GUI_PKG_SEQUENCE

Collaboration diagram for GUI_PKG_SEQUENCE:

Modules
	overridables
	overridables

Classes
class	CCleanupPanel
class	CCleanupParams
class	CCleanupTool
	CCleanupTool. More...
class	CGBFlatFileLoadManager
	CGBFlatFileLoadManager. More...
class	CGBFlatFileLoadManager::CPage
class	CGenBankUIDataSource
	CGenBankUIDataSource. More...
class	CGenBankUIDataSourceType
	CGenBankUIDataSourceType. More...
class	CGenBankUILoadManager
	CGenBankUILoadManager. More...
class	CMergeTool
	CCleanupTool. More...
class	CSeqTextView
	CSeqTextView. More...
class	CSeqTextViewFactory
	CSeqTextViewFactory. More...
class	CSNPSearchTool
	CSNPSearchTool. More...
class	CSNPSearchQuery
	CSNPSearchTool. More...
class	CSNPSearchForm
	CSNPSearchForm. More...
class	CSNPSearchJob
	CSNPSearchJob. More...
class	CFeatTableView
	CFeatTableView. More...
class	CFeatTableViewFactory
	CFeatTableViewFactory. More...
class	CViewGraphic
	CViewGraphic. More...
class	CViewGraphicFactory
	CViewGraphicFactory. More...
class	CAutodefToolManager
	CAutodefToolManager. More...
class	CAutodefJob
	CAutodefJob. More...
class	CSequinDesktopView
	CSequinDesktopView. More...
class	CSequinDesktopViewFactory
	CSequinDesktopViewFactory. More...
class	CSrcEditParams
class	CSrcEditTool
	CSrcEditTool. More...
class	C5ColObjectLoader
	C5ColObjectLoader. More...
class	CAgpObjectLoader
	C5ColObjectLoader. More...
class	CAssemblyObjectLoader
	CAssemblyObjectLoader. More...
class	CBedObjectLoader
	CBedObjectLoader. More...
class	CChainLoader
	CChainLoader. More...
class	CFASTAFormatParamsPanel
	CFASTAFormatParamsPanel. More...
class	CFastaLoadParams
class	CGBFlatFileObjectLoader
	CGBFlatFileObjectLoader. More...
class	CGenBankLoadOptionPanel
	CGenBankLoadOptionPanel. More...
class	CGenBankLoadOptionPanel::CAccDescriptor
struct	CGenBankLoadOptionPanel::Token
class	CGBObjectLoader
	CGBObjectLoader. More...
class	CGffLoadParams
class	CGffObjectLoader
	CGffObjectLoader. More...
class	CGffParamsPanel
class	CPhyObjectLoader
class	CPslObjectLoader
	CPslObjectLoader. More...
class	CVcfObjectLoader
	CVcfObjectLoader. More...
class	CWigObjectLoader
	CWigObjectLoader. More...
class	CPhyLoader
	CPhyLoader. More...
class	CRMLoader
	CRMLoader. More...
class	C5ColLoadManager
	C5ColLoadManager. More...
class	CAgpLoader
	CAgpLoader. More...
class	CAgpLoader::CPage
class	CBedLoadManager
	CBedLoadManager. More...
class	CBedLoadManager::CPage
class	CColumnarVCFLoaderManager
	CColumnarVCFLoaderManager. More...
class	CComponentSearchTool
	CComponentSearchTool. More...
class	CComponentSearchQuery
	CComponentSearchTool. More...
class	CComponentSearchForm
class	CComponentSearchJob
	CComponentSearchJob. More...
class	CCpgSearchTool
	CCpgSearchTool. More...
class	CCpgSearchQuery
	CCpgSearchTool. More...
class	CCpgSearchForm
class	CCpgSearchJob
	CCpgSearchJob. More...
class	CEntrezSearchTool
	CEntrezSearchTool. More...
class	CEntrezSearchQuery
	CEntrezSearchTool. More...
class	CEntrezSearchForm
	CTestSearchForm. More...
class	CEntrezSearchJob
	CEntrezSearchJob. More...
class	CFASTAFormatLoadManager
	CFASTAFormatLoadManager. More...
class	CFASTAFormatLoadManager::CPage
class	CFeatureSearchTool
	CFeatureSearchTool. More...
class	CFeatureSearchQuery
	CFeatureSearchTool. More...
class	CFeatureSearchForm
class	CFeatureSearchJob
	CFeatureSearchJob. More...
class	CGffLoadManager
	CGffLoadManager. More...
class	CGffLoadManager::CPage
class	COrfSearchTool
	COrfSearchTool. More...
class	COrfSearchQuery
	COrfSearchTool. More...
class	COrfSearchForm
struct	COrfSearchForm::SKozakPattern
class	COrfSearchJob
	COrfSearchJob. More...
class	CSequenceSearchTool
	CSequenceSearchTool. More...
class	CSequenceSearchQuery
	CSequenceSearchTool. More...
class	CSequenceSearchForm
class	CSequenceSearchJob
	CSequenceSearchJob. More...
class	CTextView
	CTextView. More...
class	CTextViewFactory
	CTextViewFactory. More...
class	CVCFLoaderManager
	CVCFLoaderManager. More...
class	CVCFLoaderManager::CPage
class	CVcfSearchTool
	CVcfSearchTool. More...
class	CVcfSearchQuery
	CVcfSearchQuery. More...
class	CVcfSearchForm
class	CVcfSearchJob
	CVcfSearchJob. More...
class	CWigLoadManager
	CWigLoadManager. More...
class	CWigLoadManager::CPage
class	CResolveIdDlg

Typedefs
typedef pair< const char *, const char * >	CSNPSearchJob::TPair
typedef CTimeMRUList< CAccDescriptor >	CGenBankLoadOptionPanel::TMRUAccList
typedef vector< CRef< CObject > >	CGenBankLoadOptionPanel::TIdsVec
typedef CComponentSearchQuery::TScopedLocs	CComponentSearchForm::TScopedLocs
typedef CComponentSearchQuery::SScopedLoc	CComponentSearchJob::TScopedLoc
typedef CComponentSearchQuery::TScopedLocs	CComponentSearchJob::TScopedLocs
typedef CCpgSearchQuery::TScopedLocs	CCpgSearchForm::TScopedLocs
typedef CCpgSearchQuery::SScopedLoc	CCpgSearchJob::TScopedLoc
typedef CCpgSearchQuery::TScopedLocs	CCpgSearchJob::TScopedLocs
typedef CRangeCollection< TSeqPos >	CCpgSearchJob::TRangeCollection
typedef pair< const char *, const char * >	CEntrezSearchJob::TPair
typedef CFeatureSearchTool::EPatternType	CFeatureSearchQuery::TPatternType
typedef objects::CFeatListItem	CFeatureSearchQuery::TFeatTypeItem
typedef set< TFeatTypeItem >	CFeatureSearchQuery::TFeatTypeItemSet
typedef CFeatureSearchQuery::TScopedLocs	CFeatureSearchForm::TScopedLocs
typedef CFeatureSearchQuery::TFeatTypeItem	CFeatureSearchJob::TFeatTypeItem
typedef CFeatureSearchQuery::TFeatTypeItemSet	CFeatureSearchJob::TFeatTypeItemSet
typedef CFeatureSearchQuery::SScopedLoc	CFeatureSearchJob::TScopedLoc
typedef CFeatureSearchQuery::TScopedLocs	CFeatureSearchJob::TScopedLocs
typedef CSearchToolBase::EPatternType	CFeatureSearchJob::TPatternType
typedef COrfSearchQuery::TScopedLocs	COrfSearchForm::TScopedLocs
typedef struct SKozakPattern	COrfSearchForm::TKozakPattern
typedef list< TKozakPattern >	COrfSearchForm::TKozakList
typedef COrfSearchQuery::SScopedLoc	COrfSearchJob::TScopedLoc
typedef COrfSearchQuery::TScopedLocs	COrfSearchJob::TScopedLocs
typedef CRangeCollection< TSeqPos >	COrfSearchJob::TRangeCollection
typedef CSequenceSearchTool::EPatternType	CSequenceSearchQuery::TPatternType
typedef CSequenceSearchQuery::TScopedLocs	CSequenceSearchForm::TScopedLocs
typedef pair< string, string >	CSequenceSearchForm::TDescPattern
typedef list< TDescPattern >	CSequenceSearchForm::TDescPatList
typedef pair< wxString, TDescPatList >	CSequenceSearchForm::TPattern
typedef map< string, TPattern >	CSequenceSearchForm::TFileList
typedef CSearchToolBase::EPatternType	CSequenceSearchForm::TPatternType
typedef CSequenceSearchQuery::SScopedLoc	CSequenceSearchJob::TScopedLoc
typedef CSequenceSearchQuery::TScopedLocs	CSequenceSearchJob::TScopedLocs
typedef set< pair< TSeqPos, TSeqPos > >	CSequenceSearchJob::TRangeCollection
typedef CSearchToolBase::EPatternType	CSequenceSearchJob::TPatternType
typedef vector< objects::CSeq_id_Handle >	CResolveIdDlg::THandles
typedef vector< pair< string, THandles > >	CResolveIdDlg::TData
typedef map< objects::CSeq_id_Handle, objects::CSeq_id_Handle >	CResolveIdDlg::TIdMap

Enumerations
enum	{ CCleanupPanel::ID_CCLEANUPPANEL = 10000 , CCleanupPanel::ID_LISTCTRL1 = 10001 , CCleanupPanel::ID_RADIOBOX1 = 10002 }
	Control identifiers. More...
enum	CGBFlatFileLoadManager::EState { CGBFlatFileLoadManager::eInvalid = -1 , CGBFlatFileLoadManager::eParams , CGBFlatFileLoadManager::eCompleted }
enum	EGenBankCommands { eCmdLoadFromGenBank = 12250 }
	commands introduced by Net BLAST data source More...
enum	CGenBankUILoadManager::EState { CGenBankUILoadManager::eInvalid = -1 , CGenBankUILoadManager::eSelectAcc , CGenBankUILoadManager::eSelectProject , CGenBankUILoadManager::eCompleted }
enum	{   CFASTAFormatParamsPanel::ID_CFASTAFORMATPARAMSPANEL = 10033 , CFASTAFormatParamsPanel::ID_SEQ_TYPE = 10040 , CFASTAFormatParamsPanel::ID_LOWERCASE = 10039 , CFASTAFormatParamsPanel::ID_CHECKBOX1 = 10034 ,   CFASTAFormatParamsPanel::ID_CHECKBOX2 = 10035 , CFASTAFormatParamsPanel::ID_CHECKBOX8 = 10021 , CFASTAFormatParamsPanel::ID_CHECKBOX4 = 10037 , CFASTAFormatParamsPanel::ID_CHECKBOX5 = 10038 ,   CFASTAFormatParamsPanel::ID_CHECKBOX = 10009 }
	Control identifiers. More...
enum	{ CGenBankLoadOptionPanel::ID_CGENBANKLOADOPTIONPANEL = 10013 , CGenBankLoadOptionPanel::ID_ACC_INPUT = 10022 , CGenBankLoadOptionPanel::ID_HTMLWINDOW2 = 10002 }
	Control identifiers. More...
enum	{   CGffParamsPanel::ID_CGFFPARAMSPANEL = 10003 , CGffParamsPanel::ID_CHOICE2 = 10005 , CGffParamsPanel::ID_TEXTCTRL1 = 10012 , CGffParamsPanel::ID_PANEL = 10004 ,   CGffParamsPanel::ID_SEQ_ID_NORMAL = 10025 , CGffParamsPanel::IDSEQ_ID_NUMERIC = 10026 , CGffParamsPanel::ID_SEQ_ID_LOCAL = 10027 , CGffParamsPanel::ID_PANEL7 = 10091 }
	Control identifiers. More...
enum	CAgpLoader::EState { CAgpLoader::eInvalid = -1 , CAgpLoader::eParams , CAgpLoader::eCompleted }
enum	CBedLoadManager::EState { CBedLoadManager::eInvalid = -1 , CBedLoadManager::eParams , CBedLoadManager::eCompleted }
enum	CColumnarVCFLoaderManager::EState {   CColumnarVCFLoaderManager::eInvalid = -1 , CColumnarVCFLoaderManager::eAssembly , CColumnarVCFLoaderManager::eInfoSelection , CColumnarVCFLoaderManager::eSampleSelection ,   CColumnarVCFLoaderManager::eRefSequences , CColumnarVCFLoaderManager::eCompleted }
enum	CFASTAFormatLoadManager::EState { CFASTAFormatLoadManager::eInvalid = -1 , CFASTAFormatLoadManager::eParams , CFASTAFormatLoadManager::eCompleted }
enum	CGffLoadManager::EState { CGffLoadManager::eInvalid = -1 , CGffLoadManager::eParams , CGffLoadManager::eCompleted }
enum	CVCFLoaderManager::EState { CVCFLoaderManager::eInvalid = -1 , CVCFLoaderManager::eParams , CVCFLoaderManager::eCompleted }
enum	CWigLoadManager::EState { CWigLoadManager::eInvalid = -1 , CWigLoadManager::eParams , CWigLoadManager::eCompleted }
enum	{ CResolveIdDlg::ID_CRESOLVEIDDLG = 10014 , CResolveIdDlg::ID_GRID = 10016 }
	Control identifiers. More...

