanupSeqFeat_qual_ETC(), x_BasicCleanupSeqFeat_xref_ETC(), x_BasicCleanupSeqFeatSupport(), x_BasicCleanupSeqLoc(), CNewCleanup_imp::x_DecodeXMLMarkChanged(), and CNewCleanup_imp::x_PostSeqFeat().

Referenced by CNewCleanup_imp::BasicCleanupBioSource(), CNewCleanup_imp::BasicCleanupSeqFeat(), and x_BasicCleanupSeqFeats().

BasicCleanupSeqSubmit()

void CAutogeneratedCleanup::BasicCleanupSeqSubmit

(

CSeq_submit &

arg0

)

Definition at line 2743 of file autogenerated_cleanup.cpp.

References CSeq_submit_Base::IsSetData(), CSeq_submit_Base::IsSetSub(), CSeq_submit_Base::SetData(), CSeq_submit_Base::SetSub(), x_BasicCleanupSeqSubmit_data(), and x_BasicCleanupSeqSubmit_sub().

Referenced by CNewCleanup_imp::BasicCleanupSeqSubmit().

x_BasicCleanupAffil()

void CAutogeneratedCleanup::x_BasicCleanupAffil ( CAffil &  arg0 )

private

Definition at line 345 of file autogenerated_cleanup.cpp.

References CAffil_Base::IsStd(), CAffil_Base::IsStr(), m_NewCleanup, CAffil_Base::SetStd(), CAffil_Base::SetStr(), x_BasicCleanupAffilStd(), CNewCleanup_imp::x_CleanupStringMarkChanged(), and CNewCleanup_imp::x_CompressStringSpacesMarkChanged().

Referenced by x_BasicCleanupAuthList(), x_BasicCleanupAuthor(), x_BasicCleanupImprint(), and x_BasicCleanupMeeting().

x_BasicCleanupAffilStd()

void CAutogeneratedCleanup::x_BasicCleanupAffilStd ( CAffil::C_Std &  arg0 )

private

Definition at line 330 of file autogenerated_cleanup.cpp.

References CLEAN_AND_COMPRESS_STRING_MEMBER.

Referenced by x_BasicCleanupAffil().

x_BasicCleanupAlignSegs()

void CAutogeneratedCleanup::x_BasicCleanupAlignSegs ( CSeq_align::C_Segs &  arg0 )

private

Definition at line 280 of file autogenerated_cleanup.cpp.

References CSeq_align_Base::C_Segs::e_Dendiag, CSeq_align_Base::C_Segs::e_Denseg, CSeq_align_Base::C_Segs::e_Disc, CSeq_align_Base::C_Segs::e_Packed, CSeq_align_Base::C_Segs::e_Sparse, CSeq_align_Base::C_Segs::e_Spliced, CSeq_align_Base::C_Segs::e_Std, CSeq_align_Base::C_Segs::SetDendiag(), CSeq_align_Base::C_Segs::SetDenseg(), CSeq_align_Base::C_Segs::SetDisc(), CSeq_align_Base::C_Segs::SetPacked(), CSeq_align_Base::C_Segs::SetSparse(), CSeq_align_Base::C_Segs::SetSpliced(), CSeq_align_Base::C_Segs::SetStd(), CSeq_align_Base::C_Segs::Which(), x_BasicCleanupDenseDiags(), x_BasicCleanupDenseg(), x_BasicCleanupPackedSeg(), x_BasicCleanupSeqAlignSet(), x_BasicCleanupSplicedSeg(), x_BasicCleanupStdSeg(), and x_BasicCleaupSparseSeg().

Referenced by x_BasicCleanupSeqAlign().

x_BasicCleanupAuthList()

void CAutogeneratedCleanup::x_BasicCleanupAuthList ( CAuth_list &  arg0, bool  fix_initials = false  )

private

Definition at line 379 of file autogenerated_cleanup.cpp.

References CAuth_list_Base::IsSetAffil(), CAuth_list_Base::IsSetNames(), m_NewCleanup, CAuth_list_Base::SetAffil(), CAuth_list_Base::SetNames(), CNewCleanup_imp::x_AuthListBCWithFixInitials(), x_BasicCleanupAffil(), and x_BasicCleanupAuthListNames().

Referenced by x_BasicCleanupCitArt(), x_BasicCleanupCitBook(), x_BasicCleanupCitGen(), x_BasicCleanupCitPat(), and x_BasicCleanupCitSub().

x_BasicCleanupAuthListNames()

void CAutogeneratedCleanup::x_BasicCleanupAuthListNames ( CAuth_list::C_Names &  arg0 )

private

Definition at line 369 of file autogenerated_cleanup.cpp.

References CAuth_list_Base::C_Names::IsStd(), CAuth_list_Base::C_Names::SetStd(), and x_BasicCleanupAuthor().

Referenced by x_BasicCleanupAuthList().

x_BasicCleanupAuthor()

void CAutogeneratedCleanup::x_BasicCleanupAuthor ( CAuthor &  arg0 )

private

Definition at line 361 of file autogenerated_cleanup.cpp.

References CAuthor_Base::IsSetAffil(), CAuthor_Base::SetAffil(), and x_BasicCleanupAffil().

Referenced by x_BasicCleanupAuthListNames(), and x_BasicCleanupContactInfo().

x_BasicCleanupBioseq_annot()

template<typename Tcontainer_ncbi_cref_cseq_annot_ >

void CAutogeneratedCleanup::x_BasicCleanupBioseq_annot ( Tcontainer_ncbi_cref_cseq_annot_ &  arg0 )

private

Definition at line 2244 of file autogenerated_cleanup.cpp.

References BasicCleanupSeqAnnot(), and NON_CONST_ITERATE.

Referenced by BasicCleanupBioseq().

x_BasicCleanupBioseq_descr()

void CAutogeneratedCleanup::x_BasicCleanupBioseq_descr ( CSeq_descr &  arg0 )

private

Definition at line 2407 of file autogenerated_cleanup.cpp.

References CSeq_descr_Base::IsSet(), CSeq_descr_Base::Set(), and x_BasicCleanupBioseq_descr_descr_E().

Referenced by BasicCleanupBioseq().

x_BasicCleanupBioseq_descr_descr_E()

void CAutogeneratedCleanup::x_BasicCleanupBioseq_descr_descr_E ( CSeqdesc &  arg0 )

private

Definition at line 2344 of file autogenerated_cleanup.cpp.

References CSeqdesc_Base::e_Comment, CSeqdesc_Base::e_Create_date, CSeqdesc_Base::e_Embl, CSeqdesc_Base::e_Genbank, CSeqdesc_Base::e_Modelev, CSeqdesc_Base::e_Molinfo, CSeqdesc_Base::e_Name, CSeqdesc_Base::e_Num, CSeqdesc_Base::e_Org, CSeqdesc_Base::e_Pdb, CSeqdesc_Base::e_Pir, CSeqdesc_Base::e_Pub, CSeqdesc_Base::e_Region, CSeqdesc_Base::e_Source, CSeqdesc_Base::e_Sp, CSeqdesc_Base::e_Title, CSeqdesc_Base::e_Update_date, CSeqdesc_Base::e_User, m_NewCleanup, CSeqdesc_Base::SetComment(), CSeqdesc_Base::SetCreate_date(), CSeqdesc_Base::SetEmbl(), CSeqdesc_Base::SetGenbank(), CSeqdesc_Base::SetModelev(), CSeqdesc_Base::SetMolinfo(), CSeqdesc_Base::SetName(), CSeqdesc_Base::SetNum(), CSeqdesc_Base::SetOrg(), CSeqdesc_Base::SetPdb(), CSeqdesc_Base::SetPir(), CSeqdesc_Base::SetPub(), CSeqdesc_Base::SetRegion(), CSeqdesc_Base::SetSource(), CSeqdesc_Base::SetSp(), CSeqdesc_Base::SetTitle(), CSeqdesc_Base::SetUpdate_date(), CSeqdesc_Base::SetUser(), CSeqdesc_Base::Which(), x_BasicCleanupDate(), x_BasicCleanupDescComment(), x_BasicCleanupDescRegion(), x_BasicCleanupDescTitle(), x_BasicCleanupEMBLBlock(), x_BasicCleanupGBBlock(), x_BasicCleanupModelEvidenceSupport(), x_BasicCleanupMolInfo(), x_BasicCleanupNumbering(), x_BasicCleanupPDBBlock(), x_BasicCleanupPIRBlock(), x_BasicCleanupSeqFeat_data_data_pub_ETC(), x_BasicCleanupSeqFeat_ext_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_txorg_ETC(), x_BasicCleanupSPBlock(), and CNewCleanup_imp::x_CleanupStringMarkChanged().

Referenced by x_BasicCleanupBioseq_descr().

x_BasicCleanupBioseq_inst()

void CAutogeneratedCleanup::x_BasicCleanupBioseq_inst ( CSeq_inst &  arg0 )

private

Definition at line 2505 of file autogenerated_cleanup.cpp.

References CSeq_inst_Base::IsSetExt(), CSeq_inst_Base::IsSetHist(), m_LastArg_x_BasicCleanupBioseq_inst_inst, CSeq_inst_Base::SetExt(), CSeq_inst_Base::SetHist(), x_BasicCleanupSeqExt(), and x_BasicCleanupSeqHist().

Referenced by BasicCleanupBioseq().

x_BasicCleanupBioseq_inst_inst_ext_ext_map()

void CAutogeneratedCleanup::x_BasicCleanupBioseq_inst_inst_ext_ext_map ( CMap_ext &  arg0 )

private

Definition at line 2430 of file autogenerated_cleanup.cpp.

References CMap_ext_Base::IsSet(), CMap_ext_Base::Set(), and x_BasicCleanupSeqFeats().

Referenced by x_BasicCleanupSeqExt().

x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_E_align_ETC()

void CAutogeneratedCleanup::x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_E_align_ETC ( CAlign_def &  arg0 )

private

Definition at line 2183 of file autogenerated_cleanup.cpp.

References CAlign_def_Base::IsSetIds(), CAlign_def_Base::SetIds(), and x_BasicCleanupSeqIds().

Referenced by x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_ETC().

x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_ETC()

void CAutogeneratedCleanup::x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_ETC ( CAnnotdesc &  arg0 )

private

Definition at line 2190 of file autogenerated_cleanup.cpp.

References CAnnotdesc_Base::e_Align, CAnnotdesc_Base::e_Create_date, CAnnotdesc_Base::e_Pub, CAnnotdesc_Base::e_Region, CAnnotdesc_Base::e_Src, CAnnotdesc_Base::e_Update_date, CAnnotdesc_Base::SetAlign(), CAnnotdesc_Base::SetCreate_date(), CAnnotdesc_Base::SetPub(), CAnnotdesc_Base::SetRegion(), CAnnotdesc_Base::SetSrc(), CAnnotdesc_Base::SetUpdate_date(), CAnnotdesc_Base::Which(), x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_E_align_ETC(), x_BasicCleanupDate(), x_BasicCleanupSeqFeatXrefPub(), x_BasicCleanupSeqId(), and x_BasicCleanupSeqLoc().

Referenced by x_BasicCleanupBioseqSet_annot_E_E_desc_desc_ETC().

x_BasicCleanupBioseqSet_annot_E_E_desc_desc_ETC()

template<typename Tcontainer_ncbi_cref_cannotdesc_ >

void CAutogeneratedCleanup::x_BasicCleanupBioseqSet_annot_E_E_desc_desc_ETC ( Tcontainer_ncbi_cref_cannotdesc_ &  arg0 )

private

Definition at line 2218 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_ETC().

Referenced by x_BasicCleanupBioseqSet_annot_E_E_desc_ETC().

x_BasicCleanupBioseqSet_annot_E_E_desc_ETC()

void CAutogeneratedCleanup::x_BasicCleanupBioseqSet_annot_E_E_desc_ETC ( CAnnot_descr &  arg0 )

private

Definition at line 2225 of file autogenerated_cleanup.cpp.

References CAnnot_descr_Base::IsSet(), CAnnot_descr_Base::Set(), and x_BasicCleanupBioseqSet_annot_E_E_desc_desc_ETC().

Referenced by BasicCleanupSeqAnnot(), and x_BasicCleanupSeqSubmit_data_annots_E().

x_BasicCleanupBioseqSet_descr_ETC()

void CAutogeneratedCleanup::x_BasicCleanupBioseqSet_descr_ETC ( CSeq_descr &  arg0 )

private

Definition at line 2617 of file autogenerated_cleanup.cpp.

References CSeq_descr_Base::IsSet(), CSeq_descr_Base::Set(), and x_BasicCleanupBioseqSetDesc().

Referenced by BasicCleanupBioseqSet(), and x_BasicCleanupSeqEntry_set().

x_BasicCleanupBioseqSet_seq_set()

template<typename Tcontainer_ncbi_cref_cseq_entry_ >

void CAutogeneratedCleanup::x_BasicCleanupBioseqSet_seq_set ( Tcontainer_ncbi_cref_cseq_entry_ &  arg0 )

private

Definition at line 2773 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupBioseqSet_seq_set_E().

Referenced by BasicCleanupBioseqSet().

x_BasicCleanupBioseqSet_seq_set_E()

void CAutogeneratedCleanup::x_BasicCleanupBioseqSet_seq_set_E ( CSeq_entry &  arg0 )

private

Definition at line 2754 of file autogenerated_cleanup.cpp.

References BasicCleanupBioseq(), BasicCleanupBioseqSet(), CSeq_entry_Base::e_Seq, CSeq_entry_Base::e_Set, CNewCleanup_imp::EnteringEntry(), CNewCleanup_imp::LeavingEntry(), m_NewCleanup, CSeq_entry_Base::SetSeq(), CSeq_entry_Base::SetSet(), CSeq_entry_Base::Which(), and CNewCleanup_imp::x_CopyGBBlockDivToOrgnameDiv().

Referenced by x_BasicCleanupBioseqSet_seq_set().

x_BasicCleanupBioseqSet_seq_set_E_E_seq_seq_inst_inst_ext_ext_seg_ETC()

void CAutogeneratedCleanup::x_BasicCleanupBioseqSet_seq_set_E_E_seq_seq_inst_inst_ext_ext_seg_ETC ( CSeg_ext &  arg0 )

private

Definition at line 2438 of file autogenerated_cleanup.cpp.

References CSeg_ext_Base::IsSet(), CSeg_ext_Base::Set(), and x_BasicCleanupSeqLocs().

Referenced by x_BasicCleanupSeqExt().

x_BasicCleanupBioseqSetDesc()

void CAutogeneratedCleanup::x_BasicCleanupBioseqSetDesc ( CSeqdesc &  arg0 )

private

Definition at line 2554 of file autogenerated_cleanup.cpp.

References CSeqdesc_Base::e_Comment, CSeqdesc_Base::e_Create_date, CSeqdesc_Base::e_Embl, CSeqdesc_Base::e_Genbank, CSeqdesc_Base::e_Modelev, CSeqdesc_Base::e_Molinfo, CSeqdesc_Base::e_Name, CSeqdesc_Base::e_Num, CSeqdesc_Base::e_Org, CSeqdesc_Base::e_Pdb, CSeqdesc_Base::e_Pir, CSeqdesc_Base::e_Pub, CSeqdesc_Base::e_Region, CSeqdesc_Base::e_Source, CSeqdesc_Base::e_Sp, CSeqdesc_Base::e_Title, CSeqdesc_Base::e_Update_date, CSeqdesc_Base::e_User, m_NewCleanup, CNewCleanup_imp::MolInfoBC(), CSeqdesc_Base::SetComment(), CSeqdesc_Base::SetCreate_date(), CSeqdesc_Base::SetEmbl(), CSeqdesc_Base::SetGenbank(), CSeqdesc_Base::SetModelev(), CSeqdesc_Base::SetMolinfo(), CSeqdesc_Base::SetName(), CSeqdesc_Base::SetNum(), CSeqdesc_Base::SetOrg(), CSeqdesc_Base::SetPdb(), CSeqdesc_Base::SetPir(), CSeqdesc_Base::SetPub(), CSeqdesc_Base::SetRegion(), CSeqdesc_Base::SetSource(), CSeqdesc_Base::SetSp(), CSeqdesc_Base::SetTitle(), CSeqdesc_Base::SetUpdate_date(), CSeqdesc_Base::SetUser(), CSeqdesc_Base::Which(), x_BasicCleanupDate(), x_BasicCleanupDescComment(), x_BasicCleanupDescRegion(), x_BasicCleanupDescTitle(), x_BasicCleanupEMBLBlock(), x_BasicCleanupGBBlock(), x_BasicCleanupModelEvidenceSupport(), x_BasicCleanupNumbering(), x_BasicCleanupPDBBlock(), x_BasicCleanupPIRBlock(), x_BasicCleanupSeqFeat_data_data_pub_ETC(), x_BasicCleanupSeqFeat_ext_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_txorg_ETC(), x_BasicCleanupSPBlock(), and CNewCleanup_imp::x_CleanupStringMarkChanged().

Referenced by x_BasicCleanupBioseqSet_descr_ETC().

x_BasicCleanupCitArt()

void CAutogeneratedCleanup::x_BasicCleanupCitArt ( CCit_art &  arg0 )

private

Definition at line 506 of file autogenerated_cleanup.cpp.

References CCit_art_Base::IsSetAuthors(), CCit_art_Base::IsSetFrom(), CCit_art_Base::IsSetTitle(), CCit_art_Base::SetAuthors(), CCit_art_Base::SetFrom(), CCit_art_Base::SetTitle(), x_BasicCleanupAuthList(), x_BasicCleanupCitArtFrom(), and x_BasicCleanupTitle().

Referenced by x_BasicCleanupMedlineEntry(), x_BasicCleanupPub(), and x_BasicCleanupSeqFeat_cit_ETC().

x_BasicCleanupCitArtFrom()

void CAutogeneratedCleanup::x_BasicCleanupCitArtFrom ( CCit_art::C_From &  arg0 )

private

Definition at line 477 of file autogenerated_cleanup.cpp.

References CCit_art_Base::C_From::e_Book, CCit_art_Base::C_From::e_Journal, CCit_art_Base::C_From::e_Proc, CCit_art_Base::C_From::SetBook(), CCit_art_Base::C_From::SetJournal(), CCit_art_Base::C_From::SetProc(), CCit_art_Base::C_From::Which(), x_BasicCleanupCitBook(), x_BasicCleanupCitJournal(), and x_BasicCleanupCitProc().

Referenced by x_BasicCleanupCitArt().

x_BasicCleanupCitBook()

void CAutogeneratedCleanup::x_BasicCleanupCitBook ( CCit_book &  arg0 )

private

Definition at line 435 of file autogenerated_cleanup.cpp.

References CCit_book_Base::IsSetAuthors(), CCit_book_Base::IsSetImp(), CCit_book_Base::SetAuthors(), CCit_book_Base::SetImp(), x_BasicCleanupAuthList(), and x_BasicCleanupImprint().

Referenced by x_BasicCleanupCitArtFrom(), x_BasicCleanupCitLet(), x_BasicCleanupCitProc(), x_BasicCleanupPub(), and x_BasicCleanupSeqFeat_cit_ETC().

x_BasicCleanupCitGen()

void CAutogeneratedCleanup::x_BasicCleanupCitGen ( CCit_gen &  arg0 )

private

Definition at line 587 of file autogenerated_cleanup.cpp.

References CCit_gen_Base::IsSetAuthors(), CCit_gen_Base::IsSetDate(), CCit_gen_Base::SetAuthors(), CCit_gen_Base::SetDate(), x_BasicCleanupAuthList(), and x_BasicCleanupDate().

Referenced by x_BasicCleanupPub().

x_BasicCleanupCitJournal()

void CAutogeneratedCleanup::x_BasicCleanupCitJournal ( CCit_jour &  arg0 )

private

Definition at line 446 of file autogenerated_cleanup.cpp.

References CCit_jour_Base::IsSetImp(), CCit_jour_Base::SetImp(), and x_BasicCleanupImprint().

Referenced by x_BasicCleanupCitArtFrom(), x_BasicCleanupPub(), and x_BasicCleanupSeqFeat_cit_ETC().

x_BasicCleanupCitLet()

void CAutogeneratedCleanup::x_BasicCleanupCitLet ( CCit_let &  arg0 )

private

Definition at line 598 of file autogenerated_cleanup.cpp.

References CCit_let_Base::IsSetCit(), CCit_let_Base::SetCit(), and x_BasicCleanupCitBook().

Referenced by x_BasicCleanupPub().

x_BasicCleanupCitPat()

void CAutogeneratedCleanup::x_BasicCleanupCitPat ( CCit_pat &  arg0 )

private

Definition at line 539 of file autogenerated_cleanup.cpp.

References CCit_pat_Base::IsSetApp_date(), CCit_pat_Base::IsSetApplicants(), CCit_pat_Base::IsSetAssignees(), CCit_pat_Base::IsSetAuthors(), CCit_pat_Base::IsSetDate_issue(), CCit_pat_Base::IsSetPriority(), CCit_pat_Base::SetApp_date(), CCit_pat_Base::SetApplicants(), CCit_pat_Base::SetAssignees(), CCit_pat_Base::SetAuthors(), CCit_pat_Base::SetDate_issue(), CCit_pat_Base::SetPriority(), x_BasicCleanupAuthList(), x_BasicCleanupDate(), and x_BasicCleanupPatentPriority().

Referenced by x_BasicCleanupPub(), and x_BasicCleanupSeqFeat_cit_ETC().

x_BasicCleanupCitProc()

void CAutogeneratedCleanup::x_BasicCleanupCitProc ( CCit_proc &  arg0 )

private

Definition at line 466 of file autogenerated_cleanup.cpp.

References CCit_proc_Base::IsSetBook(), CCit_proc_Base::IsSetMeet(), CCit_proc_Base::SetBook(), CCit_proc_Base::SetMeet(), x_BasicCleanupCitBook(), and x_BasicCleanupMeeting().

Referenced by x_BasicCleanupCitArtFrom(), x_BasicCleanupPub(), and x_BasicCleanupSeqFeat_cit_ETC().

x_BasicCleanupCitSub()

void CAutogeneratedCleanup::x_BasicCleanupCitSub ( CCit_sub &  arg0, bool  in_submit_block = false  )

private

Definition at line 2706 of file autogenerated_cleanup.cpp.

References CCit_sub_Base::IsSetAuthors(), CCit_sub_Base::IsSetDate(), CCit_sub_Base::IsSetImp(), CCit_sub_Base::SetAuthors(), CCit_sub_Base::SetDate(), CCit_sub_Base::SetImp(), x_BasicCleanupAuthList(), x_BasicCleanupDate(), and x_BasicCleanupImprint().

Referenced by x_BasicCleanupPub(), and x_BasicCleanupSeqSubmit_sub().

x_BasicCleanupContactInfo()

void CAutogeneratedCleanup::x_BasicCleanupContactInfo ( CContact_info &  arg0 )

private

Definition at line 2720 of file autogenerated_cleanup.cpp.

References CContact_info_Base::IsSetContact(), CContact_info_Base::SetContact(), and x_BasicCleanupAuthor().

Referenced by x_BasicCleanupSeqSubmit_sub().

x_BasicCleanupDate()

void CAutogeneratedCleanup::x_BasicCleanupDate ( CDate &  date )

private

This file was generated by application DATATOOL.

ATTENTION: Don't edit or commit this file into SVN as this file will be overridden (by DATATOOL) without warning!

Definition at line 45 of file autogenerated_cleanup.cpp.

Referenced by BasicCleanupBioseqSet(), x_BasicCleanupBioseq_descr_descr_E(), x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_ETC(), x_BasicCleanupBioseqSetDesc(), x_BasicCleanupCitGen(), x_BasicCleanupCitPat(), x_BasicCleanupCitSub(), x_BasicCleanupEMBLBlock(), x_BasicCleanupGBBlock(), x_BasicCleanupImprint(), x_BasicCleanupMedlineEntry(), x_BasicCleanupMeeting(), x_BasicCleanupPatentPriority(), x_BasicCleanupPDBBlock(), x_BasicCleanupPubStatusDate(), x_BasicCleanupSeqEntry_set(), x_BasicCleanupSeqHistDeleted(), x_BasicCleanupSeqHistRec(), x_BasicCleanupSeqId(), x_BasicCleanupSeqSubmit_sub(), and x_BasicCleanupSPBlock().

x_BasicCleanupDeltaExt()

void CAutogeneratedCleanup::x_BasicCleanupDeltaExt ( CDelta_ext &  arg0 )

private

Definition at line 2417 of file autogenerated_cleanup.cpp.

References CNewCleanup_imp::DeltaExtBC(), CDelta_ext_Base::IsSet(), m_LastArg_x_BasicCleanupBioseq_inst_inst, m_NewCleanup, CDelta_ext_Base::Set(), and x_BasicCleanupSeqLoc().

Referenced by x_BasicCleanupSeqExt().

x_BasicCleanupDenseDiag()

void CAutogeneratedCleanup::x_BasicCleanupDenseDiag ( CDense_diag &  arg0 )

private

Definition at line 181 of file autogenerated_cleanup.cpp.

References CDense_diag_Base::IsSetIds(), CDense_diag_Base::SetIds(), and x_BasicCleanupSeqIds().

Referenced by x_BasicCleanupDenseDiags().

x_BasicCleanupDenseDiags()

template<typename TDenseDiagContainer >

void CAutogeneratedCleanup::x_BasicCleanupDenseDiags ( TDenseDiagContainer &  dense_diags )

private

Definition at line 189 of file autogenerated_cleanup.cpp.

References x_BasicCleanupDenseDiag().

Referenced by x_BasicCleanupAlignSegs().

x_BasicCleanupDenseg()

void CAutogeneratedCleanup::x_BasicCleanupDenseg ( CDense_seg &  denseg )

private

Definition at line 197 of file autogenerated_cleanup.cpp.

References CDense_seg_Base::IsSetIds(), CDense_seg_Base::SetIds(), and x_BasicCleanupSeqIds().

Referenced by x_BasicCleanupAlignSegs().

x_BasicCleanupDescComment()

void CAutogeneratedCleanup::x_BasicCleanupDescComment ( std::string &  arg0 )

private

Definition at line 2251 of file autogenerated_cleanup.cpp.

References m_NewCleanup, CNewCleanup_imp::x_CleanupStringJunkMarkChanged(), CNewCleanup_imp::x_DecodeXMLMarkChanged(), and CNewCleanup_imp::x_RemoveSpacesBetweenTildesMarkChanged().

Referenced by x_BasicCleanupBioseq_descr_descr_E(), and x_BasicCleanupBioseqSetDesc().

x_BasicCleanupDescRegion()

void CAutogeneratedCleanup::x_BasicCleanupDescRegion ( std::string &  arg0 )

private

Definition at line 2314 of file autogenerated_cleanup.cpp.

References m_NewCleanup, CNewCleanup_imp::x_CleanupStringMarkChanged(), and CNewCleanup_imp::x_ConvertDoubleQuotesMarkChanged().

Referenced by x_BasicCleanupBioseq_descr_descr_E(), and x_BasicCleanupBioseqSetDesc().

x_BasicCleanupDescTitle()

void CAutogeneratedCleanup::x_BasicCleanupDescTitle ( std::string &  arg0 )

private

Definition at line 2337 of file autogenerated_cleanup.cpp.

References m_NewCleanup, CNewCleanup_imp::x_CleanupStringMarkChanged(), CNewCleanup_imp::x_CompressStringSpacesMarkChanged(), and CNewCleanup_imp::x_DecodeXMLMarkChanged().

Referenced by x_BasicCleanupBioseq_descr_descr_E(), and x_BasicCleanupBioseqSetDesc().

x_BasicCleanupEMBLBlock()

void CAutogeneratedCleanup::x_BasicCleanupEMBLBlock ( CEMBL_block &  arg0 )

private

Definition at line 2258 of file autogenerated_cleanup.cpp.

References CNewCleanup_imp::EMBLblockBC(), CEMBL_block_Base::IsSetCreation_date(), CEMBL_block_Base::IsSetUpdate_date(), m_NewCleanup, CEMBL_block_Base::SetCreation_date(), CEMBL_block_Base::SetUpdate_date(), and x_BasicCleanupDate().

Referenced by x_BasicCleanupBioseq_descr_descr_E(), and x_BasicCleanupBioseqSetDesc().

x_BasicCleanupGBBlock()

void CAutogeneratedCleanup::x_BasicCleanupGBBlock ( CGB_block &  arg0 )

private

Definition at line 2270 of file autogenerated_cleanup.cpp.

References CNewCleanup_imp::GBblockBC(), CNewCleanup_imp::GBblockOriginBC(), CGB_block_Base::IsSetEntry_date(), CGB_block_Base::IsSetOrigin(), m_NewCleanup, CGB_block_Base::SetEntry_date(), CGB_block_Base::SetOrigin(), and x_BasicCleanupDate().

Referenced by x_BasicCleanupBioseq_descr_descr_E(), and x_BasicCleanupBioseqSetDesc().

x_BasicCleanupGeneRef()

void CAutogeneratedCleanup::x_BasicCleanupGeneRef ( CGene_ref &  arg0, bool  cleanup_parent_feat  )

private

Definition at line 963 of file autogenerated_cleanup.cpp.

References CLEAN_AND_COMPRESS_STRING_MEMBER, CLEAN_STRING_LIST, CLEAN_STRING_MEMBER, CNewCleanup_imp::GeneFeatBC(), CNewCleanup_imp::GenerefBC(), CGene_ref_Base::IsSetAllele(), CGene_ref_Base::IsSetDesc(), CGene_ref_Base::IsSetLocus(), CGene_ref_Base::IsSetLocus_tag(), CGene_ref_Base::IsSetMaploc(), CGene_ref_Base::IsSetSyn(), m_NewCleanup, m_pCurrentSeqFeat, CGene_ref_Base::SetAllele(), CGene_ref_Base::SetDesc(), CGene_ref_Base::SetLocus(), CGene_ref_Base::SetLocus_tag(), CGene_ref_Base::SetMaploc(), CGene_ref_Base::SetSyn(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_desc_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_locus_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_syn_ETC(), and CNewCleanup_imp::x_ConvertDoubleQuotesMarkChanged().