Functions
	CCleanupPanel::CCleanupPanel ()
	Constructors. More...
	CCleanupPanel::CCleanupPanel (wxWindow *parent, wxWindowID id=ID_CCLEANUPPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)
bool	CCleanupPanel::Create (wxWindow *parent, wxWindowID id=ID_CCLEANUPPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)
	Creation. More...
	CCleanupPanel::~CCleanupPanel ()
	Destructor. More...
void	CCleanupPanel::Init ()
	Initialises member variables. More...
void	CCleanupPanel::CreateControls ()
	Creates the controls and sizers. More...
virtual bool	CCleanupPanel::TransferDataToWindow ()
	Transfer data to the window. More...
virtual bool	CCleanupPanel::TransferDataFromWindow ()
	Transfer data from the window. More...
CCleanupParams &	CCleanupPanel::GetData ()
	Data access. More...
const CCleanupParams &	CCleanupPanel::GetData () const
void	CCleanupPanel::SetData (const CCleanupParams &data)
wxBitmap	CCleanupPanel::GetBitmapResource (const wxString &name)
	Retrieves bitmap resources. More...
wxIcon	CCleanupPanel::GetIconResource (const wxString &name)
	Retrieves icon resources. More...
void	CCleanupPanel::SetObjects (TConstScopedObjects *objects)
static bool	CCleanupPanel::ShowToolTips ()
	Should we show tooltips? More...
	CCleanupParams::CCleanupParams ()
	Default constructor for CCleanupParams. More...
	CCleanupParams::CCleanupParams (const CCleanupParams &data)
	Copy constructor for CCleanupParams. More...
	CCleanupParams::~CCleanupParams ()
	Destructor for CCleanupParams. More...
void	CCleanupParams::operator= (const CCleanupParams &data)
	Assignment operator for CCleanupParams. More...
bool	CCleanupParams::operator== (const CCleanupParams &data) const
	Equality operator for CCleanupParams. More...
void	CCleanupParams::Copy (const CCleanupParams &data)
	Copy function for CCleanupParams. More...
void	CCleanupParams::Init ()
	Initialises member variables. More...
virtual void	CCleanupParams::SetRegistryPath (const string &path)
	IRegSettings. More...
virtual void	CCleanupParams::SaveSettings () const
virtual void	CCleanupParams::LoadSettings ()
const TConstScopedObjects &	CCleanupParams::GetObjects () const
TConstScopedObjects &	CCleanupParams::SetObjects ()
int	CCleanupParams::GetCleanupMode () const
void	CCleanupParams::SetCleanupMode (int value)
	CCleanupTool::CCleanupTool ()
	CCleanupTool. More...
virtual void	CCleanupTool::x_SelectCompatibleInputObjects ()
	CGBFlatFileLoadManager::CGBFlatFileLoadManager ()
	CGBFlatFileLoadManager. More...
static string	CGBFlatFileLoadManager::Id ()
static string	CGBFlatFileLoadManager::Label ()
	CGBFlatFileLoadManager::CPage::CPage (CGBFlatFileLoadManager &mgr)
virtual wxPanel *	CGBFlatFileLoadManager::CPage::GetPanel ()
virtual bool	CGBFlatFileLoadManager::CPage::CanLeavePage (bool)
CGBFlatFileParamsPanel *	CGBFlatFileLoadManager::x_GetParamsPanel ()
	CGenBankUIDataSource::CGenBankUIDataSource (CGenBankUIDataSourceType &type)
	CGenBankUIDataSource::~CGenBankUIDataSource ()
	CGenBankUIDataSourceType::CGenBankUIDataSourceType ()
	CGenBankUIDataSourceType. More...
	CGenBankUILoadManager::CGenBankUILoadManager ()
	CGenBankUILoadManager. More...
void	CGenBankUILoadManager::SaveMruAccessions ()
	CMergeTool::CMergeTool ()
	CCleanupTool. More...
virtual void	CMergeTool::x_SelectCompatibleInputObjects ()
	CSeqTextView::CSeqTextView ()
virtual void	CSeqTextView::x_OnSetSelection (CSelectionEvent &evt)
	override in derived classes in order to handle selection broadcast More...
virtual bool	CSeqTextView::x_MergeObjects (TConstScopedObjects &objects)
bool	CSeqTextViewFactory::x_NeedsConversion (const CObject &object, objects::CScope &scope)
	CSNPSearchTool::CSNPSearchTool ()
	IDMSearchTool. More...
virtual CRef< CSearchJobBase >	CSNPSearchTool::x_CreateJob (IDMSearchQuery &query)
	implementing CSearchToolBase pure virtual function More...
	CSNPSearchQuery::CSNPSearchQuery (const string &terms)
	CSNPSearchTool. More...
string	CSNPSearchQuery::GetTerms () const
virtual string	CSNPSearchQuery::ToString () const
	Prepare a string representation of a query (for logging and debugging) More...
	CSNPSearchForm::CSNPSearchForm ()
	CSNPSearchForm::CSNPSearchForm (CSNPSearchTool &tool)
	CSNPSearchForm. More...
	CSNPSearchJob::CSNPSearchJob (CSNPSearchQuery &query)
	CSNPSearchJob. More...
	CFeatTableView::DECLARE_EVENT_MAP ()
	CFeatTableView::CFeatTableView ()
	CFeatTableView. More...
void	CFeatTableView::x_OnFeatTableEvent (CEvent *)
void	CFeatTableView::x_InitMenuResources ()
virtual void	CFeatTableView::x_CreateMenuBarMenu ()
	initializes m_MenuBarMenu; override in derived classes More...
virtual void	CFeatTableView::x_OnSetSelection (CSelectionEvent &evt)
	override in derived classes in order to handle selection broadcast More...
virtual const CObject *	CFeatTableView::x_GetOrigObject () const
virtual void	CFeatTableView::x_Update ()
virtual void	CFeatTableView::x_UpdateStatusMessage ()
virtual void	CFeatTableView::x_RebuildObjectIndex ()
virtual void	CFeatTableView::x_SetVisibleRange (const objects::CSeq_loc &loc)
virtual bool	CFeatTableView::x_MergeObjects (TConstScopedObjects &objects)
bool	CFeatTableViewFactory::x_NeedsConversion (const CObject &object, objects::CScope &scope)
	CViewGraphic::DECLARE_EVENT_MAP ()
	CViewGraphic::CViewGraphic ()
	CViewGraphic::~CViewGraphic ()
void	CViewGraphic::OnWidgetDataChanged (CEvent *evt)
void	CViewGraphic::OnOpenGraphicalView (CEvent *evt)
virtual void	CViewGraphic::SetWorkbench (IWorkbench *workbench)
	IView implementation. More...
virtual CRef< objects::CSeq_loc >	CViewGraphic::GetSearchLoc ()
virtual CRef< objects::CScope >	CViewGraphic::GetSearchScope ()
virtual INonAsnTrackData *	CViewGraphic::GetNonAsnData ()
virtual set< string >	CViewGraphic::GetAnnotNames () const
void	CViewGraphic::x_UpdateVisRangeLayout (const IViewManagerService::TViews &views)
virtual bool	CViewGraphic::x_MergeObjects (TConstScopedObjects &objects)
string	CViewGraphic::x_GetViewSettingsFromParams (const objects::CUser_object *params)
void	CViewGraphic::x_SetNonAsnInput (const objects::CProjectFolder &prj_folder)
bool	CViewGraphicFactory::x_NeedsConversion (const CObject &object, objects::CScope &scope)
	CAutodefToolManager::CAutodefToolManager ()
	CAutodefToolManager. More...
CEditAppJob *	CAutodefToolManager::x_CreateEditJob ()
virtual void	CAutodefToolManager::x_SelectCompatibleInputObjects ()
	select only Seq-entries More...
	CAutodefJob::CAutodefJob (CProjectService *service, const SAutodefParams &params)
	CAutodefJob. More...
virtual void	CAutodefJob::x_MakeChanges ()
	override this function in derived classes, populate m_TextResult More...
	CSequinDesktopView::DECLARE_EVENT_MAP ()
	CSequinDesktopView::CSequinDesktopView ()
	CSequinDesktopView::~CSequinDesktopView ()
virtual void	CSequinDesktopView::x_OnSetSelection (CSelectionEvent &evt)
	override in derived classes in order to handle selection broadcast More...
void	CSequinDesktopView::x_OnRefreshData (CEvent *event)
void	CSequinDesktopView::x_OnSingleMouseClick (CEvent *event)
	Scrolls to the corresponding item in the Flat File View and selects it. More...
	CSrcEditParams::CSrcEditParams ()
	Default constructor for CSrcEditParams. More...
	CSrcEditParams::CSrcEditParams (const CSrcEditParams &data)
	Copy constructor for CSrcEditParams. More...
	CSrcEditParams::~CSrcEditParams ()
	Destructor for CSrcEditParams. More...
void	CSrcEditParams::operator= (const CSrcEditParams &data)
	Assignment operator for CSrcEditParams. More...
bool	CSrcEditParams::operator== (const CSrcEditParams &data) const
	Equality operator for CSrcEditParams. More...
void	CSrcEditParams::Copy (const CSrcEditParams &data)
	Copy function for CSrcEditParams. More...
void	CSrcEditParams::Init ()
	Initialises member variables. More...
virtual void	CSrcEditParams::SetRegistryPath (const string &path)
	IRegSettings. More...
virtual void	CSrcEditParams::SaveSettings () const
virtual void	CSrcEditParams::LoadSettings ()
const TConstScopedObjects &	CSrcEditParams::GetObjects () const
TConstScopedObjects &	CSrcEditParams::SetObjects ()
	CSrcEditTool::CSrcEditTool ()
	CSrcEditTool. More...
virtual void	CSrcEditTool::x_SelectCompatibleInputObjects ()
	C5ColObjectLoader::C5ColObjectLoader (const vector< wxString > &filenames)
	CAgpObjectLoader::CAgpObjectLoader (const CAgpLoadParams &params, const vector< wxString > &filenames)
	CAssemblyObjectLoader::CAssemblyObjectLoader (const vector< string > &accessions)
	CBedObjectLoader::CBedObjectLoader (const CBedLoadParams &params, const vector< wxString > &filenames)
void	CChainLoader::Add (IObjectLoader *loader)
	CFASTAFormatParamsPanel::CFASTAFormatParamsPanel ()
	CFASTAFormatParamsPanel. More...
	CFASTAFormatParamsPanel::CFASTAFormatParamsPanel (wxWindow *parent, wxWindowID id=ID_CFASTAFORMATPARAMSPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)
bool	CFASTAFormatParamsPanel::Create (wxWindow *parent, wxWindowID id=ID_CFASTAFORMATPARAMSPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)
	CFASTAFormatParamsPanel::~CFASTAFormatParamsPanel ()
void	CFASTAFormatParamsPanel::Init ()
void	CFASTAFormatParamsPanel::CreateControls ()
virtual bool	CFASTAFormatParamsPanel::TransferDataToWindow ()
virtual bool	CFASTAFormatParamsPanel::TransferDataFromWindow ()
CFastaLoadParams &	CFASTAFormatParamsPanel::GetData ()
	Data access. More...
const CFastaLoadParams &	CFASTAFormatParamsPanel::GetData () const
void	CFASTAFormatParamsPanel::SetData (const CFastaLoadParams &data)
wxBitmap	CFASTAFormatParamsPanel::GetBitmapResource (const wxString &name)
	Retrieves bitmap resources. More...
wxIcon	CFASTAFormatParamsPanel::GetIconResource (const wxString &name)
	Retrieves icon resources. More...
static bool	CFASTAFormatParamsPanel::ShowToolTips ()
	CFastaLoadParams::CFastaLoadParams ()
	Default constructor for CFastaLoadParams. More...
	CFastaLoadParams::CFastaLoadParams (const CFastaLoadParams &data)
	Copy constructor for CFastaLoadParams. More...
	CFastaLoadParams::~CFastaLoadParams ()
	Destructor for CFastaLoadParams. More...
void	CFastaLoadParams::operator= (const CFastaLoadParams &data)
	Assignment operator for CFastaLoadParams. More...
bool	CFastaLoadParams::operator== (const CFastaLoadParams &data) const
	Equality operator for CFastaLoadParams. More...
void	CFastaLoadParams::Copy (const CFastaLoadParams &data)
	Copy function for CFastaLoadParams. More...
void	CFastaLoadParams::Init ()
	Initialises member variables. More...
virtual void	CFastaLoadParams::SetRegistryPath (const string &path)
	IRegSettings. More...
virtual void	CFastaLoadParams::SaveSettings () const
	IRegSettings. More...
virtual void	CFastaLoadParams::LoadSettings ()
bool	CFastaLoadParams::GetForceLocalIDs () const
void	CFastaLoadParams::SetForceLocalIDs (bool value)
bool	CFastaLoadParams::GetIgnoreGaps () const
void	CFastaLoadParams::SetIgnoreGaps (bool value)
int	CFastaLoadParams::GetLowercaseOption () const
void	CFastaLoadParams::SetLowercaseOption (int value)