Referenced by x_BasicCleanupSeqFeat_data(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_ETC(), and x_BasicCleanupSeqFeat_xref_E_E_data_ETC().

x_BasicCleanupImprint()

void CAutogeneratedCleanup::x_BasicCleanupImprint ( CImprint &  arg0 )

private

Definition at line 411 of file autogenerated_cleanup.cpp.

References CLEAN_AND_COMPRESS_STRING_MEMBER, CImprint_Base::IsSetCprt(), CImprint_Base::IsSetDate(), CImprint_Base::IsSetHistory(), CImprint_Base::IsSetPub(), CImprint_Base::SetCprt(), CImprint_Base::SetDate(), CImprint_Base::SetHistory(), CImprint_Base::SetPub(), x_BasicCleanupAffil(), x_BasicCleanupDate(), and x_BasicCleanupPubStatusDateSet().

Referenced by x_BasicCleanupCitBook(), x_BasicCleanupCitJournal(), and x_BasicCleanupCitSub().

x_BasicCleanupMedlineEntry()

void CAutogeneratedCleanup::x_BasicCleanupMedlineEntry ( CMedline_entry &  arg0 )

private

Definition at line 520 of file autogenerated_cleanup.cpp.

References CMedline_entry_Base::IsSetCit(), CMedline_entry_Base::IsSetEm(), CMedline_entry_Base::SetCit(), CMedline_entry_Base::SetEm(), x_BasicCleanupCitArt(), and x_BasicCleanupDate().

Referenced by x_BasicCleanupPub(), and x_BasicCleanupSeqFeat_cit_ETC().

x_BasicCleanupMeeting()

void CAutogeneratedCleanup::x_BasicCleanupMeeting ( CMeeting &  arg0 )

private

Definition at line 454 of file autogenerated_cleanup.cpp.

References CMeeting_Base::IsSetDate(), CMeeting_Base::IsSetPlace(), CMeeting_Base::SetDate(), CMeeting_Base::SetPlace(), x_BasicCleanupAffil(), and x_BasicCleanupDate().

Referenced by x_BasicCleanupCitProc().

x_BasicCleanupModelEvidenceSupport()

void CAutogeneratedCleanup::x_BasicCleanupModelEvidenceSupport ( CModelEvidenceSupport &  arg0 )

private

Definition at line 1736 of file autogenerated_cleanup.cpp.

References CModelEvidenceSupport_Base::IsSetEst(), CModelEvidenceSupport_Base::IsSetIdentification(), CModelEvidenceSupport_Base::IsSetMrna(), CModelEvidenceSupport_Base::IsSetProtein(), CModelEvidenceSupport_Base::SetEst(), CModelEvidenceSupport_Base::SetIdentification(), CModelEvidenceSupport_Base::SetMrna(), CModelEvidenceSupport_Base::SetProtein(), x_BasicCleanupSeqFeat_support_support_model_evidence_E_E_protein_ETC(), and x_BasicCleanupSeqId().

Referenced by x_BasicCleanupBioseq_descr_descr_E(), x_BasicCleanupBioseqSetDesc(), and x_BasicCleanupSeqFeat_support_support_model_evidence_ETC().

x_BasicCleanupMolInfo()

void CAutogeneratedCleanup::x_BasicCleanupMolInfo ( CMolInfo &  arg0 )

private

Definition at line 2282 of file autogenerated_cleanup.cpp.

References m_LastArg_BasicCleanupBioseq, m_NewCleanup, CNewCleanup_imp::MolInfoBC(), and CNewCleanup_imp::x_FixUnsetMolFromBiomol().

Referenced by x_BasicCleanupBioseq_descr_descr_E().

x_BasicCleanupNumbering()

void CAutogeneratedCleanup::x_BasicCleanupNumbering ( CNumbering &  arg0 )

private

Definition at line 1017 of file autogenerated_cleanup.cpp.

References CNumbering_Base::e_Ref, CNumbering_Base::SetRef(), CNumbering_Base::Which(), and x_BasicCleanupNumRef().

Referenced by x_BasicCleanupBioseq_descr_descr_E(), x_BasicCleanupBioseqSetDesc(), x_BasicCleanupSeqFeat_data(), x_BasicCleanupSeqFeat_data_data_pub_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_ETC(), and x_BasicCleanupSeqFeatXrefPub().

x_BasicCleanupNumRef()

void CAutogeneratedCleanup::x_BasicCleanupNumRef ( CNum_ref &  arg0 )

private

Definition at line 1010 of file autogenerated_cleanup.cpp.

References CNum_ref_Base::IsSetAligns(), CNum_ref_Base::SetAligns(), and x_BasicCleanupSeqAlign().

Referenced by x_BasicCleanupNumbering().

x_BasicCleanupOrgNameName()

void CAutogeneratedCleanup::x_BasicCleanupOrgNameName ( COrgName::C_Name &  arg0 )

private

Definition at line 711 of file autogenerated_cleanup.cpp.

References COrgName_Base::C_Name::e_Hybrid, COrgName_Base::C_Name::SetHybrid(), COrgName_Base::C_Name::Which(), and x_BasicCleanupOrgNameName_hybrid().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org_org_orgname_E1798_ETC(), and x_BasicCleanupSeqFeatDataOrgName().

x_BasicCleanupOrgNameName_hybrid()

void CAutogeneratedCleanup::x_BasicCleanupOrgNameName_hybrid ( CMultiOrgName &  arg0 )

private

Definition at line 704 of file autogenerated_cleanup.cpp.

References CMultiOrgName_Base::IsSet(), CMultiOrgName_Base::Set(), and x_BasicCleanupOrgNameName_hybrid_hybrid().

Referenced by x_BasicCleanupOrgNameName().

x_BasicCleanupOrgNameName_hybrid_hybrid()

template<typename Tcontainer_ncbi_cref_corgname_ >

void CAutogeneratedCleanup::x_BasicCleanupOrgNameName_hybrid_hybrid ( Tcontainer_ncbi_cref_corgname_ &  arg0 )

private

Definition at line 697 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupOrgNameName_hybrid_hybrid_E().

Referenced by x_BasicCleanupOrgNameName_hybrid().

x_BasicCleanupOrgNameName_hybrid_hybrid_E()

void CAutogeneratedCleanup::x_BasicCleanupOrgNameName_hybrid_hybrid_E ( COrgName &  arg0 )

private

Definition at line 691 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org_org_orgname_E1798_ETC().

Referenced by x_BasicCleanupOrgNameName_hybrid_hybrid().

x_BasicCleanupOrgRef()

void CAutogeneratedCleanup::x_BasicCleanupOrgRef ( COrg_ref &  arg0, bool  inBioSource  )

private

Definition at line 1030 of file autogenerated_cleanup.cpp.

References CLEAN_AND_COMPRESS_STRING_MEMBER, CLEAN_STRING_LIST, COrg_ref_Base::IsSetCommon(), COrg_ref_Base::IsSetDb(), COrg_ref_Base::IsSetMod(), COrg_ref_Base::IsSetOrgname(), m_NewCleanup, m_pCurrentSeqFeat, CNewCleanup_imp::OrgrefBC(), COrg_ref_Base::SetCommon(), COrg_ref_Base::SetDb(), COrg_ref_Base::SetMod(), COrg_ref_Base::SetOrgname(), x_BasicCleanupOrgRefMod(), x_BasicCleanupSeqFeat_dbxref_ETC(), x_BasicCleanupSeqFeatDataOrgName(), CNewCleanup_imp::x_GBQualToOrgRef(), CNewCleanup_imp::x_PostOrgRef(), and CNewCleanup_imp::x_TrimInternalSemicolonsMarkChanged().

Referenced by x_BasicCleanupSeqFeat_data(), and x_BasicCleanupSeqFeat_data_data_biosrc_biosrc().

x_BasicCleanupOrgRefMod()

template<typename Tcontainer_std_string_ >

void CAutogeneratedCleanup::x_BasicCleanupOrgRefMod ( Tcontainer_std_string_ &  arg0 )

private

Definition at line 672 of file autogenerated_cleanup.cpp.

References m_NewCleanup, NON_CONST_ITERATE, and CNewCleanup_imp::OrgrefModBC().

Referenced by x_BasicCleanupOrgRef(), x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_txorg_ETC().

x_BasicCleanupPackedPoint()

void CAutogeneratedCleanup::x_BasicCleanupPackedPoint ( CPacked_seqpnt &  arg0 )

private

Definition at line 120 of file autogenerated_cleanup.cpp.

References CPacked_seqpnt_Base::IsSetId(), CPacked_seqpnt_Base::SetId(), and x_BasicCleanupSeqId().

Referenced by x_BasicCleanupSeqFeat_location_ETC(), and x_BasicCleanupSeqLoc().

x_BasicCleanupPackedSeg()

void CAutogeneratedCleanup::x_BasicCleanupPackedSeg ( CPacked_seg &  arg0 )

private

Definition at line 214 of file autogenerated_cleanup.cpp.

References CPacked_seg_Base::IsSetIds(), CPacked_seg_Base::SetIds(), and x_BasicCleanupSeqIds().

Referenced by x_BasicCleanupAlignSegs().

x_BasicCleanupPackedSeqInt()

void CAutogeneratedCleanup::x_BasicCleanupPackedSeqInt ( CPacked_seqint &  arg0 )

private

Definition at line 110 of file autogenerated_cleanup.cpp.

References CPacked_seqint_Base::IsSet(), CPacked_seqint_Base::Set(), and x_BasicCleanupSeqInt().

Referenced by x_BasicCleanupSeqFeat_location_ETC(), and x_BasicCleanupSeqLoc().

x_BasicCleanupPatentPriority()

void CAutogeneratedCleanup::x_BasicCleanupPatentPriority ( CPatent_priority &  arg0 )

private

Definition at line 531 of file autogenerated_cleanup.cpp.

References CPatent_priority_Base::IsSetDate(), CPatent_priority_Base::SetDate(), and x_BasicCleanupDate().

Referenced by x_BasicCleanupCitPat().

x_BasicCleanupPDBBlock()

void CAutogeneratedCleanup::x_BasicCleanupPDBBlock ( CPDB_block &  arg0 )

private

Definition at line 2292 of file autogenerated_cleanup.cpp.

References CPDB_block_Base::IsSetDeposition(), CPDB_block_Base::IsSetReplace(), CPDB_block_Base::SetDeposition(), CPDB_block_Base::SetReplace(), and x_BasicCleanupDate().

Referenced by x_BasicCleanupBioseq_descr_descr_E(), and x_BasicCleanupBioseqSetDesc().

x_BasicCleanupPIRBlock()

void CAutogeneratedCleanup::x_BasicCleanupPIRBlock ( CPIR_block &  arg0 )

private

Definition at line 2306 of file autogenerated_cleanup.cpp.

References CPIR_block_Base::IsSetSeqref(), CPIR_block_Base::SetSeqref(), and x_BasicCleanupSeqIds().

Referenced by x_BasicCleanupBioseq_descr_descr_E(), and x_BasicCleanupBioseqSetDesc().

x_BasicCleanupProtRef()

void CAutogeneratedCleanup::x_BasicCleanupProtRef ( CProt_ref &  arg0, bool  cleanup_parent_feat  )

private

Definition at line 1097 of file autogenerated_cleanup.cpp.

References CLEAN_STRING_LIST, CProt_ref_Base::IsSetActivity(), CProt_ref_Base::IsSetDesc(), CProt_ref_Base::IsSetEc(), CProt_ref_Base::IsSetName(), m_NewCleanup, m_pCurrentSeqFeat, CNewCleanup_imp::PostProtFeatfBC(), CNewCleanup_imp::ProtFeatfBC(), CNewCleanup_imp::ProtrefBC(), CProt_ref_Base::SetActivity(), CProt_ref_Base::SetDesc(), CProt_ref_Base::SetEc(), CProt_ref_Base::SetName(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_activity_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_desc_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_ec_ETC(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_name_ETC().

Referenced by x_BasicCleanupSeqFeat_data(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_ETC(), and x_BasicCleanupSeqFeat_xref_E_E_data_ETC().

x_BasicCleanupPub()

void CAutogeneratedCleanup::x_BasicCleanupPub ( CPub &  arg0, bool  isSeqFeatCitPub = false  )

private

Definition at line 1133 of file autogenerated_cleanup.cpp.

References CPub_Base::e_Article, CPub_Base::e_Book, CPub_Base::e_Equiv, CPub_Base::e_Gen, CPub_Base::e_Journal, CPub_Base::e_Man, CPub_Base::e_Medline, CPub_Base::e_Muid, CPub_Base::e_Patent, CPub_Base::e_Proc, CPub_Base::e_Sub, m_NewCleanup, m_pCurrentSeqFeat, CPub_Base::SetArticle(), CPub_Base::SetBook(), CPub_Base::SetEquiv(), CPub_Base::SetGen(), CPub_Base::SetJournal(), CPub_Base::SetMan(), CPub_Base::SetMedline(), CPub_Base::SetPatent(), CPub_Base::SetProc(), CPub_Base::SetSub(), CPub_Base::Which(), x_BasicCleanupCitArt(), x_BasicCleanupCitBook(), x_BasicCleanupCitGen(), x_BasicCleanupCitJournal(), x_BasicCleanupCitLet(), x_BasicCleanupCitPat(), x_BasicCleanupCitProc(), x_BasicCleanupCitSub(), x_BasicCleanupMedlineEntry(), x_BasicCleanupPubEquiv(), CNewCleanup_imp::x_RememberMuidThatMightBeConvertibleToPmid(), and CNewCleanup_imp::x_RememberPubOldLabel().

Referenced by x_BasicCleanupPubEquiv(), and x_BasicCleanupSeqFeat_cit_ETC().

x_BasicCleanupPubEquiv()

void CAutogeneratedCleanup::x_BasicCleanupPubEquiv ( CPub_equiv &  arg0 )

private

Definition at line 1124 of file autogenerated_cleanup.cpp.

References CPub_equiv_Base::IsSet(), CPub_equiv_Base::Set(), and x_BasicCleanupPub().

Referenced by x_BasicCleanupPub(), x_BasicCleanupSeqFeat_data_data_pub_ETC(), and x_BasicCleanupSeqFeatXrefPub().

x_BasicCleanupPubStatusDate()

void CAutogeneratedCleanup::x_BasicCleanupPubStatusDate ( CPubStatusDate &  arg0 )

private

Definition at line 394 of file autogenerated_cleanup.cpp.

References CPubStatusDate_Base::IsSetDate(), CPubStatusDate_Base::SetDate(), and x_BasicCleanupDate().

Referenced by x_BasicCleanupPubStatusDateSet().

x_BasicCleanupPubStatusDateSet()

void CAutogeneratedCleanup::x_BasicCleanupPubStatusDateSet ( CPubStatusDateSet &  arg0 )

private

Definition at line 402 of file autogenerated_cleanup.cpp.

References CPubStatusDateSet_Base::IsSet(), CPubStatusDateSet_Base::Set(), and x_BasicCleanupPubStatusDate().

Referenced by x_BasicCleanupImprint().

x_BasicCleanupSeqAlign()

void CAutogeneratedCleanup::x_BasicCleanupSeqAlign ( CSeq_align &  arg0 )

private

Definition at line 311 of file autogenerated_cleanup.cpp.

References CSeq_align_Base::IsSetBounds(), CSeq_align_Base::IsSetSegs(), CSeq_align_Base::SetBounds(), CSeq_align_Base::SetSegs(), x_BasicCleanupAlignSegs(), and x_BasicCleanupSeqLocs().

Referenced by x_BasicCleanupNumRef(), x_BasicCleanupSeqAligns(), and x_BasicCleanupSeqAlignSet().

x_BasicCleanupSeqAligns()

template<typename TSeqAlignContainer >

void CAutogeneratedCleanup::x_BasicCleanupSeqAligns ( TSeqAlignContainer &  aligns )

private

Definition at line 323 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqAlign().

Referenced by x_BasicCleanupSeqAnnotData(), and x_BasicCleanupSeqHist().

x_BasicCleanupSeqAlignSet()

void CAutogeneratedCleanup::x_BasicCleanupSeqAlignSet ( CSeq_align_set &  arg0 )

private

Definition at line 205 of file autogenerated_cleanup.cpp.

References CSeq_align_set_Base::IsSet(), CSeq_align_set_Base::Set(), and x_BasicCleanupSeqAlign().

Referenced by x_BasicCleanupAlignSegs().

x_BasicCleanupSeqAnnotData()

void CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData ( CSeq_annot::C_Data &  arg0 )

private

Definition at line 2157 of file autogenerated_cleanup.cpp.

References CSeq_annot_Base::C_Data::e_Align, CSeq_annot_Base::C_Data::e_Ftable, CSeq_annot_Base::C_Data::e_Graph, CSeq_annot_Base::C_Data::e_Ids, CSeq_annot_Base::C_Data::e_Locs, CSeq_annot_Base::C_Data::e_Seq_table, CSeq_annot_Base::C_Data::SetAlign(), CSeq_annot_Base::C_Data::SetFtable(), CSeq_annot_Base::C_Data::SetGraph(), CSeq_annot_Base::C_Data::SetIds(), CSeq_annot_Base::C_Data::SetLocs(), CSeq_annot_Base::C_Data::SetSeq_table(), CSeq_annot_Base::C_Data::Which(), x_BasicCleanupSeqAligns(), x_BasicCleanupSeqAnnotGraph(), x_BasicCleanupSeqFeats(), x_BasicCleanupSeqIds(), x_BasicCleanupSeqLocs(), and x_BasicCleanupSeqTable().

Referenced by BasicCleanupSeqAnnot(), and x_BasicCleanupSeqSubmit_data_annots_E().

x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data1712_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data1712_ETC ( CSeqTable_multi_data &  arg0 )

private

Definition at line 2074 of file autogenerated_cleanup.cpp.

References CSeqTable_multi_data_Base::e_Id, CSeqTable_multi_data_Base::e_Int_delta, CSeqTable_multi_data_Base::e_Int_scaled, CSeqTable_multi_data_Base::e_Interval, CSeqTable_multi_data_Base::e_Loc, CSeqTable_multi_data_Base::e_Real_scaled, CSeqTable_multi_data_Base::SetId(), CSeqTable_multi_data_Base::SetInt_delta(), CSeqTable_multi_data_Base::SetInt_scaled(), CSeqTable_multi_data_Base::SetInterval(), CSeqTable_multi_data_Base::SetLoc(), CSeqTable_multi_data_Base::SetReal_scaled(), CSeqTable_multi_data_Base::Which(), x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_delta(), x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_scaled(), x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_real_scaled(), x_BasicCleanupSeqIds(), x_BasicCleanupSeqInts(), and x_BasicCleanupSeqLocs().

Referenced by x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_scaled_int_scaled_data(), x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_real_scaled_real_scaled_data(), and x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_ETC().

x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_delta()

void CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_delta ( CSeqTable_multi_data &  arg0 )

private

Definition at line 2069 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_int_delta1713_ETC().

Referenced by x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data1712_ETC(), and x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_int_delta1713_ETC().

x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_scaled()

void CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_scaled ( CScaled_int_multi_data &  arg0 )

private

Definition at line 2021 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_scaled_int_scaled().

Referenced by x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data1712_ETC(), and x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_int_delta1713_ETC().

x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_scaled_int_scaled()

void CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_scaled_int_scaled ( CScaled_int_multi_data &  arg0 )

private

Definition at line 2014 of file autogenerated_cleanup.cpp.

References CScaled_int_multi_data_Base::IsSetData(), CScaled_int_multi_data_Base::SetData(), and x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_scaled_int_scaled_data().

Referenced by x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_scaled().

x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_scaled_int_scaled_data()

void CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_scaled_int_scaled_data ( CSeqTable_multi_data &  arg0 )

private

Definition at line 2009 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data1712_ETC().

Referenced by x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_scaled_int_scaled().

x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_real_scaled()

void CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_real_scaled ( CScaled_real_multi_data &  arg0 )

private

Definition at line 2038 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_real_scaled_real_scaled().

Referenced by x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data1712_ETC(), and x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_int_delta1713_ETC().

x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_real_scaled_real_scaled()

void CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_real_scaled_real_scaled ( CScaled_real_multi_data &  arg0 )

private

Definition at line 2031 of file autogenerated_cleanup.cpp.

References CScaled_real_multi_data_Base::IsSetData(), CScaled_real_multi_data_Base::SetData(), and x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_real_scaled_real_scaled_data().

Referenced by x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_real_scaled().

x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_real_scaled_real_scaled_data()

void CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_real_scaled_real_scaled_data ( CSeqTable_multi_data &  arg0 )

private

Definition at line 2026 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data1712_ETC().

Referenced by x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_real_scaled_real_scaled().

x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_ETC ( CSeqTable_multi_data &  arg0 )

private

Definition at line 2100 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data1712_ETC().

Referenced by x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_ETC().

x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_int_delta1713_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_int_delta1713_ETC ( CSeqTable_multi_data &  arg0 )

private

Definition at line 2043 of file autogenerated_cleanup.cpp.

References CSeqTable_multi_data_Base::e_Id, CSeqTable_multi_data_Base::e_Int_delta, CSeqTable_multi_data_Base::e_Int_scaled, CSeqTable_multi_data_Base::e_Interval, CSeqTable_multi_data_Base::e_Loc, CSeqTable_multi_data_Base::e_Real_scaled, CSeqTable_multi_data_Base::SetId(), CSeqTable_multi_data_Base::SetInt_delta(), CSeqTable_multi_data_Base::SetInt_scaled(), CSeqTable_multi_data_Base::SetInterval(), CSeqTable_multi_data_Base::SetLoc(), CSeqTable_multi_data_Base::SetReal_scaled(), CSeqTable_multi_data_Base::Which(), x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_delta(), x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_scaled(), x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_real_scaled(), x_BasicCleanupSeqIds(), x_BasicCleanupSeqInts(), and x_BasicCleanupSeqLocs().

Referenced by x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data_int_delta().

x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_sparse_other_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_sparse_other_ETC ( CSeqTable_single_data &  arg0 )

private

Definition at line 2122 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_sparse_other_sparse_other_ETC().

Referenced by x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_ETC().

x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_sparse_other_sparse_other_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_sparse_other_sparse_other_ETC ( CSeqTable_single_data &  arg0 )

private

Definition at line 2105 of file autogenerated_cleanup.cpp.

References CSeqTable_single_data_Base::e_Id, CSeqTable_single_data_Base::e_Interval, CSeqTable_single_data_Base::e_Loc, CSeqTable_single_data_Base::SetId(), CSeqTable_single_data_Base::SetInterval(), CSeqTable_single_data_Base::SetLoc(), CSeqTable_single_data_Base::Which(), x_BasicCleanupSeqId(), x_BasicCleanupSeqInt(), and x_BasicCleanupSeqLoc().

Referenced by x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_sparse_other_ETC().

x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_ETC ( CSeqTable_column &  arg0 )

private

Definition at line 2127 of file autogenerated_cleanup.cpp.

References CSeqTable_column_Base::IsSetData(), CSeqTable_column_Base::IsSetDefault(), CSeqTable_column_Base::IsSetSparse_other(), CSeqTable_column_Base::SetData(), CSeqTable_column_Base::SetDefault(), CSeqTable_column_Base::SetSparse_other(), x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_ETC(), and x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_sparse_other_ETC().

Referenced by x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_ETC().

x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_ETC()

template<typename Tcontainer_ncbi_cref_cseqtable_column_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_ETC ( Tcontainer_ncbi_cref_cseqtable_column_ &  arg0 )

private

Definition at line 2142 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_ETC().

Referenced by x_BasicCleanupSeqTable().

x_BasicCleanupSeqAnnotGraph()

template<typename Tcontainer_ncbi_cref_cseq_graph_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqAnnotGraph ( Tcontainer_ncbi_cref_cseq_graph_ &  arg0 )

private

Definition at line 2002 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqGraph().

Referenced by x_BasicCleanupSeqAnnotData().

x_BasicCleanupSeqAnnots()

template<typename Tcontainer_ncbi_cref_cseq_annot_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqAnnots ( Tcontainer_ncbi_cref_cseq_annot_ &  arg0 )

private

Definition at line 2546 of file autogenerated_cleanup.cpp.

References BasicCleanupSeqAnnot(), and NON_CONST_ITERATE.

Referenced by BasicCleanupBioseqSet(), and x_BasicCleanupSeqEntry_set().

x_BasicCleanupSeqBond()

void CAutogeneratedCleanup::x_BasicCleanupSeqBond ( CSeq_bond &  seq_bond )

private

Definition at line 68 of file autogenerated_cleanup.cpp.

References CSeq_bond_Base::IsSetA(), CSeq_bond_Base::IsSetB(), CSeq_bond_Base::SetA(), CSeq_bond_Base::SetB(), and x_BasicCleanupSeqPoint().

Referenced by x_BasicCleanupSeqFeat_location_ETC(), and x_BasicCleanupSeqLoc().

x_BasicCleanupSeqEntry_set()

void CAutogeneratedCleanup::x_BasicCleanupSeqEntry_set ( CBioseq_set &  arg0 )

private

Definition at line 2627 of file autogenerated_cleanup.cpp.

References BasicCleanupSeqEntry(), CBioseq_set_Base::IsSetAnnot(), CBioseq_set_Base::IsSetDate(), CBioseq_set_Base::IsSetDescr(), CBioseq_set_Base::IsSetSeq_set(), m_NewCleanup, CNewCleanup_imp::SeqsetBC(), CBioseq_set_Base::SetAnnot(), CBioseq_set_Base::SetDate(), CBioseq_set_Base::SetDescr(), CBioseq_set_Base::SetSeq_set(), x_BasicCleanupBioseqSet_descr_ETC(), x_BasicCleanupDate(), x_BasicCleanupSeqAnnots(), and CNewCleanup_imp::x_ClearEmptyDescr().

Referenced by BasicCleanupSeqEntry().

x_BasicCleanupSeqExt()

void CAutogeneratedCleanup::x_BasicCleanupSeqExt ( CSeq_ext &  arg0 )

private

Definition at line 2445 of file autogenerated_cleanup.cpp.

References CSeq_ext_Base::e_Delta, CSeq_ext_Base::e_Map, CSeq_ext_Base::e_Ref, CSeq_ext_Base::e_Seg, CSeq_ext_Base::SetDelta(), CSeq_ext_Base::SetMap(), CSeq_ext_Base::SetRef(), CSeq_ext_Base::SetSeg(), CSeq_ext_Base::Which(), x_BasicCleanupBioseq_inst_inst_ext_ext_map(), x_BasicCleanupBioseqSet_seq_set_E_E_seq_seq_inst_inst_ext_ext_seg_ETC(), x_BasicCleanupDeltaExt(), and x_BasicCleanupSeqLoc().

Referenced by x_BasicCleanupBioseq_inst().

x_BasicCleanupSeqFeat_cit_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_cit_ETC ( CPub_set &  arg0 )

private

Definition at line 606 of file autogenerated_cleanup.cpp.

References CPub_set_Base::e_Article, CPub_set_Base::e_Book, CPub_set_Base::e_Journal, CPub_set_Base::e_Medline, CPub_set_Base::e_Patent, CPub_set_Base::e_Proc, CPub_set_Base::e_Pub, m_NewCleanup, CPub_set_Base::SetArticle(), CPub_set_Base::SetBook(), CPub_set_Base::SetJournal(), CPub_set_Base::SetMedline(), CPub_set_Base::SetPatent(), CPub_set_Base::SetProc(), CPub_set_Base::SetPub(), CPub_set_Base::Which(), x_BasicCleanupCitArt(), x_BasicCleanupCitBook(), x_BasicCleanupCitJournal(), x_BasicCleanupCitPat(), x_BasicCleanupCitProc(), x_BasicCleanupMedlineEntry(), x_BasicCleanupPub(), and CNewCleanup_imp::x_RememberSeqFeatCitPubs().

Referenced by BasicCleanupSeqFeat().

x_BasicCleanupSeqFeat_comment()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_comment ( std::string &  arg0 )

private

Definition at line 654 of file autogenerated_cleanup.cpp.

References m_NewCleanup, CNewCleanup_imp::x_ConvertDoubleQuotesMarkChanged(), CNewCleanup_imp::x_DecodeXMLMarkChanged(), and CNewCleanup_imp::x_FixUpEllipsis().

Referenced by BasicCleanupSeqFeat().

x_BasicCleanupSeqFeat_data()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_data ( CSeqFeatData &  arg0 )

private

Definition at line 1575 of file autogenerated_cleanup.cpp.

References CSeqFeatData_Base::e_Biosrc, CSeqFeatData_Base::e_Cdregion, CSeqFeatData_Base::e_Clone, CSeqFeatData_Base::e_Gene, CSeqFeatData_Base::e_Imp, CSeqFeatData_Base::e_Num, CSeqFeatData_Base::e_Org, CSeqFeatData_Base::e_Prot, CSeqFeatData_Base::e_Pub, CSeqFeatData_Base::e_Region, CSeqFeatData_Base::e_Rna, CSeqFeatData_Base::e_Seq, CSeqFeatData_Base::e_Site, CSeqFeatData_Base::e_Txinit, CSeqFeatData_Base::e_User, CSeqFeatData_Base::e_Variation, CSeqFeatData::SetBiosrc(), CSeqFeatData::SetCdregion(), CSeqFeatData::SetClone(), CSeqFeatData::SetGene(), CSeqFeatData::SetImp(), CSeqFeatData::SetNum(), CSeqFeatData::SetOrg(), CSeqFeatData::SetProt(), CSeqFeatData::SetPub(), CSeqFeatData::SetRegion(), CSeqFeatData::SetRna(), CSeqFeatData::SetSeq(), CSeqFeatData::SetSite(), CSeqFeatData::SetTxinit(), CSeqFeatData::SetUser(), CSeqFeatData::SetVariation(), CSeqFeatData_Base::Which(), x_BasicCleanupGeneRef(), x_BasicCleanupNumbering(), x_BasicCleanupOrgRef(), x_BasicCleanupProtRef(), x_BasicCleanupSeqFeat_data_data_biosrc(), x_BasicCleanupSeqFeat_data_data_cdregion(), x_BasicCleanupSeqFeat_data_data_pub_ETC(), x_BasicCleanupSeqFeat_data_data_region_ETC(), x_BasicCleanupSeqFeat_data_data_rna(), x_BasicCleanupSeqFeat_data_data_site(), x_BasicCleanupSeqFeat_ext_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_imp_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_ETC(), and x_BasicCleanupSeqLoc().