bool	CFastaLoadParams::GetMakeDelta () const
void	CFastaLoadParams::SetMakeDelta (bool value)
bool	CFastaLoadParams::GetNoSplit () const
void	CFastaLoadParams::SetNoSplit (bool value)
bool	CFastaLoadParams::GetReadFirst () const
void	CFastaLoadParams::SetReadFirst (bool value)
int	CFastaLoadParams::GetSeqType () const
void	CFastaLoadParams::SetSeqType (int value)
bool	CFastaLoadParams::GetSkipInvalid () const
void	CFastaLoadParams::SetSkipInvalid (bool value)
	CGBFlatFileObjectLoader::CGBFlatFileObjectLoader (const CGBFlatFileLoadParams &params)
	CGBFlatFileObjectLoader::CGBFlatFileObjectLoader (const CGBFlatFileLoadParams &params, const vector< wxString > &filenames)
void	CGBFlatFileObjectLoader::Init ()
	CGenBankLoadOptionPanel::CAccDescriptor::CAccDescriptor (const string &accession)
bool	CGenBankLoadOptionPanel::CAccDescriptor::operator== (const CAccDescriptor &ad) const
string	CGenBankLoadOptionPanel::CAccDescriptor::GetAccession () const
	CGenBankLoadOptionPanel::CGenBankLoadOptionPanel ()
	CGenBankLoadOptionPanel::CGenBankLoadOptionPanel (wxWindow *parent, wxWindowID id=ID_CGENBANKLOADOPTIONPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(266, 184), long style=wxTAB_TRAVERSAL)
bool	CGenBankLoadOptionPanel::Create (wxWindow *parent, wxWindowID id=ID_CGENBANKLOADOPTIONPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(266, 184), long style=wxTAB_TRAVERSAL)
	CGenBankLoadOptionPanel::~CGenBankLoadOptionPanel ()
void	CGenBankLoadOptionPanel::Init ()
void	CGenBankLoadOptionPanel::CreateControls ()
void	CGenBankLoadOptionPanel::OnAccInputUpdated (wxCommandEvent &event)
	wxEVT_COMMAND_TEXT_UPDATED event handler for ID_ACC_INPUT More...
void	CGenBankLoadOptionPanel::OnRecentAccClicked (wxHtmlLinkEvent &event)
	wxEVT_COMMAND_HTML_LINK_CLICKED event handler for ID_HTMLWINDOW2 More...
wxBitmap	CGenBankLoadOptionPanel::GetBitmapResource (const wxString &name)
	Retrieves bitmap resources. More...
wxIcon	CGenBankLoadOptionPanel::GetIconResource (const wxString &name)
	Retrieves icon resources. More...
static bool	CGenBankLoadOptionPanel::ShowToolTips ()
void	CGenBankLoadOptionPanel::SaveSettings (const string &regPath)
void	CGenBankLoadOptionPanel::LoadSettings (const string &regPath)
void	CGenBankLoadOptionPanel::SaveMruAccessions (const string &regPath)
string	CGenBankLoadOptionPanel::GetInput () const
void	CGenBankLoadOptionPanel::SetInput (const string &input)
bool	CGenBankLoadOptionPanel::IsInputValid ()
TIdsVec &	CGenBankLoadOptionPanel::GetSeqIds ()
const vector< string > &	CGenBankLoadOptionPanel::GetNAs () const
const vector< string > &	CGenBankLoadOptionPanel::GetGenomicAccessions () const
void	CGenBankLoadOptionPanel::x_ValidateInput ()
void	CGenBankLoadOptionPanel::x_FillMRUList ()
	CGenBankLoadOptionPanel::Token::Token ()
int	CGenBankLoadOptionPanel::x_ProccessText (const string &text, vector< Token > &tokens, ICanceled &canceled)
	CGBObjectLoader::CGBObjectLoader (const vector< CRef< CObject > > &ids, const vector< string > &NAs)
	CGffLoadParams::CGffLoadParams ()
	Default constructor for CGffLoadParams. More...
	CGffLoadParams::CGffLoadParams (const CGffLoadParams &data)
	Copy constructor for CGffLoadParams. More...
	CGffLoadParams::~CGffLoadParams ()
	Destructor for CGffLoadParams. More...
void	CGffLoadParams::operator= (const CGffLoadParams &data)
	Assignment operator for CGffLoadParams. More...
bool	CGffLoadParams::operator== (const CGffLoadParams &data) const
	Equality operator for CGffLoadParams. More...
void	CGffLoadParams::Copy (const CGffLoadParams &data)
	Copy function for CGffLoadParams. More...
void	CGffLoadParams::Init ()
	Initialises member variables. More...
virtual void	CGffLoadParams::SetRegistryPath (const string &path)
	IRegSettings. More...
virtual void	CGffLoadParams::SaveSettings () const
	IRegSettings. More...
virtual void	CGffLoadParams::LoadSettings ()
int	CGffLoadParams::GetFileFormat () const
void	CGffLoadParams::SetFileFormat (int value)
CMapAssemblyParams	CGffLoadParams::GetMapAssembly () const
void	CGffLoadParams::SetMapAssembly (CMapAssemblyParams value)
wxString	CGffLoadParams::GetNameFeatSet () const
void	CGffLoadParams::SetNameFeatSet (wxString value)
int	CGffLoadParams::GetParseSeqIds () const
void	CGffLoadParams::SetParseSeqIds (int value)
	CGffObjectLoader::CGffObjectLoader (const CGffLoadParams &params, const vector< wxString > &filenames)
	CGffParamsPanel::CGffParamsPanel ()
	Constructors. More...
	CGffParamsPanel::CGffParamsPanel (wxWindow *parent, wxWindowID id=ID_CGFFPARAMSPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 500), long style=wxTAB_TRAVERSAL)
bool	CGffParamsPanel::Create (wxWindow *parent, wxWindowID id=ID_CGFFPARAMSPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 500), long style=wxTAB_TRAVERSAL)
	Creation. More...
	CGffParamsPanel::~CGffParamsPanel ()
	Destructor. More...
void	CGffParamsPanel::Init ()
	Initialises member variables. More...
void	CGffParamsPanel::CreateControls ()
	Creates the controls and sizers. More...
virtual bool	CGffParamsPanel::TransferDataToWindow ()
virtual bool	CGffParamsPanel::TransferDataFromWindow ()
void	CGffParamsPanel::OnParseSeqIdNormalSelected (wxCommandEvent &event)
	wxEVT_COMMAND_RADIOBUTTON_SELECTED event handler for ID_SEQ_ID_NORMAL More...
void	CGffParamsPanel::OnParseSeqIdNumericSelected (wxCommandEvent &event)
	wxEVT_COMMAND_RADIOBUTTON_SELECTED event handler for IDSEQ_ID_NUMERIC More...
void	CGffParamsPanel::OnParseSeqIdLocalSelected (wxCommandEvent &event)
	wxEVT_COMMAND_RADIOBUTTON_SELECTED event handler for ID_SEQ_ID_LOCAL More...
CGffLoadParams &	CGffParamsPanel::GetData ()
	Data access. More...
const CGffLoadParams &	CGffParamsPanel::GetData () const
void	CGffParamsPanel::SetData (const CGffLoadParams &data)
wxBitmap	CGffParamsPanel::GetBitmapResource (const wxString &name)
	Retrieves bitmap resources. More...
wxIcon	CGffParamsPanel::GetIconResource (const wxString &name)
	Retrieves icon resources. More...
static bool	CGffParamsPanel::ShowToolTips ()
	Should we show tooltips? More...
void	CGffParamsPanel::x_SetParseSeqId (int val)
	CPhyObjectLoader::CPhyObjectLoader (const vector< wxString > &filenames)
	CPslObjectLoader::CPslObjectLoader (const CPslLoadParams &params, const vector< wxString > &filenames)
	CVcfObjectLoader::CVcfObjectLoader (const CBedLoadParams &params, const vector< wxString > &filenames)
	CWigObjectLoader::CWigObjectLoader (const CWigLoadParams &params, const vector< wxString > &filenames)
	CPhyLoader::CPhyLoader ()
	CPhyLoader. More...
static string	CPhyLoader::Id ()
static string	CPhyLoader::Label ()
	CRMLoader::CRMLoader ()
	CRMLoader. More...
static string	CRMLoader::Id ()
static string	CRMLoader::Label ()
	C5ColLoadManager::C5ColLoadManager ()
	C5ColLoadManager. More...
static string	C5ColLoadManager::Id ()
static string	C5ColLoadManager::Label ()
	CAgpLoader::CAgpLoader ()
	CAgpLoader. More...
static string	CAgpLoader::Id ()
static string	CAgpLoader::Label ()
	CAgpLoader::CPage::CPage (CAgpLoader &manager)
virtual wxPanel *	CAgpLoader::CPage::GetPanel ()
virtual bool	CAgpLoader::CPage::CanLeavePage (bool)
CAgpLoadPage *	CAgpLoader::x_GetParamsPanel ()
	CBedLoadManager::CBedLoadManager ()
	CBedLoadManager. More...
static string	CBedLoadManager::Id ()
static string	CBedLoadManager::Label ()
	CBedLoadManager::CPage::CPage (CBedLoadManager &manager)
virtual wxPanel *	CBedLoadManager::CPage::GetPanel ()
virtual bool	CBedLoadManager::CPage::CanLeavePage (bool)
CBedParamsPanel *	CBedLoadManager::x_GetParamsPanel ()
	CColumnarVCFLoaderManager::CColumnarVCFLoaderManager ()
	CColumnarVCFLoaderManager. More...
static string	CColumnarVCFLoaderManager::Id ()
static string	CColumnarVCFLoaderManager::Label ()
void	CColumnarVCFLoaderManager::x_GetRefSeqs ()
	CComponentSearchTool::CComponentSearchTool ()
	IDMSearchTool. More...
virtual CRef< CSearchJobBase >	CComponentSearchTool::x_CreateJob (IDMSearchQuery &query)
	implementing CSearchToolBase pure virtual function More...
	CComponentSearchQuery::CComponentSearchQuery (TScopedLocs &locs, const string &ids)
	CComponentSearchQuery. More...
string	CComponentSearchQuery::GetIds () const
virtual string	CComponentSearchQuery::ToString () const
	Prepare a string representation of a query (for logging and debugging) More...
	CComponentSearchForm::CComponentSearchForm (CComponentSearchTool &tool)
	CComponentSearchForm. More...
virtual CIRef< IDMSearchQuery >	CComponentSearchForm::ConstructQuery ()
virtual wxSizer *	CComponentSearchForm::GetWidget (wxWindow *parent)
	return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget) More...
virtual void	CComponentSearchForm::UpdateContexts ()
	updates m_ContextCombo More...
virtual void	CComponentSearchForm::x_LoadSettings (const CRegistryReadView &)
virtual void	CComponentSearchForm::x_SaveSettings (CRegistryWriteView) const
	CComponentSearchJob::CComponentSearchJob (CComponentSearchQuery &query)
	CComponentSearchJob. More...
void	CComponentSearchJob::x_AddToResults (CObject &obj, objects::CScope &scope, const string &loc_name, const string &ctx_name)
	CCpgSearchTool::CCpgSearchTool ()
	CCpgSearchTool. More...
virtual CRef< CSearchJobBase >	CCpgSearchTool::x_CreateJob (IDMSearchQuery &query)
	implementing CSearchToolBase pure virtual function More...
	CCpgSearchQuery::CCpgSearchQuery (TScopedLocs &locs, const string &xSizeOfSlidingWindow, const string &xMinLenOfIsland, const string &xMinGC, const string &xMinPercentage, const string &xAdjMergeThreshold)
	CCpgSearchQuery. More...
string	CCpgSearchQuery::GetSizeOfSlidingWindow ()
string	CCpgSearchQuery::GetMinLenOfIsland ()
string	CCpgSearchQuery::GetMinGC ()
string	CCpgSearchQuery::GetMinPercentage ()
string	CCpgSearchQuery::GetAdjMergeThreshold ()
virtual string	CCpgSearchQuery::ToString () const
	Prepare a string representation of a query (for logging and debugging) More...
	CCpgSearchForm::CCpgSearchForm (CCpgSearchTool &tool)
	CCpgSearchForm. More...
	CCpgSearchForm::~CCpgSearchForm ()
virtual CIRef< IDMSearchQuery >	CCpgSearchForm::ConstructQuery ()
virtual wxSizer *	CCpgSearchForm::GetWidget (wxWindow *parent)
	return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget) More...
virtual void	CCpgSearchForm::UpdateContexts ()
	updates m_ContextCombo More...
virtual void	CCpgSearchForm::x_LoadSettings (const CRegistryReadView &view)
virtual void	CCpgSearchForm::x_SaveSettings (CRegistryWriteView view) const
virtual IDMSearchTool *	CCpgSearchForm::x_GetTool ()
	CCpgSearchJob::CCpgSearchJob (CCpgSearchQuery &query)
	CCpgSearchJob. More...
void	CCpgSearchJob::x_AddToResults (CObject &obj, objects::CScope &scope, const string &loc_name, int start, int stop, int length, int gc, const string &ctx_name)
	CEntrezSearchTool::CEntrezSearchTool ()
	IDMSearchTool. More...
void	CEntrezSearchTool::GetDbNames (vector< string > &name)
virtual CRef< CSearchJobBase >	CEntrezSearchTool::x_CreateJob (IDMSearchQuery &query)