Referenced by BasicCleanupSeqFeat().

x_BasicCleanupSeqFeat_data_data_biosrc()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_data_data_biosrc ( CBioSource &  arg0 )

private

Definition at line 854 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_data_data_biosrc_biosrc().

Referenced by x_BasicCleanupSeqFeat_data().

x_BasicCleanupSeqFeat_data_data_biosrc_biosrc()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_data_data_biosrc_biosrc ( CBioSource &  arg0 )

private

Definition at line 832 of file autogenerated_cleanup.cpp.

References CNewCleanup_imp::BiosourceBC(), CNewCleanup_imp::BiosourceFeatBC(), CBioSource_Base::IsSetOrg(), CBioSource_Base::IsSetPcr_primers(), CBioSource_Base::IsSetSubtype(), m_NewCleanup, m_pCurrentBioSource, m_pCurrentSeqFeat, CBioSource_Base::SetOrg(), CBioSource_Base::SetPcr_primers(), CBioSource_Base::SetSubtype(), x_BasicCleanupOrgRef(), x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_pcr_primers_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_subtype_ETC(), CNewCleanup_imp::x_ModernizePCRPrimers(), and CNewCleanup_imp::x_PostBiosource().

Referenced by x_BasicCleanupSeqFeat_data_data_biosrc().

x_BasicCleanupSeqFeat_data_data_cdregion()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_data_data_cdregion ( CCdregion &  arg0 )

private

Definition at line 888 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_data_data_cdregion_cdregion().

Referenced by x_BasicCleanupSeqFeat_data().

x_BasicCleanupSeqFeat_data_data_cdregion_cdregion()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_data_data_cdregion_cdregion ( CCdregion &  arg0 )

private

Definition at line 880 of file autogenerated_cleanup.cpp.

References CNewCleanup_imp::CdregionFeatBC(), CCdregion_Base::IsSetCode_break(), m_NewCleanup, m_pCurrentSeqFeat, CCdregion_Base::SetCode_break(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_cdregion_code_break_ETC().

Referenced by x_BasicCleanupSeqFeat_data_data_cdregion().

x_BasicCleanupSeqFeat_data_data_pub_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_data_data_pub_ETC ( CPubdesc &  arg0 )

private

Definition at line 1178 of file autogenerated_cleanup.cpp.

References CPubdesc_Base::IsSetComment(), CPubdesc_Base::IsSetNum(), CPubdesc_Base::IsSetPub(), m_NewCleanup, CNewCleanup_imp::PubdescBC(), CPubdesc_Base::SetComment(), CPubdesc_Base::SetNum(), CPubdesc_Base::SetPub(), x_BasicCleanupNumbering(), x_BasicCleanupPubEquiv(), CNewCleanup_imp::x_ConvertDoubleQuotesMarkChanged(), and CNewCleanup_imp::x_NotePubdescOrAnnotPubs().

Referenced by x_BasicCleanupBioseq_descr_descr_E(), x_BasicCleanupBioseqSetDesc(), and x_BasicCleanupSeqFeat_data().

x_BasicCleanupSeqFeat_data_data_region_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_data_data_region_ETC ( std::string &  arg0 )

private

Definition at line 1194 of file autogenerated_cleanup.cpp.

References m_NewCleanup, CNewCleanup_imp::x_CleanupStringMarkChanged(), CNewCleanup_imp::x_CompressStringSpacesMarkChanged(), CNewCleanup_imp::x_ConvertDoubleQuotesMarkChanged(), and CNewCleanup_imp::x_TrimInternalSemicolonsMarkChanged().

Referenced by x_BasicCleanupSeqFeat_data().

x_BasicCleanupSeqFeat_data_data_rna()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_data_data_rna ( CRNA_ref &  arg0 )

private

Definition at line 1298 of file autogenerated_cleanup.cpp.

References CRNA_ref_Base::IsSetExt(), m_NewCleanup, m_pCurrentSeqFeat, CNewCleanup_imp::RnaFeatBC(), CNewCleanup_imp::RnarefBC(), CRNA_ref_Base::SetExt(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_ETC().

Referenced by x_BasicCleanupSeqFeat_data().

x_BasicCleanupSeqFeat_data_data_rna_rna()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_data_data_rna_rna ( CRNA_ref &  arg0 )

private

x_BasicCleanupSeqFeat_data_data_site()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_data_data_site ( CSeqFeatData::ESite &  arg0 )

private

Definition at line 1308 of file autogenerated_cleanup.cpp.

References m_NewCleanup, m_pCurrentSeqFeat, and CNewCleanup_imp::SiteFeatBC().

Referenced by x_BasicCleanupSeqFeat_data().

x_BasicCleanupSeqFeat_dbxref_ETC()

template<typename Tcontainer_ncbi_cref_cdbtag_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_dbxref_ETC ( Tcontainer_ncbi_cref_cdbtag_ &  arg0 )

private

Definition at line 663 of file autogenerated_cleanup.cpp.

References CNewCleanup_imp::DbtagBC(), m_NewCleanup, and NON_CONST_ITERATE.

Referenced by BasicCleanupSeqFeat(), x_BasicCleanupOrgRef(), x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_txorg_ETC().

x_BasicCleanupSeqFeat_ext_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_ext_ETC ( CUser_object &  arg0 )

private

Definition at line 1421 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_ext_ext1769_ETC().

Referenced by BasicCleanupSeqFeat(), x_BasicCleanupBioseq_descr_descr_E(), x_BasicCleanupBioseqSetDesc(), and x_BasicCleanupSeqFeat_data().

x_BasicCleanupSeqFeat_ext_ext1769_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_ext_ext1769_ETC ( CUser_object &  arg0 )

private

Definition at line 1416 of file autogenerated_cleanup.cpp.

References m_NewCleanup, and CNewCleanup_imp::UserObjectBC().

Referenced by x_BasicCleanupSeqFeat_ext_ETC().

x_BasicCleanupSeqFeat_location_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_location_ETC ( CSeq_loc &  arg0 )

private

Definition at line 1645 of file autogenerated_cleanup.cpp.

References CNewCleanup_imp::ConvertSeqLocWholeToInt(), CSeq_loc_Base::e_Bond, CSeq_loc_Base::e_Empty, CSeq_loc_Base::e_Equiv, CSeq_loc_Base::e_Int, CSeq_loc_Base::e_Mix, CSeq_loc_Base::e_Packed_int, CSeq_loc_Base::e_Packed_pnt, CSeq_loc_Base::e_Pnt, CSeq_loc_Base::e_Whole, m_NewCleanup, CNewCleanup_imp::SeqLocBC(), CSeq_loc::SetBond(), CSeq_loc::SetEmpty(), CSeq_loc::SetEquiv(), CSeq_loc::SetInt(), CSeq_loc::SetMix(), CSeq_loc::SetPacked_int(), CSeq_loc::SetPacked_pnt(), CSeq_loc::SetPnt(), CSeq_loc::SetWhole(), CSeq_loc_Base::Which(), x_BasicCleanupPackedPoint(), x_BasicCleanupPackedSeqInt(), x_BasicCleanupSeqBond(), x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_location_location_equiv_ETC(), x_BasicCleanupSeqId(), x_BasicCleanupSeqInt(), x_BasicCleanupSeqLocMix(), and x_BasicCleanupSeqPoint().

Referenced by BasicCleanupSeqFeat().

x_BasicCleanupSeqFeat_qual_ETC()

template<typename Tcontainer_ncbi_cref_cgb_qual_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_qual_ETC ( Tcontainer_ncbi_cref_cgb_qual_ &  arg0 )

private

Definition at line 1683 of file autogenerated_cleanup.cpp.

References m_NewCleanup, and CNewCleanup_imp::x_ExpandCombinedQuals().

Referenced by BasicCleanupSeqFeat().

x_BasicCleanupSeqFeat_support_support_inference_E_E_basis_basis_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_support_support_inference_E_E_basis_basis_ETC ( CEvidenceBasis &  arg0 )

private

Definition at line 1688 of file autogenerated_cleanup.cpp.

References CEvidenceBasis_Base::IsSetAccessions(), CEvidenceBasis_Base::SetAccessions(), and x_BasicCleanupSeqIds().

Referenced by x_BasicCleanupSeqFeat_support_support_inference_E_E_basis_ETC().

x_BasicCleanupSeqFeat_support_support_inference_E_E_basis_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_support_support_inference_E_E_basis_ETC ( CEvidenceBasis &  arg0 )

private

Definition at line 1695 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_support_support_inference_E_E_basis_basis_ETC().

Referenced by x_BasicCleanupSeqFeat_support_support_inference_E_E_ETC().

x_BasicCleanupSeqFeat_support_support_inference_E_E_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_support_support_inference_E_E_ETC ( CInferenceSupport &  arg0 )

private

Definition at line 1700 of file autogenerated_cleanup.cpp.

References CInferenceSupport_Base::IsSetBasis(), CInferenceSupport_Base::SetBasis(), and x_BasicCleanupSeqFeat_support_support_inference_E_E_basis_ETC().

Referenced by x_BasicCleanupSeqFeat_support_support_inference_E_ETC().

x_BasicCleanupSeqFeat_support_support_inference_E_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_support_support_inference_E_ETC ( CInferenceSupport &  arg0 )

private

Definition at line 1707 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_support_support_inference_E_E_ETC().

Referenced by x_BasicCleanupSeqFeat_support_support_inference_ETC().

x_BasicCleanupSeqFeat_support_support_inference_ETC()

template<typename Tcontainer_ncbi_cref_cinferencesupport_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_support_support_inference_ETC ( Tcontainer_ncbi_cref_cinferencesupport_ &  arg0 )

private

Definition at line 1713 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqFeat_support_support_inference_E_ETC().

Referenced by x_BasicCleanupSeqFeatSupport().

x_BasicCleanupSeqFeat_support_support_model_evidence_E_E_protein_E_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_support_support_model_evidence_E_E_protein_E_ETC ( CModelEvidenceItem &  arg0 )

private

Definition at line 1720 of file autogenerated_cleanup.cpp.

References CModelEvidenceItem_Base::IsSetId(), CModelEvidenceItem_Base::SetId(), and x_BasicCleanupSeqId().

Referenced by x_BasicCleanupSeqFeat_support_support_model_evidence_E_E_protein_ETC().

x_BasicCleanupSeqFeat_support_support_model_evidence_E_E_protein_ETC()

template<typename Tcontainer_ncbi_cref_cmodelevidenceitem_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_support_support_model_evidence_E_E_protein_ETC ( Tcontainer_ncbi_cref_cmodelevidenceitem_ &  arg0 )

private

Definition at line 1729 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqFeat_support_support_model_evidence_E_E_protein_E_ETC().

Referenced by x_BasicCleanupModelEvidenceSupport().

x_BasicCleanupSeqFeat_support_support_model_evidence_ETC()

template<typename Tcontainer_ncbi_cref_cmodelevidencesupport_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_support_support_model_evidence_ETC ( Tcontainer_ncbi_cref_cmodelevidencesupport_ &  arg0 )

private

Definition at line 1754 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupModelEvidenceSupport().

Referenced by x_BasicCleanupSeqFeatSupport().

x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org ( COrg_ref &  arg0 )

private

Definition at line 1772 of file autogenerated_cleanup.cpp.

References CLEAN_AND_COMPRESS_STRING_MEMBER, CLEAN_STRING_LIST, COrg_ref_Base::IsSetCommon(), COrg_ref_Base::IsSetDb(), COrg_ref_Base::IsSetMod(), COrg_ref_Base::IsSetOrgname(), m_NewCleanup, CNewCleanup_imp::OrgrefBC(), COrg_ref_Base::SetCommon(), COrg_ref_Base::SetDb(), COrg_ref_Base::SetMod(), COrg_ref_Base::SetOrgname(), x_BasicCleanupOrgRefMod(), x_BasicCleanupSeqFeat_dbxref_ETC(), x_BasicCleanupSeqFeatDataOrgName(), CNewCleanup_imp::x_PostOrgRef(), and CNewCleanup_imp::x_TrimInternalSemicolonsMarkChanged().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org_org_orgname_E1798_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org_org_orgname_E1798_ETC ( COrgName &  arg0 )

private

Definition at line 722 of file autogenerated_cleanup.cpp.

References CLEAN_STRING_MEMBER, COrgName_Base::IsSetMod(), COrgName_Base::IsSetName(), COrgName_Base::SetMod(), COrgName_Base::SetName(), x_BasicCleanupOrgNameName(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org_org_orgname_orgname_mod_ETC().

Referenced by x_BasicCleanupOrgNameName_hybrid_hybrid_E().

x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org_org_orgname_orgname_mod_ETC()

template<typename Tcontainer_ncbi_cref_corgmod_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org_org_orgname_orgname_mod_ETC ( Tcontainer_ncbi_cref_corgmod_ &  arg0 )

private

Definition at line 681 of file autogenerated_cleanup.cpp.

References CLEAN_AND_COMPRESS_STRING_MEMBER, CLEAN_AND_COMPRESS_STRING_MEMBER_JUNK, m_NewCleanup, NON_CONST_ITERATE, and CNewCleanup_imp::x_OrgModBC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org_org_orgname_E1798_ETC(), and x_BasicCleanupSeqFeatDataOrgName().

x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_pcr_primers_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_pcr_primers_ETC ( CPCRReactionSet &  arg0 )

private

Definition at line 809 of file autogenerated_cleanup.cpp.

References m_NewCleanup, and CNewCleanup_imp::PCRReactionSetBC().

Referenced by x_BasicCleanupSeqFeat_data_data_biosrc_biosrc(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_subtype_ETC()

template<typename Tcontainer_ncbi_cref_csubsource_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_subtype_ETC ( Tcontainer_ncbi_cref_csubsource_ &  arg0 )

private

Definition at line 825 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_E_source_ETC().

Referenced by x_BasicCleanupSeqFeat_data_data_biosrc_biosrc(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_ETC ( CBioSource &  arg0 )

private

Definition at line 1795 of file autogenerated_cleanup.cpp.