	implementing CSearchToolBase pure virtual function More...
	CEntrezSearchQuery::CEntrezSearchQuery (const string &terms, const string &db_name)
	CEntrezSearchTool. More...
string	CEntrezSearchQuery::GetTerms () const
string	CEntrezSearchQuery::GetDbName () const
virtual string	CEntrezSearchQuery::ToString () const
	Prepare a string representation of a query (for logging and debugging) More...
	CEntrezSearchForm::CEntrezSearchForm ()
	CEntrezSearchForm::CEntrezSearchForm (CEntrezSearchTool &tool)
	CEntrezSearchForm. More...
virtual void	CEntrezSearchForm::SetDictionary (list< string > *)
virtual void	CEntrezSearchForm::SetMainValue (string)
	CEntrezSearchJob::CEntrezSearchJob (CEntrezSearchQuery &query)
	CEntrezSearchJob. More...
void	CEntrezSearchJob::SetReleaseType (xml::node &ds)
	Adds an additional child node, indicating the release type (RefSeq or GenBank) More...
	CFASTAFormatLoadManager::CFASTAFormatLoadManager ()
	CFASTAFormatLoadManager. More...
static string	CFASTAFormatLoadManager::Id ()
static string	CFASTAFormatLoadManager::Label ()
	CFASTAFormatLoadManager::CPage::CPage (CFASTAFormatLoadManager &manager)
virtual wxPanel *	CFASTAFormatLoadManager::CPage::GetPanel ()
virtual bool	CFASTAFormatLoadManager::CPage::CanLeavePage (bool)
CFASTAFormatParamsPanel *	CFASTAFormatLoadManager::x_GetParamsPanel ()
	CFeatureSearchTool::CFeatureSearchTool ()
	CFeatureSearchTool. More...
virtual CRef< CSearchJobBase >	CFeatureSearchTool::x_CreateJob (IDMSearchQuery &query)
	implementing CSearchToolBase pure virtual function More...
	CFeatureSearchQuery::CFeatureSearchQuery (TScopedLocs &locs, const string &pattern, bool case_sensitive, TPatternType pt_type, const TFeatTypeItemSet &feat_types)
	CFeatureSearchQuery. More...
string	CFeatureSearchQuery::GetPattern ()
TPatternType	CFeatureSearchQuery::GetPatternType ()
bool	CFeatureSearchQuery::GetCaseSensitive ()
const TFeatTypeItemSet &	CFeatureSearchQuery::GetFeatTypes ()
virtual string	CFeatureSearchQuery::ToString () const
	Prepare a string representation of a query (for logging and debugging) More...
	CFeatureSearchForm::CFeatureSearchForm (CFeatureSearchTool &tool)
	CFeatureSearchForm::~CFeatureSearchForm ()
virtual CIRef< IDMSearchQuery >	CFeatureSearchForm::ConstructQuery ()
virtual wxSizer *	CFeatureSearchForm::GetWidget (wxWindow *parent)
	return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget) More...
	CFeatureSearchJob::CFeatureSearchJob (CFeatureSearchQuery &query)
	CFeatureSearchJob. More...
string	CFeatureSearchJob::SeqLocToString (const objects::CSeq_loc &loc)
void	CFeatureSearchJob::x_SearchFeatures (TScopedLocs &scoped_locs, const TFeatTypeItemSet &feat_types)
bool	CFeatureSearchJob::x_Match (const string &text) const
bool	CFeatureSearchJob::x_Match (const objects::CGene_ref &gene_ref) const
	genes have a lot of embedded labels. More...
void	CFeatureSearchJob::x_AddFeatToResults (const objects::CSeq_feat &feat, objects::CScope &scope, const string &loc_label, const int cnt, const int cnt_found, const string &ctx_name)
void	CFeatureSearchJob::x_AddToResults (CObject &obj, objects::CScope &scope, const string &loc_name, const string &strand, const string &acc_name, const string &ctx_name)
bool	CFeatureSearchJob::x_IsSNP () const
objects::CSeq_feat_Handle	CFeatureSearchJob::x_SearchForSNP (const objects::CSeq_loc &seq_loc, objects::CScope &scope, const set< string > &annot_names)
	CGffLoadManager::CGffLoadManager ()
	CGffLoadManager. More...
static string	CGffLoadManager::Id ()
static string	CGffLoadManager::Label ()
	CGffLoadManager::CPage::CPage (CGffLoadManager &manager)
virtual wxPanel *	CGffLoadManager::CPage::GetPanel ()
virtual bool	CGffLoadManager::CPage::CanLeavePage (bool)
CGffParamsPanel *	CGffLoadManager::x_GetParamsPanel ()
	COrfSearchTool::COrfSearchTool ()
	COrfSearchTool. More...
virtual CRef< CSearchJobBase >	COrfSearchTool::x_CreateJob (IDMSearchQuery &query)
	implementing CSearchToolBase pure virtual function More...
	COrfSearchQuery::COrfSearchQuery (TScopedLocs &locs, const string &gc, const string &so, const string &mp)
	COrfSearchQuery. More...
string	COrfSearchQuery::GetGencode ()
string	COrfSearchQuery::GetStartOrf ()
string	COrfSearchQuery::GetMinPairs ()
virtual string	COrfSearchQuery::ToString () const
	Prepare a string representation of a query (for logging and debugging) More...
	COrfSearchForm::SKozakPattern::SKozakPattern (const string &name, const string &regexp, int codon_pos)
	COrfSearchForm::COrfSearchForm (COrfSearchTool &tool)
	COrfSearchForm. More...
	COrfSearchForm::~COrfSearchForm ()
virtual CIRef< IDMSearchQuery >	COrfSearchForm::ConstructQuery ()
virtual wxSizer *	COrfSearchForm::GetWidget (wxWindow *parent)
	return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget) More...
virtual void	COrfSearchForm::x_LoadSettings (const CRegistryReadView &view)
virtual void	COrfSearchForm::x_SaveSettings (CRegistryWriteView view) const
virtual IDMSearchTool *	COrfSearchForm::x_GetTool ()
void	COrfSearchForm::x_UpdateKozak ()
	COrfSearchJob::COrfSearchJob (COrfSearchQuery &query, const COrfSearchForm::TKozakList &kozakList)
	COrfSearchJob. More...
int	COrfSearchJob::x_DecodeGeneticCode (const string &s)
void	COrfSearchJob::x_AddToResults (CObject &obj, objects::CScope &scope, int start, int stop, const string &strand, int length, int p_length, const string &start_cdn, const string &stop_cdn, const string &translated_seq, const string &nucleotide_seq, const string &start_context, const string &ctx_name, const string &kozak, int k_loc, int color)
	CSequenceSearchTool::CSequenceSearchTool ()
	CSequenceSearchTool. More...
virtual CRef< CSearchJobBase >	CSequenceSearchTool::x_CreateJob (IDMSearchQuery &query)
	implementing CSearchToolBase pure virtual function More...
	CSequenceSearchQuery::CSequenceSearchQuery (TScopedLocs &locs, const string &pattern, TPatternType pt_type, const string &file)
	CSequenceSearchQuery. More...
string	CSequenceSearchQuery::GetPattern ()
string	CSequenceSearchQuery::GetPatternFile ()
TPatternType	CSequenceSearchQuery::GetPatternType ()
virtual string	CSequenceSearchQuery::ToString () const
	Prepare a string representation of a query (for logging and debugging) More...
	CSequenceSearchForm::CSequenceSearchForm (CSequenceSearchTool &tool)
	CSequenceSearchForm::~CSequenceSearchForm ()
virtual CIRef< IDMSearchQuery >	CSequenceSearchForm::ConstructQuery ()
virtual wxSizer *	CSequenceSearchForm::GetWidget (wxWindow *parent)
	return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget) More...
virtual void	CSequenceSearchForm::x_LoadSettings (const CRegistryReadView &view)
virtual void	CSequenceSearchForm::x_SaveSettings (CRegistryWriteView view) const
virtual IDMSearchTool *	CSequenceSearchForm::x_GetTool ()
virtual void	CSequenceSearchForm::UpdateContexts ()
	updates m_ContextCombo More...
void	CSequenceSearchForm::x_UpdateFileList (void)
	CSequenceSearchJob::CSequenceSearchJob (CSequenceSearchQuery &query)
	CSequenceSearchJob. More...
IAppJob::EJobState	CSequenceSearchJob::x_SearchSequence (TScopedLocs &scoped_locs)
void	CSequenceSearchJob::x_GetMatches (const string &data, int start, TRangeCollection &coll, bool reverse)
	"offset" argument defines the sequence position corresponding to the fisrt character in "data" More...
bool	CSequenceSearchJob::x_Match (const string &text)
void	CSequenceSearchJob::x_GetSequence (objects::CSeqVector &vec, const CRange< TSeqPos > &range, string *s)
void	CSequenceSearchJob::x_AddToResults (CObject &obj, objects::CScope &scope, const string &sequence, const string &loc_name, const string &strand, const string &ctx_name)
	CTextView::CTextView ()
	CTextView::~CTextView ()
virtual void	CTextView::x_OnSetSelection (CSelectionEvent &evt)
	override in derived classes in order to handle selection broadcast More...
	CVCFLoaderManager::CVCFLoaderManager ()
	CVCFLoaderManager. More...
static string	CVCFLoaderManager::Id ()
static string	CVCFLoaderManager::Label ()
	CVCFLoaderManager::CPage::CPage (CVCFLoaderManager &manager)
virtual wxPanel *	CVCFLoaderManager::CPage::GetPanel ()
virtual bool	CVCFLoaderManager::CPage::CanLeavePage (bool)
CBedParamsPanel *	CVCFLoaderManager::x_GetParamsPanel ()
	CVcfSearchTool::CVcfSearchTool ()
	IDMSearchTool. More...
virtual CRef< CSearchJobBase >	CVcfSearchTool::x_CreateJob (IDMSearchQuery &query)
	implementing CSearchToolBase pure virtual function More...
	CVcfSearchQuery::CVcfSearchQuery (vector< ISeqLocSearchContext * > VcfContexts, const string &ids)
	CVcfSearchQuery. More...
const vector< ISeqLocSearchContext * > &	CVcfSearchQuery::GetVcfContexts () const
string	CVcfSearchQuery::GetIds () const
virtual string	CVcfSearchQuery::ToString () const
	Prepare a string representation of a query (for logging and debugging) More...
	CVcfSearchForm::CVcfSearchForm (CVcfSearchTool &tool)
	CVcfSearchForm. More...
virtual CIRef< IDMSearchQuery >	CVcfSearchForm::ConstructQuery ()
virtual wxSizer *	CVcfSearchForm::GetWidget (wxWindow *parent)
	return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget) More...
virtual void	CVcfSearchForm::UpdateContexts ()
	updates m_ContextCombo More...
virtual void	CVcfSearchForm::x_LoadSettings (const CRegistryReadView &)
virtual void	CVcfSearchForm::x_SaveSettings (CRegistryWriteView) const
	CVcfSearchJob::CVcfSearchJob (CVcfSearchQuery &query)
	CVcfSearchJob. More...
	CWigLoadManager::CWigLoadManager ()
	CWigLoadManager. More...
static string	CWigLoadManager::Id ()
static string	CWigLoadManager::Label ()
	CWigLoadManager::CPage::CPage (CWigLoadManager &manager)
virtual wxPanel *	CWigLoadManager::CPage::GetPanel ()
virtual bool	CWigLoadManager::CPage::CanLeavePage (bool)
CWigParamsPanel *	CWigLoadManager::x_GetParamsPanel ()
	CResolveIdDlg::CResolveIdDlg ()
	Constructors. More...
	CResolveIdDlg::CResolveIdDlg (wxWindow *parent, wxWindowID id=ID_CRESOLVEIDDLG, const wxString &caption=_("Check Sequence Identifiers"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL)
bool	CResolveIdDlg::Create (wxWindow *parent, wxWindowID id=ID_CRESOLVEIDDLG, const wxString &caption=_("Check Sequence Identifiers"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL)
	Creation. More...
	CResolveIdDlg::~CResolveIdDlg ()
	Destructor. More...
void	CResolveIdDlg::Init ()
	Initialises member variables. More...
void	CResolveIdDlg::SetData (const TData &data, TIdMap &map, objects::CScope &scope)
void	CResolveIdDlg::CreateControls ()
	Creates the controls and sizers. More...
wxBitmap	CResolveIdDlg::GetBitmapResource (const wxString &name)
	Retrieves bitmap resources. More...
wxIcon	CResolveIdDlg::GetIconResource (const wxString &name)
	Retrieves icon resources. More...
static bool	CResolveIdDlg::ShowToolTips ()
	Should we show tooltips? More...
virtual void	CResolveIdDlg::x_LoadSettings (const CRegistryReadView &view)
	override these functions in derived classes More...
virtual void	CResolveIdDlg::x_SaveSettings (CRegistryWriteView view) const