References CNewCleanup_imp::BiosourceBC(), CBioSource_Base::IsSetOrg(), CBioSource_Base::IsSetPcr_primers(), CBioSource_Base::IsSetSubtype(), m_NewCleanup, m_pCurrentBioSource, CBioSource_Base::SetOrg(), CBioSource_Base::SetPcr_primers(), CBioSource_Base::SetSubtype(), x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org(), x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_pcr_primers_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_subtype_ETC(), CNewCleanup_imp::x_ModernizePCRPrimers(), and CNewCleanup_imp::x_PostBiosource().

Referenced by x_BasicCleanupBioseq_descr_descr_E(), x_BasicCleanupBioseqSetDesc(), and x_BasicCleanupSeqFeat_xref_E_E_data_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_cdregion_code_break_E_E_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_cdregion_code_break_E_E_ETC ( CCode_break &  arg0 )

private

Definition at line 860 of file autogenerated_cleanup.cpp.

References CCode_break_Base::IsSetLoc(), CCode_break_Base::SetLoc(), and x_BasicCleanupSeqLoc().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_cdregion_code_break_E_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_cdregion_code_break_E_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_cdregion_code_break_E_ETC ( CCode_break &  arg0 )

private

Definition at line 867 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_cdregion_code_break_E_E_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_cdregion_code_break_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_cdregion_code_break_ETC()

template<typename Tcontainer_ncbi_cref_ccode_break_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_cdregion_code_break_ETC ( Tcontainer_ncbi_cref_ccode_break_ &  arg0 )

private

Definition at line 873 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_cdregion_code_break_E_ETC().

Referenced by x_BasicCleanupSeqFeat_data_data_cdregion_cdregion(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_ETC ( CCdregion &  arg0 )

private

Definition at line 1816 of file autogenerated_cleanup.cpp.

References CCdregion_Base::IsSetCode_break(), CCdregion_Base::SetCode_break(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_cdregion_code_break_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_clone_seq_E_E_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_clone_seq_E_E_ETC ( CClone_seq &  arg0 )

private

Definition at line 893 of file autogenerated_cleanup.cpp.

References CClone_seq_Base::IsSetLocation(), CClone_seq_Base::IsSetSeq(), CClone_seq_Base::SetLocation(), CClone_seq_Base::SetSeq(), and x_BasicCleanupSeqLoc().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_clone_seq_E_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_clone_seq_E_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_clone_seq_E_ETC ( CClone_seq &  arg0 )

private

Definition at line 903 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_clone_seq_E_E_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_clone_seq_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_clone_seq_ETC()

template<typename Tcontainer_ncbi_cref_cclone_seq_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_clone_seq_ETC ( Tcontainer_ncbi_cref_cclone_seq_ &  arg0 )

private

Definition at line 909 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_clone_seq_E_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_ETC ( CClone_seq_set &  arg0 )

private

Definition at line 916 of file autogenerated_cleanup.cpp.

References CClone_seq_set_Base::IsSet(), CClone_seq_set_Base::Set(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_clone_seq_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_ETC ( CClone_ref &  arg0 )

private

Definition at line 923 of file autogenerated_cleanup.cpp.

References CClone_ref_Base::IsSetClone_seq(), CClone_ref_Base::SetClone_seq(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_ETC ( CClone_ref &  arg0 )

private

Definition at line 930 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_ETC().

Referenced by x_BasicCleanupSeqFeat_data(), and x_BasicCleanupSeqFeat_xref_E_E_data_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_ETC ( CSeqFeatData &  arg0 )

private

x_BasicCleanupSeqFeat_xref_E_E_data_data_imp_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_imp_ETC ( CImp_feat &  arg0 )

private

Definition at line 1004 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_imp_imp_ETC().

Referenced by x_BasicCleanupSeqFeat_data(), and x_BasicCleanupSeqFeat_xref_E_E_data_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_imp_imp_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_imp_imp_ETC ( CImp_feat &  arg0 )

private

Definition at line 997 of file autogenerated_cleanup.cpp.

References CLEAN_STRING_MEMBER.

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_imp_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_pub_pub_pub_pub1778_ETC()

template<typename Tcontainer_ncbi_cref_cpub_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_pub_pub_pub_pub1778_ETC ( Tcontainer_ncbi_cref_cpub_ &  arg0 )

private

x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_ETC ( CRNA_ref &  arg0 )

private

Definition at line 1840 of file autogenerated_cleanup.cpp.

References CRNA_ref_Base::IsSetExt(), m_NewCleanup, CNewCleanup_imp::RnarefBC(), CRNA_ref_Base::SetExt(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_ETC ( CRNA_ref::C_Ext &  arg0 )

private

Definition at line 1281 of file autogenerated_cleanup.cpp.

References CRNA_ref_Base::C_Ext::e_Gen, CRNA_ref_Base::C_Ext::e_Name, CRNA_ref_Base::C_Ext::e_TRNA, CRNA_ref_Base::C_Ext::SetGen(), CRNA_ref_Base::C_Ext::SetName(), CRNA_ref_Base::C_Ext::SetTRNA(), CRNA_ref_Base::C_Ext::Which(), x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_name_ETC(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_tRNA_ETC().

Referenced by x_BasicCleanupSeqFeat_data_data_rna(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_ETC ( CRNA_gen &  arg0 )

private

Definition at line 1255 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_ETC ( CRNA_gen &  arg0 )

private

Definition at line 1240 of file autogenerated_cleanup.cpp.

References CLEAN_AND_COMPRESS_STRING_MEMBER, CRNA_gen_Base::IsSetClass(), CRNA_gen_Base::IsSetProduct(), CRNA_gen_Base::IsSetQuals(), m_NewCleanup, CRNA_gen_Base::SetClass(), CRNA_gen_Base::SetProduct(), CRNA_gen_Base::SetQuals(), x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_product_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_ETC(), and CNewCleanup_imp::x_ConvertDoubleQuotesMarkChanged().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_product_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_product_ETC ( std::string &  arg0 )

private

Definition at line 1202 of file autogenerated_cleanup.cpp.

References m_NewCleanup, CNewCleanup_imp::x_ConvertDoubleQuotesMarkChanged(), and CNewCleanup_imp::x_RemoveFlankingQuotes().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_ETC ( CRNA_qual_set &  arg0 )

private

Definition at line 1233 of file autogenerated_cleanup.cpp.

References CRNA_qual_set_Base::IsSet(), CRNA_qual_set_Base::Set(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_quals_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_quals_E_E_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_quals_E_E_ETC ( CRNA_qual &  arg0 )

private

Definition at line 1208 of file autogenerated_cleanup.cpp.

References CLEAN_AND_COMPRESS_STRING_MEMBER, CRNA_qual_Base::IsSetQual(), CRNA_qual_Base::IsSetVal(), m_NewCleanup, CRNA_qual_Base::SetQual(), CRNA_qual_Base::SetVal(), and CNewCleanup_imp::x_ConvertDoubleQuotesMarkChanged().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_quals_E_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_quals_E_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_quals_E_ETC ( CRNA_qual &  arg0 )

private

Definition at line 1220 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_quals_E_E_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_quals_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_quals_ETC()

template<typename Tcontainer_ncbi_cref_crna_qual_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_quals_ETC ( Tcontainer_ncbi_cref_crna_qual_ &  arg0 )

private

Definition at line 1226 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_quals_E_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_name_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_name_ETC ( std::string &  arg0 )

private

Definition at line 1260 of file autogenerated_cleanup.cpp.

References m_NewCleanup, CNewCleanup_imp::x_CleanupStringMarkChanged(), CNewCleanup_imp::x_CompressStringSpacesMarkChanged(), CNewCleanup_imp::x_ConvertDoubleQuotesMarkChanged(), CNewCleanup_imp::x_DecodeXMLMarkChanged(), and CNewCleanup_imp::x_RemoveFlankingQuotes().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_tRNA_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_tRNA_ETC ( CTrna_ext &  arg0 )

private

Definition at line 1276 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_tRNA_tRNA_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_tRNA_tRNA_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_tRNA_tRNA_ETC ( CTrna_ext &  arg0 )

private

Definition at line 1269 of file autogenerated_cleanup.cpp.

References CTrna_ext_Base::IsSetAnticodon(), CTrna_ext_Base::SetAnticodon(), and x_BasicCleanupSeqLoc().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_tRNA_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_ETC ( CTxinit &  arg0 )

private

Definition at line 1411 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_ETC().

Referenced by x_BasicCleanupSeqFeat_data(), and x_BasicCleanupSeqFeat_xref_E_E_data_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_ETC ( CTxinit &  arg0 )

private

Definition at line 1394 of file autogenerated_cleanup.cpp.

References CTxinit_Base::IsSetGene(), CTxinit_Base::IsSetProtein(), CTxinit_Base::IsSetTxorg(), CTxinit_Base::SetGene(), CTxinit_Base::SetProtein(), CTxinit_Base::SetTxorg(), x_BasicCleanupGeneRef(), x_BasicCleanupProtRef(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_txorg_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_desc_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_desc_ETC ( std::string &  arg0 )

private

Definition at line 936 of file autogenerated_cleanup.cpp.

References m_NewCleanup, CNewCleanup_imp::x_CompressStringSpacesMarkChanged(), and CNewCleanup_imp::x_ConvertDoubleQuotesMarkChanged().

Referenced by x_BasicCleanupGeneRef().

x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_locus_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_locus_ETC ( std::string &  arg0 )

private

Definition at line 942 of file autogenerated_cleanup.cpp.

References m_NewCleanup, CNewCleanup_imp::x_ConvertDoubleQuotesMarkChanged(), CNewCleanup_imp::x_DecodeXMLMarkChanged(), and CNewCleanup_imp::x_TrimInternalSemicolonsMarkChanged().

Referenced by x_BasicCleanupGeneRef().

x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_syn_E_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_syn_E_ETC ( std::string &  arg0 )

private

Definition at line 949 of file autogenerated_cleanup.cpp.

References m_NewCleanup, CNewCleanup_imp::x_ConvertDoubleQuotesMarkChanged(), and CNewCleanup_imp::x_DecodeXMLMarkChanged().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_syn_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_syn_ETC()

template<typename Tcontainer_std_string_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_syn_ETC ( Tcontainer_std_string_ &  arg0 )

private

Definition at line 956 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_syn_E_ETC().

Referenced by x_BasicCleanupGeneRef().

x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_activity_E_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_activity_E_ETC ( std::string &  arg0 )

private

Definition at line 1055 of file autogenerated_cleanup.cpp.

References m_NewCleanup, and CNewCleanup_imp::ProtActivityBC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_activity_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_activity_ETC()

template<typename Tcontainer_std_string_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_activity_ETC ( Tcontainer_std_string_ &  arg0 )

private

Definition at line 1061 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_activity_E_ETC().

Referenced by x_BasicCleanupProtRef().

x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_desc_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_desc_ETC ( std::string &  arg0 )

private

Definition at line 1068 of file autogenerated_cleanup.cpp.

References m_NewCleanup, CNewCleanup_imp::x_DecodeXMLMarkChanged(), and CNewCleanup_imp::x_TrimInternalSemicolonsMarkChanged().

Referenced by x_BasicCleanupProtRef().

x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_ec_ETC()

template<typename Tcontainer_std_string_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_ec_ETC ( Tcontainer_std_string_ &  arg0 )

private

Definition at line 1075 of file autogenerated_cleanup.cpp.

References m_NewCleanup, and CNewCleanup_imp::x_CleanupECNumberList().

Referenced by x_BasicCleanupProtRef().

x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_name_E_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_name_E_ETC ( std::string &  arg0 )

private

Definition at line 1080 of file autogenerated_cleanup.cpp.

References m_NewCleanup, CNewCleanup_imp::ProtNameBC(), CNewCleanup_imp::x_CompressStringSpacesMarkChanged(), CNewCleanup_imp::x_ConvertDoubleQuotesMarkChanged(), CNewCleanup_imp::x_DecodeXMLMarkChanged(), and CNewCleanup_imp::x_RemoveFlankingQuotes().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_name_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_name_ETC()

template<typename Tcontainer_std_string_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_name_ETC ( Tcontainer_std_string_ &  arg0 )

private

Definition at line 1090 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_name_E_ETC().

Referenced by x_BasicCleanupProtRef().

x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_ETC()

template<typename Tcontainer_ncbi_cref_cprot_ref_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_ETC ( Tcontainer_ncbi_cref_cprot_ref_ &  arg0 )

private

x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_txorg_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_txorg_ETC ( COrg_ref &  arg0 )

private

Definition at line 1371 of file autogenerated_cleanup.cpp.

References CLEAN_AND_COMPRESS_STRING_MEMBER, CLEAN_STRING_LIST, COrg_ref_Base::IsSetCommon(), COrg_ref_Base::IsSetDb(), COrg_ref_Base::IsSetMod(), COrg_ref_Base::IsSetOrgname(), m_NewCleanup, CNewCleanup_imp::OrgrefBC(), COrg_ref_Base::SetCommon(), COrg_ref_Base::SetDb(), COrg_ref_Base::SetMod(), COrg_ref_Base::SetOrgname(), x_BasicCleanupOrgRefMod(), x_BasicCleanupSeqFeat_dbxref_ETC(), x_BasicCleanupSeqFeatDataOrgName(), CNewCleanup_imp::x_PostOrgRef(), and CNewCleanup_imp::x_TrimInternalSemicolonsMarkChanged().

Referenced by x_BasicCleanupBioseq_descr_descr_E(), x_BasicCleanupBioseqSetDesc(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_ETC(), and x_BasicCleanupSeqFeat_xref_E_E_data_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_E1804_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_E1804_ETC ( CVariation_ref &  arg0 )

private

Definition at line 1510 of file autogenerated_cleanup.cpp.

References CVariation_ref_Base::IsSetConsequence(), CVariation_ref_Base::IsSetData(), CVariation_ref_Base::IsSetSomatic_origin(), CVariation_ref_Base::SetConsequence(), CVariation_ref_Base::SetData(), CVariation_ref_Base::SetSomatic_origin(), x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence(), x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_set_variations_E().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_ETC ( CVariation_ref &  arg0 )

private

Definition at line 1570 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation1805_ETC().

Referenced by x_BasicCleanupSeqFeat_data(), and x_BasicCleanupSeqFeat_xref_E_E_data_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation1805_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation1805_ETC ( CVariation_ref &  arg0 )

private

Definition at line 1557 of file autogenerated_cleanup.cpp.

References CVariation_ref_Base::IsSetConsequence(), CVariation_ref_Base::IsSetData(), CVariation_ref_Base::IsSetSomatic_origin(), CVariation_ref_Base::SetConsequence(), CVariation_ref_Base::SetData(), CVariation_ref_Base::SetSomatic_origin(), x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence(), x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_ETC(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence_E_variation().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence()

template<typename Tcontainer_ncbi_cref_c_e_consequence_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence ( Tcontainer_ncbi_cref_c_e_consequence_ &  arg0 )

private

Definition at line 1444 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence_E().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_E1804_ETC(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation1805_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence_E()

template<typename Tcvariation_ref_container_ncbi_cref_c_e_consequence_c_e_consequence >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence_E ( Tcvariation_ref_container_ncbi_cref_c_e_consequence_c_e_consequence &  arg0 )

private

Definition at line 1432 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence_E_variation().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence_E_variation()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence_E_variation ( CVariation_ref &  arg0 )

private

Definition at line 1426 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation1805_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_consequence_E().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data ( CVariation_ref::C_Data &  arg0 )

private

Definition at line 1543 of file autogenerated_cleanup.cpp.