Variables
CObjectListWidget *	CCleanupPanel::m_ObjectList
CCleanupParams	CCleanupPanel::m_data
	The data edited by this window. More...
TConstScopedObjects *	CCleanupPanel::m_InputObjects
int	CCleanupParams::m_CleanupMode
string	CCleanupParams::m_RegPath
TConstScopedObjects	CCleanupParams::m_Objects
TConstScopedObjects	CCleanupTool::m_Objects
CCleanupParams	CCleanupTool::m_Params
CCleanupPanel *	CCleanupTool::m_Panel
CGBFlatFileLoadManager &	CGBFlatFileLoadManager::CPage::m_Manager
CUIObject	CGBFlatFileLoadManager::m_Descr
IServiceLocator *	CGBFlatFileLoadManager::m_SrvLocator { nullptr }
wxWindow *	CGBFlatFileLoadManager::m_ParentWindow { nullptr }
string	CGBFlatFileLoadManager::m_RegPath
EState	CGBFlatFileLoadManager::m_State { CGBFlatFileLoadManager::eInvalid }
CGBFlatFileParamsPanel *	CGBFlatFileLoadManager::m_ParamsPanel { nullptr }
CGBFlatFileLoadParams	CGBFlatFileLoadManager::m_Params
vector< wxString >	CGBFlatFileLoadManager::m_FileNames
CPage	CGBFlatFileLoadManager::m_OptionsPage
CRef< CGenBankUIDataSourceType >	CGenBankUIDataSource::m_Type
CRef< objects::CObjectManager >	CGenBankUIDataSource::m_ObjMgr
CUIObject	CGenBankUIDataSource::m_Descr
IServiceLocator *	CGenBankUIDataSource::m_SrvLocator
bool	CGenBankUIDataSource::m_Open
CUIObject	CGenBankUIDataSourceType::m_Descr
IServiceLocator *	CGenBankUILoadManager::m_SrvLocator
wxWindow *	CGenBankUILoadManager::m_ParentWindow
CUIObject	CGenBankUILoadManager::m_Descriptor
EState	CGenBankUILoadManager::m_State
string	CGenBankUILoadManager::m_RegPath
CGenBankLoadOptionPanel *	CGenBankUILoadManager::m_OptionPanel
CProjectSelectorPanel *	CGenBankUILoadManager::m_ProjectSelPanel
SProjectSelectorParams	CGenBankUILoadManager::m_ProjectParams
map< string, TConstScopedObjects >	CMergeTool::m_Objects
CMergeParams	CMergeTool::m_Params
CMergePanel *	CMergeTool::m_Panel
wxWindow *	CSeqTextView::m_Window
CConstRef< CObject >	CSeqTextView::m_OrigObj
string	CSNPSearchQuery::m_Terms
CRef< CSNPSearchQuery >	CSNPSearchJob::m_Query
CConstRef< CSerialObject >	CFeatTableView::m_OrigObject
	original data object passed to the view More...
CRef< objects::CScope >	CFeatTableView::m_Scope
CObjectIndex	CFeatTableView::m_ObjectIndex
wxPanel *	CFeatTableView::m_Panel
wxStatusBar *	CFeatTableView::m_StatusBar
CFeatTableWidget *	CFeatTableView::m_FTblWidget
CRef< CFeatTableDS >	CFeatTableView::m_DataSource
string	CFeatTableView::m_RegPath
CConstRef< objects::CSeq_id >	CViewGraphic::m_SeqId
CGraphicPanel *	CViewGraphic::m_GraphicPanel
CIRef< INonAsnTrackData >	CViewGraphic::m_NonAsnTrackData
TConstScopedObjects	CAutodefToolManager::m_SeqEntries
SAutodefParams	CAutodefToolManager::m_Params
CAutodefParamsPanel *	CAutodefToolManager::m_ParamsPanel
SAutodefParams	CAutodefJob::m_Params
CSeqDesktopPanel *	CSequinDesktopView::m_Window
string	CSrcEditParams::m_RegPath
TConstScopedObjects	CSrcEditParams::m_Objects
TConstScopedObjects	CSrcEditTool::m_Objects
CSrcEditParams	CSrcEditTool::m_Params
CSrcEditPanel *	CSrcEditTool::m_Panel
vector< wxString >	C5ColObjectLoader::m_FileNames
TObjects	C5ColObjectLoader::m_Objects
CAgpLoadParams	CAgpObjectLoader::m_Params
vector< wxString >	CAgpObjectLoader::m_FileNames
TObjects	CAgpObjectLoader::m_Objects
vector< string >	CAssemblyObjectLoader::m_Accessions
TObjects	CAssemblyObjectLoader::m_Objects
string	CAssemblyObjectLoader::m_Descr
CBedLoadParams	CBedObjectLoader::m_Params
vector< wxString >	CBedObjectLoader::m_FileNames
TObjects	CBedObjectLoader::m_Objects
wxString	CBedObjectLoader::m_CurrentFile
vector< CIRef< IObjectLoader > >	CChainLoader::m_Loaders
vector< CIRef< IExecuteUnit > >	CChainLoader::m_ExecuteUnits
TObjects	CChainLoader::m_Objects
CFastaLoadParams	CFASTAFormatParamsPanel::m_data
	@begin CFASTAFormatParamsPanel member variables More...
bool	CFastaLoadParams::m_ForceLocalIDs
bool	CFastaLoadParams::m_IgnoreGaps
int	CFastaLoadParams::m_LowercaseOption
bool	CFastaLoadParams::m_MakeDelta
bool	CFastaLoadParams::m_NoSplit
bool	CFastaLoadParams::m_ReadFirst
int	CFastaLoadParams::m_SeqType
bool	CFastaLoadParams::m_SkipInvalid
string	CFastaLoadParams::m_RegPath
CGBFlatFileLoadParams	CGBFlatFileObjectLoader::m_Params
vector< wxString >	CGBFlatFileObjectLoader::m_FileNames
TObjects	CGBFlatFileObjectLoader::m_Objects
CRef< objects::CScope >	CGBFlatFileObjectLoader::m_Scope
string	CGenBankLoadOptionPanel::CAccDescriptor::m_Accession
CRichTextCtrl *	CGenBankLoadOptionPanel::m_AccInput
CwxHtmlWindow *	CGenBankLoadOptionPanel::m_MRUWindow
int	CGenBankLoadOptionPanel::Token::m_Pos
int	CGenBankLoadOptionPanel::Token::m_Size
bool	CGenBankLoadOptionPanel::Token::m_Valid
bool	CGenBankLoadOptionPanel::Token::m_GenomicAccession
wxTextAttr	CGenBankLoadOptionPanel::m_DefStyle
wxTextAttr	CGenBankLoadOptionPanel::m_ErrStyle
int	CGenBankLoadOptionPanel::m_TokensNum
int	CGenBankLoadOptionPanel::m_ErrNum
TIdsVec	CGenBankLoadOptionPanel::m_Ids
vector< string >	CGenBankLoadOptionPanel::m_NAs
vector< string >	CGenBankLoadOptionPanel::m_GenomicAccessions
vector< string >	CGenBankLoadOptionPanel::m_ValidTokens
TMRUAccList	CGenBankLoadOptionPanel::m_AccMRUList
vector< CRef< CObject > >	CGBObjectLoader::m_Ids
vector< string >	CGBObjectLoader::m_NAs
TObjects	CGBObjectLoader::m_Objects
int	CGffLoadParams::m_FileFormat
CMapAssemblyParams	CGffLoadParams::m_MapAssembly
wxString	CGffLoadParams::m_NameFeatSet
int	CGffLoadParams::m_ParseSeqIds
string	CGffLoadParams::m_RegPath
CGffLoadParams	CGffObjectLoader::m_Params
vector< wxString >	CGffObjectLoader::m_FileNames
TObjects	CGffObjectLoader::m_Objects
CAssemblySelPanel *	CGffParamsPanel::m_AssemblyPanel
CGffLoadParams	CGffParamsPanel::m_data
	The data edited by this window. More...
vector< wxString >	CPhyObjectLoader::m_FileNames
TObjects	CPhyObjectLoader::m_Objects
CPslLoadParams	CPslObjectLoader::m_Params
vector< wxString >	CPslObjectLoader::m_FileNames
TObjects	CPslObjectLoader::m_Objects
CBedLoadParams	CVcfObjectLoader::m_Params
vector< wxString >	CVcfObjectLoader::m_FileNames
TObjects	CVcfObjectLoader::m_Objects
CWigLoadParams	CWigObjectLoader::m_Params
vector< wxString >	CWigObjectLoader::m_FileNames
TObjects	CWigObjectLoader::m_Objects
CUIObject	CPhyLoader::m_Descr
IServiceLocator *	CPhyLoader::m_SrvLocator
wxWindow *	CPhyLoader::m_ParentWindow
string	CPhyLoader::m_RegPath
vector< wxString >	CPhyLoader::m_FileNames
CUIObject	CRMLoader::m_Descr
IServiceLocator *	CRMLoader::m_SrvLocator
wxWindow *	CRMLoader::m_ParentWindow
vector< wxString >	CRMLoader::m_FileNames
IServiceLocator *	C5ColLoadManager::m_SrvLocator
string	C5ColLoadManager::m_RegPath
vector< wxString >	C5ColLoadManager::m_FileNames
CUIObject	C5ColLoadManager::m_Descr
CAgpLoader &	CAgpLoader::CPage::m_Manager
CUIObject	CAgpLoader::m_Descr
IServiceLocator *	CAgpLoader::m_SrvLocator
wxWindow *	CAgpLoader::m_ParentWindow
EState	CAgpLoader::m_State
string	CAgpLoader::m_RegPath
CAgpLoadPage *	CAgpLoader::m_ParamsPanel
CAgpLoadParams	CAgpLoader::m_Params
vector< wxString >	CAgpLoader::m_FileNames
CPage	CAgpLoader::m_OptionsPage
CBedLoadManager &	CBedLoadManager::CPage::m_Manager
CUIObject	CBedLoadManager::m_Descr
IServiceLocator *	CBedLoadManager::m_SrvLocator
wxWindow *	CBedLoadManager::m_ParentWindow
EState	CBedLoadManager::m_State
string	CBedLoadManager::m_RegPath
CBedParamsPanel *	CBedLoadManager::m_ParamsPanel
CBedLoadParams	CBedLoadManager::m_Params
vector< wxString >	CBedLoadManager::m_FileNames
CPage	CBedLoadManager::m_OptionsPage
CUIObject	CColumnarVCFLoaderManager::m_Descr
IServiceLocator *	CColumnarVCFLoaderManager::m_SrvLocator { nullptr }
wxWindow *	CColumnarVCFLoaderManager::m_ParentWindow { nullptr }
EState	CColumnarVCFLoaderManager::m_State
string	CColumnarVCFLoaderManager::m_RegPath
vector< wxString >	CColumnarVCFLoaderManager::m_FileNames
string	CColumnarVCFLoaderManager::m_AssmAcc
CRef< objects::CGC_Assembly >	CColumnarVCFLoaderManager::m_GenCollAssm
vector< CConstRef< objects::CSeq_id > >	CColumnarVCFLoaderManager::m_RefSeqIds
map< string, set< string > >	CColumnarVCFLoaderManager::m_MappedSeqIds
size_t	CColumnarVCFLoaderManager::m_TopLevelSeqCount = 0
CVcfRefSequencesPanel *	CColumnarVCFLoaderManager::m_RefSequencesPanel
CVcfColumnSelectionPanel *	CColumnarVCFLoaderManager::m_ColumnsPanel
CVcfSampleSelectionPanel *	CColumnarVCFLoaderManager::m_SamplesPanel
CVcfAssemblySelectionPanel *	CColumnarVCFLoaderManager::m_AssemblyPanel
CColumnarVCFReader	CColumnarVCFLoaderManager::m_VCFreader
TScopedLocs	CComponentSearchQuery::m_ScopedLocs
string	CComponentSearchQuery::m_Ids
CRef< CComponentSearchTool >	CComponentSearchForm::m_Tool
wxChoice *	CComponentSearchForm::m_DbCombo
vector< ISeqLocSearchContext * >	CComponentSearchForm::m_SeqLocContexts
CRef< CComponentSearchQuery >	CComponentSearchJob::m_Query
string	CCpgSearchQuery::m_SizeOfSlidingWindow
string	CCpgSearchQuery::m_MinLenOfIsland
string	CCpgSearchQuery::m_MinGC
string	CCpgSearchQuery::m_MinPercentage
string	CCpgSearchQuery::m_AdjMergeThreshold
CRef< CCpgSearchTool >	CCpgSearchForm::m_Tool
wxChoice *	CCpgSearchForm::m_DbCombo
wxTextCtrl *	CCpgSearchForm::m_SizeOfSlidingWindowCtl
wxTextCtrl *	CCpgSearchForm::m_MinLenOfIslandCtl
wxTextCtrl *	CCpgSearchForm::m_MinGCCtl
wxTextCtrl *	CCpgSearchForm::m_MinPercentageCtl
wxTextCtrl *	CCpgSearchForm::m_AdjMergeThresholdCtl
vector< ISeqLocSearchContext * >	CCpgSearchForm::m_SeqLocContexts
string	CCpgSearchForm::m_SizeOfSlidingWindow
string	CCpgSearchForm::m_MinLenOfIsland
string	CCpgSearchForm::m_MinGC
string	CCpgSearchForm::m_MinPercentage
string	CCpgSearchForm::m_AdjMergeThreshold
CRef< CCpgSearchQuery >	CCpgSearchJob::m_Query
string	CEntrezSearchQuery::m_Terms
string	CEntrezSearchQuery::m_DbName
CRef< CEntrezSearchQuery >	CEntrezSearchJob::m_Query
CFASTAFormatLoadManager &	CFASTAFormatLoadManager::CPage::m_Manager
CUIObject	CFASTAFormatLoadManager::m_Descr
IServiceLocator *	CFASTAFormatLoadManager::m_SrvLocator
wxWindow *	CFASTAFormatLoadManager::m_ParentWindow
EState	CFASTAFormatLoadManager::m_State
string	CFASTAFormatLoadManager::m_RegPath
CFASTAFormatParamsPanel *	CFASTAFormatLoadManager::m_ParamsPanel
CFastaLoadParams	CFASTAFormatLoadManager::m_Params
vector< wxString >	CFASTAFormatLoadManager::m_FileNames
CPage	CFASTAFormatLoadManager::m_OptionsPage
string	CFeatureSearchQuery::m_Pattern
TPatternType	CFeatureSearchQuery::m_PatternType
bool	CFeatureSearchQuery::m_CaseSensitive
TFeatTypeItemSet	CFeatureSearchQuery::m_FeatTypesSet
set< string >	CFeatureSearchQuery::m_AnnotNames
	Feature types to search. More...
CRef< CFeatureSearchQuery >	CFeatureSearchJob::m_Query
TPatternType	CFeatureSearchJob::m_PatternType
string	CFeatureSearchJob::m_SearchStr
CRegexp *	CFeatureSearchJob::m_Pattern
	search patteern for "Exact Match" and "Wildcard" modes More...
bool	CFeatureSearchJob::m_CaseSensitive
	regular expression to apply More...
CGffLoadManager &	CGffLoadManager::CPage::m_Manager
IServiceLocator *	CGffLoadManager::m_SrvLocator
wxWindow *	CGffLoadManager::m_ParentWindow
EState	CGffLoadManager::m_State
string	CGffLoadManager::m_RegPath
CGffParamsPanel *	CGffLoadManager::m_ParamsPanel
CGffLoadParams	CGffLoadManager::m_Params
vector< wxString >	CGffLoadManager::m_FileNames
CUIObject	CGffLoadManager::m_Descr
CPage	CGffLoadManager::m_OptionsPage
string	COrfSearchQuery::m_Gencode
string	COrfSearchQuery::m_StartOrf
string	COrfSearchQuery::m_MinPairs
string	COrfSearchForm::SKozakPattern::m_Name
string	COrfSearchForm::SKozakPattern::m_Regexp
int	COrfSearchForm::SKozakPattern::m_Codon_pos
static TKozakList	COrfSearchForm::m_Kozak
CRef< COrfSearchTool >	COrfSearchForm::m_Tool
wxChoice *	COrfSearchForm::m_DbCombo
wxChoice *	COrfSearchForm::m_GencodeCombo
wxChoice *	COrfSearchForm::m_StartorfCombo
wxTextCtrl *	COrfSearchForm::m_BasepairsText
vector< ISeqLocSearchContext * >	COrfSearchForm::m_SeqLocContexts
string	COrfSearchForm::m_Gencode
string	COrfSearchForm::m_StartOrf
string	COrfSearchForm::m_MinPairs
CRef< COrfSearchQuery >	COrfSearchJob::m_Query
int	COrfSearchJob::m_ColorCol
COrfSearchForm::TKozakList	COrfSearchJob::m_KozakList
string	CSequenceSearchQuery::m_Pattern
TPatternType	CSequenceSearchQuery::m_PatternType
string	CSequenceSearchQuery::m_PatternFile
static TFileList	CSequenceSearchForm::m_FileList
	CSequenceSearchForm. More...
CRef< CSequenceSearchTool >	CSequenceSearchForm::m_Tool
wxChoice *	CSequenceSearchForm::m_DbCombo
wxChoice *	CSequenceSearchForm::m_TypeCombo
wxChoice *	CSequenceSearchForm::m_PatternCombo
vector< ISeqLocSearchContext * >	CSequenceSearchForm::m_SeqLocContexts
TPatternType	CSequenceSearchForm::m_PatternType
string	CSequenceSearchForm::m_SearchPattern
wxFlexGridSizer *	CSequenceSearchForm::m_pSearchSizer
wxFlexGridSizer *	CSequenceSearchForm::m_pPatternSizer
CRef< CSequenceSearchQuery >	CSequenceSearchJob::m_Query
TPatternType	CSequenceSearchJob::m_PatternType
string	CSequenceSearchJob::m_SearchStr
CRegexp *	CSequenceSearchJob::m_Pattern
	search patteern for "Exact Match" and "Wildcard" modes More...
string	CSequenceSearchJob::m_PatternFile
	regular expression to apply More...
CTextPanel *	CTextView::m_Window
bool	CTextView::m_UsingStatusBar
CVCFLoaderManager &	CVCFLoaderManager::CPage::m_Manager
CUIObject	CVCFLoaderManager::m_Descr
IServiceLocator *	CVCFLoaderManager::m_SrvLocator
wxWindow *	CVCFLoaderManager::m_ParentWindow
EState	CVCFLoaderManager::m_State
string	CVCFLoaderManager::m_RegPath
CBedParamsPanel *	CVCFLoaderManager::m_ParamsPanel
CBedLoadParams	CVCFLoaderManager::m_Params
vector< wxString >	CVCFLoaderManager::m_FileNames
CPage	CVCFLoaderManager::m_OptionsPage
vector< ISeqLocSearchContext * >	CVcfSearchQuery::m_VcfContexts
string	CVcfSearchQuery::m_Ids
CRef< CVcfSearchTool >	CVcfSearchForm::m_Tool
wxChoice *	CVcfSearchForm::m_DbCombo
CRef< CVcfSearchQuery >	CVcfSearchJob::m_Query
CWigLoadManager &	CWigLoadManager::CPage::m_Manager
CUIObject	CWigLoadManager::m_Descr
IServiceLocator *	CWigLoadManager::m_SrvLocator
wxWindow *	CWigLoadManager::m_ParentWindow
EState	CWigLoadManager::m_State
string	CWigLoadManager::m_RegPath
CWigParamsPanel *	CWigLoadManager::m_ParamsPanel
CWigLoadParams	CWigLoadManager::m_Params
vector< wxString >	CWigLoadManager::m_FileNames
CPage	CWigLoadManager::m_OptionsPage
wxGrid *	CResolveIdDlg::m_Grid

Friends
class	CCleanupParams::CCleanupPanel
class	CSeqTextView::CSeqTextViewFactory
class	CFeatTableView::CFeatTableViewFactory
class	CViewGraphic::CViewGraphicFactory
class	CSequinDesktopView::CSequinDesktopViewFactory
class	CSrcEditParams::CSrcEditPanel
class	CFastaLoadParams::CFASTAFormatParamsPanel
class	CGffLoadParams::CGffParamsPanel
class	CTextView::CTextViewFactory

CSearchJobBase overridables
virtual bool	CFeatureSearchJob::x_ValidateParams ()
	returns true if Job params are correct, implement in derived classes More...
virtual EJobState	CFeatureSearchJob::x_DoSearch ()
	performs searching, assuming that params are correct; Implement in derived classes More...
virtual void	CFeatureSearchJob::x_SetupColumns (CObjectList &obj_list)
	add custom columns if needed More...

CAlgoToolManagerParamsPanel implementation
void	CCleanupPanel::RestoreDefaults ()
	override in derived classes More...

IRegSettings interface implementation
virtual void	CCleanupPanel::LoadSettings ()
virtual void	CCleanupPanel::SaveSettings () const
	override in derived classes More...

overriding IUIToolManager functions implemented in CAlgoToolManagerBase
virtual void	CCleanupTool::InitUI ()
	override this function in a derived class and initialize extra members More...
virtual void	CCleanupTool::CleanUI ()
	override this function in a derived class and clean extra members More...
virtual bool	CCleanupTool::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CCleanupTool::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CCleanupTool::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...

IExtension interface implementation
virtual string	CCleanupTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CCleanupTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

overriding CAlgoToolManagerBase virtual functions
virtual CAlgoToolManagerParamsPanel *	CCleanupTool::x_GetParamsPanel ()
	returns a pointer to the parameters panel, override in derived classes More...
virtual IRegSettings *	CCleanupTool::x_GetParamsAsRegSetting ()
	return a pointer to Parameters object as IRegSettings interface More...
virtual bool	CCleanupTool::x_CreateParamsPanelIfNeeded ()
	returns / creates Parameters panel, override in derived classes see cpp file for example More...
virtual bool	CCleanupTool::x_ValidateParams ()
	validates user input in Parameters panel, report errors if any More...
virtual CDataLoadingAppJob *	CCleanupTool::x_CreateLoadingJob ()
	factory method for creating the job that executes the tool algorithm override in derived classes More...

IFileLoadPanelClient interface implementation
virtual string	CGBFlatFileLoadManager::GetLabel () const
virtual wxString	CGBFlatFileLoadManager::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CGBFlatFileLoadManager::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CGBFlatFileLoadManager::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CGBFlatFileLoadManager::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CGBFlatFileLoadManager::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CGBFlatFileLoadManager::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CGBFlatFileLoadManager::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CGBFlatFileLoadManager::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CGBFlatFileLoadManager::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CGBFlatFileLoadManager::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CGBFlatFileLoadManager::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CGBFlatFileLoadManager::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CGBFlatFileLoadManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CGBFlatFileLoadManager::GetExecuteUnit ()
virtual IWizardPage *	CGBFlatFileLoadManager::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual IWizardPage *	CGBFlatFileLoadManager::GetOptionsPage ()
	Returns page for tool options (long wizard path via "Options" button) More...
virtual void	CGBFlatFileLoadManager::SetPrevPage (IWizardPage *prevPage)
	Sets a wizard page which should show before the first page of the tool. More...
virtual wxString	CGBFlatFileLoadManager::GetFormatWildcard ()
virtual bool	CGBFlatFileLoadManager::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CGBFlatFileLoadManager::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CGBFlatFileLoadManager::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CGBFlatFileLoadManager::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CGBFlatFileLoadManager::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CGBFlatFileLoadManager::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CGBFlatFileLoadManager::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CGBFlatFileLoadManager::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	CGBFlatFileLoadManager::SetRegistryPath (const string &path)
virtual void	CGBFlatFileLoadManager::LoadSettings ()
virtual void	CGBFlatFileLoadManager::SaveSettings () const

IExtension interface implementation
virtual string	CGenBankUIDataSource::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CGenBankUIDataSource::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IServiceLocatorConsumer implementation
virtual void	CGenBankUIDataSource::SetServiceLocator (IServiceLocator *locator)

IUIDataSource interface implementation
virtual IUIDataSourceType &	CGenBankUIDataSource::GetType () const
virtual const IUIObject &	CGenBankUIDataSource::GetDescr ()
	returns UI description of the object (label, icon etc.) More...
virtual bool	CGenBankUIDataSource::IsOpen ()
	a Data source needs to be open before use and closed after. More...
virtual bool	CGenBankUIDataSource::Open ()
	Prepares Data Source for use, any initialization that can be potentially time-consuming or may require error handling shall be done in this function, not in a constructor. More...
virtual bool	CGenBankUIDataSource::Close ()
virtual void	CGenBankUIDataSource::EditProperties ()
virtual IUIToolManager *	CGenBankUIDataSource::GetLoadManager ()
virtual int	CGenBankUIDataSource::GetDefaultCommand ()
virtual wxEvtHandler *	CGenBankUIDataSource::CreateEvtHandler ()

IExplorerItemCmdContributor implementation
virtual IExplorerItemCmdContributor::TContribution	CGenBankUIDataSource::GetMenu (wxTreeCtrl &treeCtrl, PT::TItems &items)
	for the given set of items returns a contribution More...

IUIDataSourceType interface implementation
virtual const IUIObject &	CGenBankUIDataSourceType::GetDescr ()
	returns UI description of the type (label, icon etc.) More...
virtual IUIDataSource *	CGenBankUIDataSourceType::CreateDataSource ()
	factory method; create an Data Source instance More...
virtual bool	CGenBankUIDataSourceType::AutoCreateDefaultDataSource ()
	returns "true" if this type needs to create a default instance of the Data Source at start-up More...

IExtension interface implementation
virtual string	CGenBankUIDataSourceType::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CGenBankUIDataSourceType::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IUIToolManager interface implementation
virtual void	CGenBankUILoadManager::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CGenBankUILoadManager::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CGenBankUILoadManager::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CGenBankUILoadManager::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CGenBankUILoadManager::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CGenBankUILoadManager::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CGenBankUILoadManager::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CGenBankUILoadManager::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CGenBankUILoadManager::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CGenBankUILoadManager::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CGenBankUILoadManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...

IRegSettings interface implementation
virtual void	CGenBankUILoadManager::SetRegistryPath (const string &path)
virtual void	CGenBankUILoadManager::LoadSettings ()
virtual void	CGenBankUILoadManager::SaveSettings () const

overriding IUIToolManager functions implemented in CAlgoToolManagerBase
virtual void	CMergeTool::InitUI ()
	override this function in a derived class and initialize extra members More...
virtual void	CMergeTool::CleanUI ()
	override this function in a derived class and clean extra members More...
virtual bool	CMergeTool::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CMergeTool::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CMergeTool::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...

IExtension interface implementation
virtual string	CMergeTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CMergeTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

overriding CAlgoToolManagerBase virtual functions
virtual CAlgoToolManagerParamsPanel *	CMergeTool::x_GetParamsPanel ()
	returns a pointer to the parameters panel, override in derived classes More...
virtual IRegSettings *	CMergeTool::x_GetParamsAsRegSetting ()
	return a pointer to Parameters object as IRegSettings interface More...
virtual bool	CMergeTool::x_CreateParamsPanelIfNeeded ()
	returns / creates Parameters panel, override in derived classes see cpp file for example More...
virtual bool	CMergeTool::x_ValidateParams ()
	validates user input in Parameters panel, report errors if any More...
virtual CDataLoadingAppJob *	CMergeTool::x_CreateLoadingJob ()
	factory method for creating the job that executes the tool algorithm override in derived classes More...

IWMClient interface implementation
virtual wxWindow *	CSeqTextView::GetWindow ()
	returns a pointer to the wxWindow representing the client More...
virtual wxEvtHandler *	CSeqTextView::GetCommandHandler ()
	IWMClient implementation. More...