References CVariation_ref_Base::C_Data::e_Instance, CVariation_ref_Base::C_Data::e_Set, CVariation_ref_Base::C_Data::SetInstance(), CVariation_ref_Base::C_Data::SetSet(), CVariation_ref_Base::C_Data::Which(), x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_ETC(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_set().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_E1804_ETC(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation1805_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_ETC ( CVariation_inst &  arg0 )

private

Definition at line 1489 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_E_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_E_ETC ( CDelta_item &  arg0 )

private

Definition at line 1462 of file autogenerated_cleanup.cpp.

References CDelta_item_Base::IsSetSeq(), CDelta_item_Base::SetSeq(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_E_seq_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_E_seq_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_E_seq_ETC ( CDelta_item::C_Seq &  arg0 )

private

Definition at line 1451 of file autogenerated_cleanup.cpp.

References CDelta_item_Base::C_Seq::e_Loc, CDelta_item_Base::C_Seq::SetLoc(), CDelta_item_Base::C_Seq::Which(), and x_BasicCleanupSeqLoc().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_E_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_ETC ( CDelta_item &  arg0 )

private

Definition at line 1469 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_E_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_ETC()

template<typename Tcontainer_ncbi_cref_cdelta_item_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_ETC ( Tcontainer_ncbi_cref_cdelta_item_ &  arg0 )

private

Definition at line 1475 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_ETC ( CVariation_inst &  arg0 )

private

Definition at line 1482 of file autogenerated_cleanup.cpp.

References CVariation_inst_Base::IsSetDelta(), CVariation_inst_Base::SetDelta(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_set()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_set ( CVariation_ref::C_Data::C_Set &  arg0 )

private

Definition at line 1536 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_set_variations().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_set_variations()

template<typename Tcontainer_ncbi_cref_cvariation_ref_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_set_variations ( Tcontainer_ncbi_cref_cvariation_ref_ &  arg0 )

private

Definition at line 1529 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_set_variations_E().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_set().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_set_variations_E()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_set_variations_E ( CVariation_ref &  arg0 )

private

Definition at line 1523 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_E1804_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_set_variations().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_location_location_equiv_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_location_location_equiv_ETC ( CSeq_loc_equiv &  arg0 )

private

Definition at line 1638 of file autogenerated_cleanup.cpp.

References CSeq_loc_equiv_Base::IsSet(), CSeq_loc_equiv_Base::Set(), and x_BasicCleanupSeqLocs().

Referenced by x_BasicCleanupSeqFeat_location_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_E_ETC()

template<typename Tcvariation_ref_container_ncbi_cref_c_e_somatic_origin_c_e_somatic_origin >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_E_ETC ( Tcvariation_ref_container_ncbi_cref_c_e_somatic_origin_c_e_somatic_origin &  arg0 )

private

Definition at line 1495 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_E_source_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_E_source_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_E_source_ETC ( CSubSource &  arg0 )

private

Definition at line 819 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_E_source_source_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_subtype_ETC(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_E_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_E_source_source_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_E_source_source_ETC ( CSubSource &  arg0 )

private

Definition at line 814 of file autogenerated_cleanup.cpp.

References m_NewCleanup, and CNewCleanup_imp::x_SubSourceBC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_E_source_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_ETC()

template<typename Tcontainer_ncbi_cref_c_e_somatic_origin_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_ETC ( Tcontainer_ncbi_cref_c_e_somatic_origin_ &  arg0 )

private

Definition at line 1503 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_E_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_E1804_ETC(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation1805_ETC().

x_BasicCleanupSeqFeat_xref_E_E_data_ETC()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_E_E_data_ETC ( CSeqFeatData &  arg0 )

private

Definition at line 1849 of file autogenerated_cleanup.cpp.

References CSeqFeatData_Base::e_Biosrc, CSeqFeatData_Base::e_Cdregion, CSeqFeatData_Base::e_Clone, CSeqFeatData_Base::e_Gene, CSeqFeatData_Base::e_Imp, CSeqFeatData_Base::e_Num, CSeqFeatData_Base::e_Org, CSeqFeatData_Base::e_Prot, CSeqFeatData_Base::e_Pub, CSeqFeatData_Base::e_Rna, CSeqFeatData_Base::e_Seq, CSeqFeatData_Base::e_Txinit, CSeqFeatData_Base::e_Variation, CSeqFeatData::SetBiosrc(), CSeqFeatData::SetCdregion(), CSeqFeatData::SetClone(), CSeqFeatData::SetGene(), CSeqFeatData::SetImp(), CSeqFeatData::SetNum(), CSeqFeatData::SetOrg(), CSeqFeatData::SetProt(), CSeqFeatData::SetPub(), CSeqFeatData::SetRna(), CSeqFeatData::SetSeq(), CSeqFeatData::SetTxinit(), CSeqFeatData::SetVariation(), CSeqFeatData_Base::Which(), x_BasicCleanupGeneRef(), x_BasicCleanupNumbering(), x_BasicCleanupProtRef(), x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_imp_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_txorg_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_ETC(), x_BasicCleanupSeqFeatXrefPub(), and x_BasicCleanupSeqLoc().

Referenced by x_BasicCleanupSeqFeatXref().

x_BasicCleanupSeqFeat_xref_ETC()

template<typename Tcontainer_ncbi_cref_cseqfeatxref_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeat_xref_ETC ( Tcontainer_ncbi_cref_cseqfeatxref_ &  arg0 )

private

Definition at line 1906 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqFeatXref().

Referenced by BasicCleanupSeqFeat().

x_BasicCleanupSeqFeatDataOrgName()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeatDataOrgName ( COrgName &  arg0, bool  cleanup_parent_biosource  )

private

Definition at line 766 of file autogenerated_cleanup.cpp.

References CLEAN_STRING_MEMBER, COrgName_Base::IsSetMod(), COrgName_Base::IsSetName(), m_NewCleanup, m_pCurrentBioSource, COrgName_Base::SetMod(), COrgName_Base::SetName(), x_BasicCleanupOrgNameName(), x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org_org_orgname_orgname_mod_ETC(), and CNewCleanup_imp::x_CleanupOrgModAndSubSourceOther().

Referenced by x_BasicCleanupOrgRef(), x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org(), and x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_txorg_ETC().

x_BasicCleanupSeqFeats()

template<typename TSeqFeatContainer >

void CAutogeneratedCleanup::x_BasicCleanupSeqFeats ( TSeqFeatContainer &  feats )

private

Definition at line 1985 of file autogenerated_cleanup.cpp.

References BasicCleanupSeqFeat().

Referenced by x_BasicCleanupBioseq_inst_inst_ext_ext_map(), and x_BasicCleanupSeqAnnotData().

x_BasicCleanupSeqFeatSupport()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeatSupport ( CSeqFeatSupport &  arg0 )

private

Definition at line 1761 of file autogenerated_cleanup.cpp.

References CSeqFeatSupport_Base::IsSetInference(), CSeqFeatSupport_Base::IsSetModel_evidence(), CSeqFeatSupport_Base::SetInference(), CSeqFeatSupport_Base::SetModel_evidence(), x_BasicCleanupSeqFeat_support_support_inference_ETC(), and x_BasicCleanupSeqFeat_support_support_model_evidence_ETC().

Referenced by BasicCleanupSeqFeat().

x_BasicCleanupSeqFeatXref()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeatXref ( CSeqFeatXref &  arg0 )

private

Definition at line 1897 of file autogenerated_cleanup.cpp.

References CSeqFeatXref_Base::IsSetData(), CSeqFeatXref_Base::SetData(), and x_BasicCleanupSeqFeat_xref_E_E_data_ETC().

Referenced by x_BasicCleanupSeqFeat_xref_ETC().

x_BasicCleanupSeqFeatXrefPub()

void CAutogeneratedCleanup::x_BasicCleanupSeqFeatXrefPub ( CPubdesc &  arg0 )

private

Definition at line 1825 of file autogenerated_cleanup.cpp.

References CPubdesc_Base::IsSetComment(), CPubdesc_Base::IsSetNum(), CPubdesc_Base::IsSetPub(), m_NewCleanup, CNewCleanup_imp::PubdescBC(), CPubdesc_Base::SetComment(), CPubdesc_Base::SetNum(), CPubdesc_Base::SetPub(), x_BasicCleanupNumbering(), x_BasicCleanupPubEquiv(), and CNewCleanup_imp::x_ConvertDoubleQuotesMarkChanged().

Referenced by x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_ETC(), and x_BasicCleanupSeqFeat_xref_E_E_data_ETC().

x_BasicCleanupSeqGraph()

void CAutogeneratedCleanup::x_BasicCleanupSeqGraph ( CSeq_graph &  arg0 )

private

Definition at line 1993 of file autogenerated_cleanup.cpp.

References CSeq_graph_Base::IsSetLoc(), CSeq_graph_Base::SetLoc(), and x_BasicCleanupSeqLoc().

Referenced by x_BasicCleanupSeqAnnotGraph().

x_BasicCleanupSeqHist()

void CAutogeneratedCleanup::x_BasicCleanupSeqHist ( CSeq_hist &  arg0 )

private

Definition at line 2488 of file autogenerated_cleanup.cpp.

References CSeq_hist_Base::IsSetAssembly(), CSeq_hist_Base::IsSetDeleted(), CSeq_hist_Base::IsSetReplaced_by(), CSeq_hist_Base::IsSetReplaces(), CSeq_hist_Base::SetAssembly(), CSeq_hist_Base::SetDeleted(), CSeq_hist_Base::SetReplaced_by(), CSeq_hist_Base::SetReplaces(), x_BasicCleanupSeqAligns(), x_BasicCleanupSeqHistDeleted(), and x_BasicCleanupSeqHistRec().

Referenced by x_BasicCleanupBioseq_inst().

x_BasicCleanupSeqHistDeleted()

void CAutogeneratedCleanup::x_BasicCleanupSeqHistDeleted ( CSeq_hist::C_Deleted &  arg0 )

private

Definition at line 2466 of file autogenerated_cleanup.cpp.

References CSeq_hist_Base::C_Deleted::e_Date, CSeq_hist_Base::C_Deleted::SetDate(), CSeq_hist_Base::C_Deleted::Which(), and x_BasicCleanupDate().

Referenced by x_BasicCleanupSeqHist().

x_BasicCleanupSeqHistRec()

void CAutogeneratedCleanup::x_BasicCleanupSeqHistRec ( CSeq_hist_rec &  arg0 )

private

Definition at line 2477 of file autogenerated_cleanup.cpp.

References CSeq_hist_rec_Base::IsSetDate(), CSeq_hist_rec_Base::IsSetIds(), CSeq_hist_rec_Base::SetDate(), CSeq_hist_rec_Base::SetIds(), x_BasicCleanupDate(), and x_BasicCleanupSeqIds().

Referenced by x_BasicCleanupSeqHist().

x_BasicCleanupSeqId()

void CAutogeneratedCleanup::x_BasicCleanupSeqId ( CSeq_id &  id )

private

Definition at line 52 of file autogenerated_cleanup.cpp.

References CSeq_id_Base::GetPdb(), CSeq_id_Base::IsPdb(), CPDB_seq_id_Base::IsSetRel(), m_NewCleanup, CNewCleanup_imp::SeqIdBC(), CSeq_id_Base::SetPdb(), CPDB_seq_id_Base::SetRel(), and x_BasicCleanupDate().

Referenced by x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_ETC(), x_BasicCleanupModelEvidenceSupport(), x_BasicCleanupPackedPoint(), x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_sparse_other_sparse_other_ETC(), x_BasicCleanupSeqFeat_location_ETC(), x_BasicCleanupSeqFeat_support_support_model_evidence_E_E_protein_E_ETC(), x_BasicCleanupSeqIds(), x_BasicCleanupSeqInt(), x_BasicCleanupSeqLoc(), x_BasicCleanupSeqPoint(), x_BasicCleanupSparseAlign(), x_BasicCleanupSplicedExon(), x_BasicCleanupSplicedSeg(), and x_BasicCleaupSparseSeg().

x_BasicCleanupSeqIds()

template<typename TSeqIdContainer >

void CAutogeneratedCleanup::x_BasicCleanupSeqIds ( TSeqIdContainer &  ids )

private

Definition at line 173 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqId().

Referenced by BasicCleanupBioseq(), x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_E_align_ETC(), x_BasicCleanupDenseDiag(), x_BasicCleanupDenseg(), x_BasicCleanupPackedSeg(), x_BasicCleanupPIRBlock(), x_BasicCleanupSeqAnnotData(), x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data1712_ETC(), x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_int_delta1713_ETC(), x_BasicCleanupSeqFeat_support_support_inference_E_E_basis_basis_ETC(), x_BasicCleanupSeqHistRec(), x_BasicCleanupSeqSubmit_data(), x_BasicCleanupSPBlock(), and x_BasicCleanupStdSeg().

x_BasicCleanupSeqInt()

void CAutogeneratedCleanup::x_BasicCleanupSeqInt ( CSeq_interval &  seq_int )

private

Definition at line 86 of file autogenerated_cleanup.cpp.

References CSeq_interval_Base::IsSetId(), CSeq_interval_Base::SetId(), and x_BasicCleanupSeqId().

Referenced by x_BasicCleanupPackedSeqInt(), x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_sparse_other_sparse_other_ETC(), x_BasicCleanupSeqFeat_location_ETC(), x_BasicCleanupSeqInts(), and x_BasicCleanupSeqLoc().

x_BasicCleanupSeqInts()

template<typename Tcontainer_ncbi_cref_cseq_interval_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqInts ( Tcontainer_ncbi_cref_cseq_interval_ &  arg0 )

private

Definition at line 103 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqInt().

Referenced by x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data1712_ETC(), and x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_int_delta1713_ETC().

x_BasicCleanupSeqLoc()

void CAutogeneratedCleanup::x_BasicCleanupSeqLoc ( CSeq_loc &  seq_loc )

private

Definition at line 127 of file autogenerated_cleanup.cpp.

References CSeq_loc_Base::e_Bond, CSeq_loc_Base::e_Empty, CSeq_loc_Base::e_Equiv, CSeq_loc_Base::e_Int, CSeq_loc_Base::e_Mix, CSeq_loc_Base::e_Packed_int, CSeq_loc_Base::e_Packed_pnt, CSeq_loc_Base::e_Pnt, CSeq_loc_Base::e_Whole, m_NewCleanup, CNewCleanup_imp::SeqLocBC(), CSeq_loc::SetBond(), CSeq_loc::SetEmpty(), CSeq_loc::SetEquiv(), CSeq_loc::SetInt(), CSeq_loc::SetMix(), CSeq_loc::SetPacked_int(), CSeq_loc::SetPacked_pnt(), CSeq_loc::SetPnt(), CSeq_loc::SetWhole(), CSeq_loc_Base::Which(), x_BasicCleanupPackedPoint(), x_BasicCleanupPackedSeqInt(), x_BasicCleanupSeqBond(), x_BasicCleanupSeqId(), x_BasicCleanupSeqInt(), x_BasicCleanupSeqLocEquiv(), x_BasicCleanupSeqLocMix(), x_BasicCleanupSeqPoint(), and CNewCleanup_imp::x_BothStrandBC().