IView implementation
@(
virtual const CViewTypeDescriptor &	CSeqTextView::GetTypeDescriptor () const
	return an object providing meta information about thei view type More...
virtual void	CSeqTextView::CreateViewWindow (wxWindow *parent)
	create Window corresponding to the view More...
virtual void	CSeqTextView::DestroyViewWindow ()
	destroy Window corresponding to the view More...

IProjectView implementation
virtual bool	CSeqTextView::InitView (TConstScopedObjects &objects, const objects::CUser_object *params)
	initialize view with data, inside this function the view must call CProjectService::AttachView to connect to a project More...

ISelectionClient Implementation
virtual void	CSeqTextView::GetSelection (CSelectionEvent &evt) const
	get selection for broadcasting More...
virtual void	CSeqTextView::GetSelection (TConstScopedObjects &objs) const
	shall return data objects representing selected things, return one data object for every selected thing. More...
virtual void	CSeqTextView::GetMainObject (TConstScopedObjects &objs) const
	Adds the main data objects represented by the client to "objects". More...

IExtension interface implementation
virtual string	CSeqTextViewFactory::GetExtensionIdentifier () const
	CSeqTextViewFactory. More...
virtual string	CSeqTextViewFactory::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IProjectViewFactory interface implementation
virtual IView *	CSeqTextViewFactory::CreateInstance () const
	creates a view instance More...
virtual IView *	CSeqTextViewFactory::CreateInstanceByFingerprint (const TFingerprint &fingerprint) const
	if fingerprint is recognized - creates and returns a new instance More...
virtual void	CSeqTextViewFactory::RegisterIconAliases (wxFileArtProvider &provider)
	called by the framework to give Factory a chance to register images used by view More...
virtual const CProjectViewTypeDescriptor &	CSeqTextViewFactory::GetProjectViewTypeDescriptor () const
	returns a Descriptor for the View Type supported by the Factory More...
virtual int	CSeqTextViewFactory::TestInputObjects (TConstScopedObjects &objects)
	tests input objects (not using object conversion) and returns a combination of ETestResult flags better name is IsCompatibleWith() More...
virtual bool	CSeqTextViewFactory::IsCompatibleWith (const CObject &object, objects::CScope &scope)

IUITool implementation
virtual IUITool *	CSNPSearchTool::Clone () const
virtual string	CSNPSearchTool::GetName () const
	returns unique name of the method that is used in UI to identify it More...
virtual string	CSNPSearchTool::GetDescription () const
	returns a detailed description of the method that is used in UI More...

IDMSearchTool implementation
virtual CIRef< IDMSearchForm >	CSNPSearchTool::CreateSearchForm ()
	factory method for creating a form representing the tool More...
virtual bool	CSNPSearchTool::IsCompatible (IDataMiningContext *context)
	retuns true if the tool is compatible with the provided Search Context More...

IExtension implementation
virtual string	CSNPSearchTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CSNPSearchTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IDMSearchForm implementation
typedef pair< string, string >	CSNPSearchForm::TStrPair
typedef vector< TStrPair >	CSNPSearchForm::TNamePairs
CRef< CSNPSearchTool >	CSNPSearchForm::m_Tool
virtual void	CSNPSearchForm::Create ()
virtual void	CSNPSearchForm::Init ()
virtual void	CSNPSearchForm::Update ()
virtual CIRef< IDMSearchQuery >	CSNPSearchForm::ConstructQuery ()
virtual wxSizer *	CSNPSearchForm::GetWidget (wxWindow *parent)
	return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget) More...
virtual void	CSNPSearchForm::UpdateContexts ()
	updates m_ContextCombo More...
virtual void	CSNPSearchForm::x_LoadSettings (const CRegistryReadView &view)
virtual void	CSNPSearchForm::x_SaveSettings (CRegistryWriteView view) const
IDMSearchTool *	CSNPSearchForm::x_GetTool (void)

CSearchJobBase overridables
virtual bool	CSNPSearchJob::x_ValidateParams ()
	returns true if Job params are correct, implement in derived classes More...
virtual EJobState	CSNPSearchJob::x_DoSearch ()
	performs searching, assuming that params are correct; Implement in derived classes More...
virtual void	CSNPSearchJob::x_SetupColumns (CObjectList &obj_list)
	add custom columns if needed More...
virtual CObjectListTableModel *	CSNPSearchJob::x_GetNewOLTModel () const
	factory method creating new column handler for CObjectListWidget More...

IWMClient interface implementation
virtual wxWindow *	CFeatTableView::GetWindow ()
	returns a pointer to the wxWindow representing the client More...

IView interface implementation
virtual const CViewTypeDescriptor &	CFeatTableView::GetTypeDescriptor () const
	return an object providing meta information about thei view type More...
virtual void	CFeatTableView::CreateViewWindow (wxWindow *parent)
	create Window corresponding to the view More...
virtual void	CFeatTableView::DestroyViewWindow ()
	destroy Window corresponding to the view More...

IProjectView implementation
virtual bool	CFeatTableView::InitView (TConstScopedObjects &objects, const objects::CUser_object *params)
	initialize view with data, inside this function the view must call CProjectService::AttachView to connect to a project More...
virtual void	CFeatTableView::OnProjectChanged (CProjectViewEvent &evt)
virtual void	CFeatTableView::OnProjectChanged ()

ISelectionClient Implementation
virtual void	CFeatTableView::GetSelection (CSelectionEvent &evt) const
	get selection for broadcasting More...
virtual void	CFeatTableView::GetSelection (TConstScopedObjects &objs) const
	shall return data objects representing selected things, return one data object for every selected thing. More...

CProjectViewBase overridables
virtual void	CFeatTableView::GetCompatibleToolBars (vector< string > &names)
	returns the names of toolbars compatible with this class (toolbars that are relevant and useful in the context of this class) More...
virtual void	CFeatTableView::GetVisibleRanges (CVisibleRange &vrange) const
	populate a visible range event for broadcasting More...

CProjectView callback overridables
virtual void	CFeatTableView::OnWidgetRangeChanged ()
virtual void	CFeatTableView::OnWidgetSelChanged ()

IRegSettings interface implementation
virtual void	CFeatTableView::SetRegistryPath (const string &reg_path)
virtual void	CFeatTableView::LoadSettings ()
virtual void	CFeatTableView::SaveSettings () const

CProjectView overridables
objects::CScope *	CFeatTableView::x_PreAttachToProject (TConstScopedObjects &objects)
void	CFeatTableView::x_PostAttachToProject ()

IExtension interface implementation
virtual string	CFeatTableViewFactory::GetExtensionIdentifier () const
	CFeatTableViewFactory. More...
virtual string	CFeatTableViewFactory::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IProjectViewFactory interface implementation
virtual IView *	CFeatTableViewFactory::CreateInstance () const
	creates a view instance More...
virtual IView *	CFeatTableViewFactory::CreateInstanceByFingerprint (const TFingerprint &fingerprint) const
	if fingerprint is recognized - creates and returns a new instance More...
virtual void	CFeatTableViewFactory::RegisterIconAliases (wxFileArtProvider &provider)
	called by the framework to give Factory a chance to register images used by view More...
virtual const CProjectViewTypeDescriptor &	CFeatTableViewFactory::GetProjectViewTypeDescriptor () const
	returns a Descriptor for the View Type supported by the Factory More...
virtual bool	CFeatTableViewFactory::IsCompatibleWith (const CObject &object, objects::CScope &scope)
virtual int	CFeatTableViewFactory::TestInputObjects (TConstScopedObjects &objects)
	tests input objects (not using object conversion) and returns a combination of ETestResult flags better name is IsCompatibleWith() More...

IWMClient interface implementation
virtual wxWindow *	CViewGraphic::GetWindow ()
	returns a pointer to the wxWindow representing the client More...
virtual const wxMenu *	CViewGraphic::GetMenu ()
	returns a menu (must be deleted by the caller) menu injections should follow a separator named "Contribs" More...

IView interface implementation
virtual const CViewTypeDescriptor &	CViewGraphic::GetTypeDescriptor () const
	return an object providing meta information about thei view type More...
virtual void	CViewGraphic::CreateViewWindow (wxWindow *parent)
	create Window corresponding to the view More...
virtual void	CViewGraphic::DestroyViewWindow ()
	destroy Window corresponding to the view More...

IProjectView implementation
virtual bool	CViewGraphic::InitView (TConstScopedObjects &objects, const objects::CUser_object *params)
	initialize view with data, inside this function the view must call CProjectService::AttachView to connect to a project More...
virtual void	CViewGraphic::OnProjectChanged (CProjectViewEvent &evt)
virtual void	CViewGraphic::SetOrigObject (SConstScopedObject &obj)

IViewSettingsAtProject implementation
void	CViewGraphic::SaveSettingsAtProject (objects::CGBProjectHandle &project) const

ISelectionClient Implementation
void	CViewGraphic::GetSelection (CSelectionEvent &evt) const
	get selection for broadcasting More...
void	CViewGraphic::GetSelection (TConstScopedObjects &objs) const
	shall return data objects representing selected things, return one data object for every selected thing. More...

IVisibleRangeClient interface implementation
virtual void	CViewGraphic::OnVisibleRangeChanged (const CVisibleRange &vrange, IVisibleRangeClient *source)

IDataMiningContext Implementation
virtual string	CViewGraphic::GetDMContextName ()
	returns Name of the context to be used in UI More...

CProjectView overridables
virtual void	CViewGraphic::GetVisibleRanges (CVisibleRange &vrange) const
	populate a visible range event for broadcasting More...
virtual void	CViewGraphic::OnWidgetRangeChanged ()

CProjectViewBase overridables
virtual void	CViewGraphic::OnViewAttached (IView &)
virtual void	CViewGraphic::OnViewReleased (IView &)

IExtension interface implementation
virtual string	CViewGraphicFactory::GetExtensionIdentifier () const
	CViewGraphicFactory. More...
virtual string	CViewGraphicFactory::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IProjectViewFactory interface implementation
virtual IView *	CViewGraphicFactory::CreateInstance () const
	creates a view instance More...
virtual IView *	CViewGraphicFactory::CreateInstanceByFingerprint (const TFingerprint &fingerprint) const
	if fingerprint is recognized - creates and returns a new instance More...
virtual void	CViewGraphicFactory::RegisterIconAliases (wxFileArtProvider &provider)
	called by the framework to give Factory a chance to register images used by view More...
virtual void	CViewGraphicFactory::RegisterCommands (CUICommandRegistry &cmd_reg, wxFileArtProvider &provider)
	called by the framework to give Factory a chance to register commands used by view More...
virtual const CProjectViewTypeDescriptor &	CViewGraphicFactory::GetProjectViewTypeDescriptor () const
	returns a Descriptor for the View Type supported by the Factory More...
virtual int	CViewGraphicFactory::TestInputObjects (TConstScopedObjects &objects)
	tests input objects (not using object conversion) and returns a combination of ETestResult flags better name is IsCompatibleWith() More...
virtual bool	CViewGraphicFactory::IsCompatibleWith (const CObject &object, objects::CScope &scope)

overriding IUIToolManager functions implemented in CAlgoToolManagerBase
virtual void	CAutodefToolManager::InitUI ()
	override this function in a derived class and initialize extra members More...
virtual void	CAutodefToolManager::CleanUI ()
	override this function in a derived class and clean extra members More...
virtual IAppTask *	CAutodefToolManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...

IExtension interface implementation
virtual string	CAutodefToolManager::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CAutodefToolManager::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

overriding CAlgoToolManagerBase virtual functions
virtual CAlgoToolManagerParamsPanel *	CAutodefToolManager::x_GetParamsPanel ()
	returns a pointer to the parameters panel, override in derived classes More...
virtual IRegSettings *	CAutodefToolManager::x_GetParamsAsRegSetting ()
	return a pointer to Parameters object as IRegSettings interface More...
virtual bool	CAutodefToolManager::x_CreateParamsPanelIfNeeded ()
	returns / creates Parameters panel, override in derived classes see cpp file for example More...
virtual bool	CAutodefToolManager::x_ValidateParams ()
	validates user input in Parameters panel, report errors if any More...
virtual void	CAutodefToolManager::x_CreateProjectPanelIfNeeded ()
	returns / creates Project panel More...
virtual CDataLoadingAppJob *	CAutodefToolManager::x_CreateLoadingJob ()
	factory method for creating the job that executes the tool algorithm override in derived classes More...

IGuiWidgetHost implementation
virtual void	CSequinDesktopView::CloseWidget ()
	IGuiWidgetHost implementation. More...
virtual void	CSequinDesktopView::WidgetSelectionChanged ()
virtual void	CSequinDesktopView::WidgetActivated ()
virtual void	CSequinDesktopView::GetAppSelection (TConstObjects &objects)
virtual void	CSequinDesktopView::OnWidgetCommand (const string &command)
virtual void	CSequinDesktopView::ShowView (const string &viewName, FWindowFactory widgetFactory, TConstScopedObjects &objects, bool bFloat)

IWMClient interface implementation
virtual wxWindow *	CSequinDesktopView::GetWindow ()
	returns a pointer to the wxWindow representing the client More...
virtual wxEvtHandler *	CSequinDesktopView::GetCommandHandler ()
	IWMClient implementation. More...

IMenuContributor interface implementation
virtual const wxMenu *	CSequinDesktopView::GetMenu ()
	returns a menu (must be deleted by the caller) menu injections should follow a separator named "Contribs" More...