Referenced by BasicCleanupSeqFeat(), x_BasicCleanupBioseqSet_annot_E_E_desc_desc_E_ETC(), x_BasicCleanupDeltaExt(), x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_sparse_other_sparse_other_ETC(), x_BasicCleanupSeqExt(), x_BasicCleanupSeqFeat_data(), x_BasicCleanupSeqFeat_xref_E_E_data_data_cdregion_cdregion_code_break_E_E_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_clone_clone_clone_seq_clone_seq_E_E_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_tRNA_tRNA_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_data_instance_instance_delta_E_E_seq_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_ETC(), x_BasicCleanupSeqGraph(), and x_BasicCleanupSeqLocs().

x_BasicCleanupSeqLocEquiv()

void CAutogeneratedCleanup::x_BasicCleanupSeqLocEquiv ( CSeq_loc_equiv &  arg0 )

private

Definition at line 79 of file autogenerated_cleanup.cpp.

References CSeq_loc_equiv_Base::IsSet(), CSeq_loc_equiv_Base::Set(), and x_BasicCleanupSeqLocs().

Referenced by x_BasicCleanupSeqLoc().

x_BasicCleanupSeqLocMix()

void CAutogeneratedCleanup::x_BasicCleanupSeqLocMix ( CSeq_loc_mix &  arg0 )

private

Definition at line 94 of file autogenerated_cleanup.cpp.

References CSeq_loc_mix_Base::IsSet(), m_NewCleanup, CNewCleanup_imp::SeqLocMixBC(), CSeq_loc_mix_Base::Set(), and x_BasicCleanupSeqLocs().

Referenced by x_BasicCleanupSeqFeat_location_ETC(), and x_BasicCleanupSeqLoc().

x_BasicCleanupSeqLocs()

template<typename TSeqLocContainer >

void CAutogeneratedCleanup::x_BasicCleanupSeqLocs ( TSeqLocContainer &  locs )

private

Definition at line 165 of file autogenerated_cleanup.cpp.

References x_BasicCleanupSeqLoc().

Referenced by x_BasicCleanupBioseqSet_seq_set_E_E_seq_seq_inst_inst_ext_ext_seg_ETC(), x_BasicCleanupSeqAlign(), x_BasicCleanupSeqAnnotData(), x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_data1712_ETC(), x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_E_E_data_int_delta1713_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_location_location_equiv_ETC(), x_BasicCleanupSeqLocEquiv(), x_BasicCleanupSeqLocMix(), and x_BasicCleanupStdSeg().

x_BasicCleanupSeqPoint()

void CAutogeneratedCleanup::x_BasicCleanupSeqPoint ( CSeq_point &  seq_point )

private

Definition at line 61 of file autogenerated_cleanup.cpp.

References CSeq_point_Base::IsSetId(), CSeq_point_Base::SetId(), and x_BasicCleanupSeqId().

Referenced by x_BasicCleanupSeqBond(), x_BasicCleanupSeqFeat_location_ETC(), and x_BasicCleanupSeqLoc().

x_BasicCleanupSeqSubmit_data()

void CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_data ( CSeq_submit::C_Data &  arg0 )

private

Definition at line 2686 of file autogenerated_cleanup.cpp.

References BasicCleanupSeqEntry(), CSeq_submit_Base::C_Data::e_Annots, CSeq_submit_Base::C_Data::e_Delete, CSeq_submit_Base::C_Data::e_Entrys, CSeq_submit_Base::C_Data::SetAnnots(), CSeq_submit_Base::C_Data::SetDelete(), CSeq_submit_Base::C_Data::SetEntrys(), CSeq_submit_Base::C_Data::Which(), x_BasicCleanupSeqIds(), and x_BasicCleanupSeqSubmit_data_annots().

Referenced by BasicCleanupSeqSubmit().

x_BasicCleanupSeqSubmit_data_annots()

template<typename Tcontainer_ncbi_cref_cseq_annot_ >

void CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_data_annots ( Tcontainer_ncbi_cref_cseq_annot_ &  arg0 )

private

Definition at line 2678 of file autogenerated_cleanup.cpp.

References NON_CONST_ITERATE, and x_BasicCleanupSeqSubmit_data_annots_E().

Referenced by x_BasicCleanupSeqSubmit_data().

x_BasicCleanupSeqSubmit_data_annots_E()

void CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_data_annots_E ( CSeq_annot &  arg0 )

private

Definition at line 2666 of file autogenerated_cleanup.cpp.

References CSeq_annot_Base::IsSetData(), CSeq_annot_Base::IsSetDesc(), CSeq_annot_Base::SetData(), CSeq_annot_Base::SetDesc(), x_BasicCleanupBioseqSet_annot_E_E_desc_ETC(), and x_BasicCleanupSeqAnnotData().

Referenced by x_BasicCleanupSeqSubmit_data_annots().

x_BasicCleanupSeqSubmit_sub()

void CAutogeneratedCleanup::x_BasicCleanupSeqSubmit_sub ( CSubmit_block &  arg0 )

private

Definition at line 2728 of file autogenerated_cleanup.cpp.

References CSubmit_block_Base::IsSetCit(), CSubmit_block_Base::IsSetContact(), CSubmit_block_Base::IsSetReldate(), CSubmit_block_Base::SetCit(), CSubmit_block_Base::SetContact(), CSubmit_block_Base::SetReldate(), x_BasicCleanupCitSub(), x_BasicCleanupContactInfo(), and x_BasicCleanupDate().

Referenced by BasicCleanupSeqSubmit().

x_BasicCleanupSeqTable()

void CAutogeneratedCleanup::x_BasicCleanupSeqTable ( CSeq_table &  arg0 )

private

Definition at line 2149 of file autogenerated_cleanup.cpp.

References CSeq_table_Base::IsSetColumns(), CSeq_table_Base::SetColumns(), and x_BasicCleanupSeqAnnotData_seq_table_seq_table_columns_ETC().

Referenced by x_BasicCleanupSeqAnnotData().

x_BasicCleanupSparseAlign()

void CAutogeneratedCleanup::x_BasicCleanupSparseAlign ( CSparse_align &  arg0 )

private

Definition at line 221 of file autogenerated_cleanup.cpp.

References CSparse_align_Base::IsSetFirst_id(), CSparse_align_Base::IsSetSecond_id(), CSparse_align_Base::SetFirst_id(), CSparse_align_Base::SetSecond_id(), and x_BasicCleanupSeqId().

Referenced by x_BasicCleaupSparseSeg().

x_BasicCleanupSPBlock()

void CAutogeneratedCleanup::x_BasicCleanupSPBlock ( CSP_block &  arg0 )

private

Definition at line 2320 of file autogenerated_cleanup.cpp.

References CSP_block_Base::IsSetAnnotupd(), CSP_block_Base::IsSetCreated(), CSP_block_Base::IsSetSeqref(), CSP_block_Base::IsSetSequpd(), CSP_block_Base::SetAnnotupd(), CSP_block_Base::SetCreated(), CSP_block_Base::SetSeqref(), CSP_block_Base::SetSequpd(), x_BasicCleanupDate(), and x_BasicCleanupSeqIds().

Referenced by x_BasicCleanupBioseq_descr_descr_E(), and x_BasicCleanupBioseqSetDesc().

x_BasicCleanupSplicedExon()

void CAutogeneratedCleanup::x_BasicCleanupSplicedExon ( CSpliced_exon &  arg0 )

private

Definition at line 244 of file autogenerated_cleanup.cpp.

References CSpliced_exon_Base::IsSetGenomic_id(), CSpliced_exon_Base::IsSetProduct_id(), CSpliced_exon_Base::SetGenomic_id(), CSpliced_exon_Base::SetProduct_id(), and x_BasicCleanupSeqId().

Referenced by x_BasicCleanupSplicedSeg().

x_BasicCleanupSplicedSeg()

void CAutogeneratedCleanup::x_BasicCleanupSplicedSeg ( CSpliced_seg &  arg0 )

private

Definition at line 254 of file autogenerated_cleanup.cpp.

References CSpliced_seg_Base::IsSetExons(), CSpliced_seg_Base::IsSetGenomic_id(), CSpliced_seg_Base::IsSetProduct_id(), CSpliced_seg_Base::SetExons(), CSpliced_seg_Base::SetGenomic_id(), CSpliced_seg_Base::SetProduct_id(), x_BasicCleanupSeqId(), and x_BasicCleanupSplicedExon().

Referenced by x_BasicCleanupAlignSegs().

x_BasicCleanupStdSeg()

void CAutogeneratedCleanup::x_BasicCleanupStdSeg ( CStd_seg &  arg0 )

private

Definition at line 269 of file autogenerated_cleanup.cpp.

References CStd_seg_Base::IsSetIds(), CStd_seg_Base::IsSetLoc(), CStd_seg_Base::SetIds(), CStd_seg_Base::SetLoc(), x_BasicCleanupSeqIds(), and x_BasicCleanupSeqLocs().

Referenced by x_BasicCleanupAlignSegs().

x_BasicCleanupTitle()

void CAutogeneratedCleanup::x_BasicCleanupTitle ( CTitle &  arg0 )

private

Definition at line 495 of file autogenerated_cleanup.cpp.

References CTitle_Base::IsSet(), m_NewCleanup, CTitle_Base::Set(), and CNewCleanup_imp::x_StripSpacesMarkChanged().

Referenced by x_BasicCleanupCitArt().

x_BasicCleaupSparseSeg()

void CAutogeneratedCleanup::x_BasicCleaupSparseSeg ( CSparse_seg &  arg0 )

private

Definition at line 232 of file autogenerated_cleanup.cpp.

References CSparse_seg_Base::IsSetMaster_id(), CSparse_seg_Base::IsSetRows(), CSparse_seg_Base::SetMaster_id(), CSparse_seg_Base::SetRows(), x_BasicCleanupSeqId(), and x_BasicCleanupSparseAlign().

Referenced by x_BasicCleanupAlignSegs().

Member Data Documentation

m_Dummy

int CAutogeneratedCleanup::m_Dummy

private

Definition at line 440 of file autogenerated_cleanup.hpp.

m_LastArg_BasicCleanupBioseq

CBioseq* CAutogeneratedCleanup::m_LastArg_BasicCleanupBioseq

private

Definition at line 435 of file autogenerated_cleanup.hpp.

Referenced by BasicCleanupBioseq(), and x_BasicCleanupMolInfo().

m_LastArg_x_BasicCleanupBioseq_inst_inst

CSeq_inst* CAutogeneratedCleanup::m_LastArg_x_BasicCleanupBioseq_inst_inst

private

Definition at line 438 of file autogenerated_cleanup.hpp.

Referenced by x_BasicCleanupBioseq_inst(), and x_BasicCleanupDeltaExt().

m_NewCleanup

CNewCleanup_imp& CAutogeneratedCleanup::m_NewCleanup

private

Definition at line 433 of file autogenerated_cleanup.hpp.

Referenced by BasicCleanupBioseq(), BasicCleanupBioseqSet(), BasicCleanupSeqEntry(), BasicCleanupSeqFeat(), x_BasicCleanupAffil(), x_BasicCleanupAuthList(), x_BasicCleanupBioseq_descr_descr_E(), x_BasicCleanupBioseqSet_seq_set_E(), x_BasicCleanupBioseqSetDesc(), x_BasicCleanupDeltaExt(), x_BasicCleanupDescComment(), x_BasicCleanupDescRegion(), x_BasicCleanupDescTitle(), x_BasicCleanupEMBLBlock(), x_BasicCleanupGBBlock(), x_BasicCleanupGeneRef(), x_BasicCleanupMolInfo(), x_BasicCleanupOrgRef(), x_BasicCleanupOrgRefMod(), x_BasicCleanupProtRef(), x_BasicCleanupPub(), x_BasicCleanupSeqEntry_set(), x_BasicCleanupSeqFeat_cit_ETC(), x_BasicCleanupSeqFeat_comment(), x_BasicCleanupSeqFeat_data_data_biosrc_biosrc(), x_BasicCleanupSeqFeat_data_data_cdregion_cdregion(), x_BasicCleanupSeqFeat_data_data_pub_ETC(), x_BasicCleanupSeqFeat_data_data_region_ETC(), x_BasicCleanupSeqFeat_data_data_rna(), x_BasicCleanupSeqFeat_data_data_site(), x_BasicCleanupSeqFeat_dbxref_ETC(), x_BasicCleanupSeqFeat_ext_ext1769_ETC(), x_BasicCleanupSeqFeat_location_ETC(), x_BasicCleanupSeqFeat_qual_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org(), x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_org_org_orgname_orgname_mod_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_biosrc_pcr_primers_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_product_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_gen_gen_quals_quals_E_E_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_rna_rna_ext_name_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_desc_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_locus_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_gene_E_E_syn_E_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_activity_E_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_desc_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_ec_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_protein_E_E_name_E_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_txinit_txinit_txorg_ETC(), x_BasicCleanupSeqFeat_xref_E_E_data_data_variation_variation_somatic_origin_E_source_source_ETC(), x_BasicCleanupSeqFeatDataOrgName(), x_BasicCleanupSeqFeatXrefPub(), x_BasicCleanupSeqId(), x_BasicCleanupSeqLoc(), x_BasicCleanupSeqLocMix(), and x_BasicCleanupTitle().

m_pCurrentBioSource

CBioSource* CAutogeneratedCleanup::m_pCurrentBioSource

private

Definition at line 437 of file autogenerated_cleanup.hpp.

Referenced by x_BasicCleanupSeqFeat_data_data_biosrc_biosrc(), x_BasicCleanupSeqFeat_xref_E_E_data_data_biosrc_ETC(), and x_BasicCleanupSeqFeatDataOrgName().

m_pCurrentSeqFeat

CSeq_feat* CAutogeneratedCleanup::m_pCurrentSeqFeat

private

Definition at line 436 of file autogenerated_cleanup.hpp.

Referenced by BasicCleanupSeqFeat(), x_BasicCleanupGeneRef(), x_BasicCleanupOrgRef(), x_BasicCleanupProtRef(), x_BasicCleanupPub(), x_BasicCleanupSeqFeat_data_data_biosrc_biosrc(), x_BasicCleanupSeqFeat_data_data_cdregion_cdregion(), x_BasicCleanupSeqFeat_data_data_rna(), and x_BasicCleanupSeqFeat_data_data_site().

m_Scope

CScope& CAutogeneratedCleanup::m_Scope

private

Definition at line 432 of file autogenerated_cleanup.hpp.

Referenced by BasicCleanupSeqFeat().

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The documentation for this class was generated from the following files:

• src/objtools/cleanup/autogenerated_cleanup.hpp
• src/objtools/cleanup/autogenerated_cleanup.cpp