IView implementation
@(
virtual const CViewTypeDescriptor &	CSequinDesktopView::GetTypeDescriptor () const
	return an object providing meta information about thei view type More...
virtual void	CSequinDesktopView::CreateViewWindow (wxWindow *parent)
	create Window corresponding to the view More...
virtual void	CSequinDesktopView::DestroyViewWindow ()
	destroy Window corresponding to the view More...

IProjectView implementation
virtual bool	CSequinDesktopView::InitView (TConstScopedObjects &objects, const objects::CUser_object *params)
	initialize view with data, inside this function the view must call CProjectService::AttachView to connect to a project More...
virtual void	CSequinDesktopView::OnProjectChanged (CProjectViewEvent &evt)

ISelectionClient Implementation
virtual void	CSequinDesktopView::GetSelection (CSelectionEvent &evt) const
	get selection for broadcasting More...
virtual void	CSequinDesktopView::GetSelection (TConstScopedObjects &objs) const
	shall return data objects representing selected things, return one data object for every selected thing. More...
virtual void	CSequinDesktopView::GetMainObject (TConstScopedObjects &objs) const
	Adds the main data objects represented by the client to "objects". More...

IExtension interface implementation
virtual string	CSequinDesktopViewFactory::GetExtensionIdentifier () const
	CSequinDesktopViewFactory. More...
virtual string	CSequinDesktopViewFactory::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IProjectViewFactory interface implementation
virtual IView *	CSequinDesktopViewFactory::CreateInstance () const
	creates a view instance More...
virtual IView *	CSequinDesktopViewFactory::CreateInstanceByFingerprint (const TFingerprint &fingerprint) const
	if fingerprint is recognized - creates and returns a new instance More...
virtual void	CSequinDesktopViewFactory::RegisterIconAliases (wxFileArtProvider &provider)
	called by the framework to give Factory a chance to register images used by view More...
virtual void	CSequinDesktopViewFactory::RegisterCommands (CUICommandRegistry &cmd_reg, wxFileArtProvider &provider)
	called by the framework to give Factory a chance to register commands used by view More...
virtual const CProjectViewTypeDescriptor &	CSequinDesktopViewFactory::GetProjectViewTypeDescriptor () const
	returns a Descriptor for the View Type supported by the Factory More...
virtual int	CSequinDesktopViewFactory::TestInputObjects (TConstScopedObjects &objects)
	tests input objects (not using object conversion) and returns a combination of ETestResult flags better name is IsCompatibleWith() More...

COpenViewManager implementation
virtual string	CSequinDesktopViewFactory::GetTargetType () const
virtual bool	CSequinDesktopViewFactory::AllowMerge () const

overriding IUIToolManager functions implemented in CAlgoToolManagerBase
virtual void	CSrcEditTool::InitUI ()
	override this function in a derived class and initialize extra members More...
virtual void	CSrcEditTool::CleanUI ()
	override this function in a derived class and clean extra members More...
virtual bool	CSrcEditTool::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CSrcEditTool::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CSrcEditTool::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...

IExtension interface implementation
virtual string	CSrcEditTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CSrcEditTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

overriding CAlgoToolManagerBase virtual functions
virtual CAlgoToolManagerParamsPanel *	CSrcEditTool::x_GetParamsPanel ()
	returns a pointer to the parameters panel, override in derived classes More...
virtual IRegSettings *	CSrcEditTool::x_GetParamsAsRegSetting ()
	return a pointer to Parameters object as IRegSettings interface More...
virtual bool	CSrcEditTool::x_CreateParamsPanelIfNeeded ()
	returns / creates Parameters panel, override in derived classes see cpp file for example More...
virtual bool	CSrcEditTool::x_ValidateParams ()
	validates user input in Parameters panel, report errors if any More...
virtual CDataLoadingAppJob *	CSrcEditTool::x_CreateLoadingJob ()
	factory method for creating the job that executes the tool algorithm override in derived classes More...

IObjectLoader implementation
virtual TObjects &	C5ColObjectLoader::GetObjects ()
virtual string	C5ColObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	C5ColObjectLoader::PreExecute ()
virtual bool	C5ColObjectLoader::Execute (ICanceled &canceled)
virtual bool	C5ColObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CAgpObjectLoader::GetObjects ()
virtual string	CAgpObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CAgpObjectLoader::PreExecute ()
virtual bool	CAgpObjectLoader::Execute (ICanceled &canceled)
virtual bool	CAgpObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CAssemblyObjectLoader::GetObjects ()
virtual string	CAssemblyObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CAssemblyObjectLoader::PreExecute ()
virtual bool	CAssemblyObjectLoader::Execute (ICanceled &canceled)
virtual bool	CAssemblyObjectLoader::PostExecute ()

IGencollSvcErrors implementation
virtual void	CAssemblyObjectLoader::ReportError (const string &accession, const string &error)

IObjectLoader implementation
virtual TObjects &	CBedObjectLoader::GetObjects ()
virtual string	CBedObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CBedObjectLoader::PreExecute ()
virtual bool	CBedObjectLoader::Execute (ICanceled &canceled)
virtual bool	CBedObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CChainLoader::GetObjects ()
virtual string	CChainLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CChainLoader::PreExecute ()
virtual bool	CChainLoader::Execute (ICanceled &canceled)
virtual bool	CChainLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CGBFlatFileObjectLoader::GetObjects ()
virtual string	CGBFlatFileObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CGBFlatFileObjectLoader::PreExecute ()
virtual bool	CGBFlatFileObjectLoader::Execute (ICanceled &canceled)
virtual bool	CGBFlatFileObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CGBObjectLoader::GetObjects ()
virtual string	CGBObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CGBObjectLoader::PreExecute ()
virtual bool	CGBObjectLoader::Execute (ICanceled &canceled)
virtual bool	CGBObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CGffObjectLoader::GetObjects ()
virtual string	CGffObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CGffObjectLoader::PreExecute ()
virtual bool	CGffObjectLoader::Execute (ICanceled &canceled)
virtual bool	CGffObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CPhyObjectLoader::GetObjects ()
virtual string	CPhyObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CPhyObjectLoader::PreExecute ()
virtual bool	CPhyObjectLoader::Execute (ICanceled &canceled)
virtual bool	CPhyObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CPslObjectLoader::GetObjects ()
virtual string	CPslObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CPslObjectLoader::PreExecute ()
virtual bool	CPslObjectLoader::Execute (ICanceled &canceled)
virtual bool	CPslObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CVcfObjectLoader::GetObjects ()
virtual string	CVcfObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CVcfObjectLoader::PreExecute ()
virtual bool	CVcfObjectLoader::Execute (ICanceled &canceled)
virtual bool	CVcfObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CWigObjectLoader::GetObjects ()
virtual string	CWigObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CWigObjectLoader::PreExecute ()
virtual bool	CWigObjectLoader::Execute (ICanceled &canceled)
virtual bool	CWigObjectLoader::PostExecute ()

IFileLoadPanelClient interface implementation
virtual string	CPhyLoader::GetLabel () const
virtual wxString	CPhyLoader::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CPhyLoader::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CPhyLoader::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CPhyLoader::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CPhyLoader::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CPhyLoader::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CPhyLoader::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CPhyLoader::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CPhyLoader::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CPhyLoader::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CPhyLoader::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CPhyLoader::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CPhyLoader::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CPhyLoader::GetExecuteUnit ()
virtual IWizardPage *	CPhyLoader::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual wxString	CPhyLoader::GetFormatWildcard ()
virtual bool	CPhyLoader::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CPhyLoader::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CPhyLoader::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CPhyLoader::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CPhyLoader::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CPhyLoader::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CPhyLoader::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CPhyLoader::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	CPhyLoader::SetRegistryPath (const string &path)
virtual void	CPhyLoader::LoadSettings ()
virtual void	CPhyLoader::SaveSettings () const

IFileLoadPanelClient interface implementation
virtual string	CRMLoader::GetLabel () const
virtual wxString	CRMLoader::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CRMLoader::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CRMLoader::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CRMLoader::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CRMLoader::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CRMLoader::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CRMLoader::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CRMLoader::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CRMLoader::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CRMLoader::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CRMLoader::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CRMLoader::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CRMLoader::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CRMLoader::GetExecuteUnit ()
virtual IWizardPage *	CRMLoader::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual wxString	CRMLoader::GetFormatWildcard ()
virtual bool	CRMLoader::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CRMLoader::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CRMLoader::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CRMLoader::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CRMLoader::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CRMLoader::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CRMLoader::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CRMLoader::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IFileLoadPanelClient interface implementation
virtual string	C5ColLoadManager::GetLabel () const
virtual wxString	C5ColLoadManager::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	C5ColLoadManager::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	C5ColLoadManager::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	C5ColLoadManager::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	C5ColLoadManager::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	C5ColLoadManager::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	C5ColLoadManager::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	C5ColLoadManager::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	C5ColLoadManager::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	C5ColLoadManager::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	C5ColLoadManager::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	C5ColLoadManager::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	C5ColLoadManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	C5ColLoadManager::GetExecuteUnit ()
virtual IWizardPage *	C5ColLoadManager::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual wxString	C5ColLoadManager::GetFormatWildcard ()
virtual bool	C5ColLoadManager::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	C5ColLoadManager::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	C5ColLoadManager::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	C5ColLoadManager::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	C5ColLoadManager::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	C5ColLoadManager::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	C5ColLoadManager::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	C5ColLoadManager::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	C5ColLoadManager::SetRegistryPath (const string &path)
virtual void	C5ColLoadManager::LoadSettings ()
virtual void	C5ColLoadManager::SaveSettings () const

IFileLoadPanelClient interface implementation
virtual string	CAgpLoader::GetLabel () const
virtual wxString	CAgpLoader::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CAgpLoader::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CAgpLoader::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CAgpLoader::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CAgpLoader::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CAgpLoader::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CAgpLoader::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CAgpLoader::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CAgpLoader::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CAgpLoader::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CAgpLoader::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CAgpLoader::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CAgpLoader::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CAgpLoader::GetExecuteUnit ()
virtual IWizardPage *	CAgpLoader::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual IWizardPage *	CAgpLoader::GetOptionsPage ()
	Returns page for tool options (long wizard path via "Options" button) More...
virtual void	CAgpLoader::SetPrevPage (IWizardPage *prevPage)
	Sets a wizard page which should show before the first page of the tool. More...
virtual wxString	CAgpLoader::GetFormatWildcard ()
virtual bool	CAgpLoader::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CAgpLoader::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CAgpLoader::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CAgpLoader::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CAgpLoader::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CAgpLoader::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CAgpLoader::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CAgpLoader::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	CAgpLoader::SetRegistryPath (const string &path)
virtual void	CAgpLoader::LoadSettings ()
virtual void	CAgpLoader::SaveSettings () const

IFileLoadPanelClient interface implementation
virtual string	CBedLoadManager::GetLabel () const
virtual wxString	CBedLoadManager::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CBedLoadManager::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CBedLoadManager::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CBedLoadManager::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CBedLoadManager::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CBedLoadManager::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CBedLoadManager::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CBedLoadManager::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CBedLoadManager::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CBedLoadManager::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CBedLoadManager::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CBedLoadManager::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CBedLoadManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CBedLoadManager::GetExecuteUnit ()
virtual IWizardPage *	CBedLoadManager::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual IWizardPage *	CBedLoadManager::GetOptionsPage ()
	Returns page for tool options (long wizard path via "Options" button) More...
virtual void	CBedLoadManager::SetPrevPage (IWizardPage *prevPage)
	Sets a wizard page which should show before the first page of the tool. More...
virtual wxString	CBedLoadManager::GetFormatWildcard ()
virtual bool	CBedLoadManager::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CBedLoadManager::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CBedLoadManager::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CBedLoadManager::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CBedLoadManager::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CBedLoadManager::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CBedLoadManager::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CBedLoadManager::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	CBedLoadManager::SetRegistryPath (const string &path)
virtual void	CBedLoadManager::LoadSettings ()
virtual void	CBedLoadManager::SaveSettings () const

IFileLoadPanelClient interface implementation
virtual string	CColumnarVCFLoaderManager::GetLabel () const
virtual wxString	CColumnarVCFLoaderManager::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CColumnarVCFLoaderManager::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CColumnarVCFLoaderManager::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CColumnarVCFLoaderManager::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CColumnarVCFLoaderManager::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CColumnarVCFLoaderManager::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CColumnarVCFLoaderManager::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CColumnarVCFLoaderManager::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CColumnarVCFLoaderManager::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CColumnarVCFLoaderManager::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CColumnarVCFLoaderManager::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CColumnarVCFLoaderManager::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CColumnarVCFLoaderManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CColumnarVCFLoaderManager::GetExecuteUnit ()
virtual IWizardPage *	CColumnarVCFLoaderManager::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual IWizardPage *	CColumnarVCFLoaderManager::GetOptionsPage ()
	Returns page for tool options (long wizard path via "Options" button) More...
virtual void	CColumnarVCFLoaderManager::SetPrevPage (IWizardPage *prevPage)
	Sets a wizard page which should show before the first page of the tool. More...
virtual wxString	CColumnarVCFLoaderManager::GetFormatWildcard ()
virtual bool	CColumnarVCFLoaderManager::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CColumnarVCFLoaderManager::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CColumnarVCFLoaderManager::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CColumnarVCFLoaderManager::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CColumnarVCFLoaderManager::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CColumnarVCFLoaderManager::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CColumnarVCFLoaderManager::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CColumnarVCFLoaderManager::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	CColumnarVCFLoaderManager::SetRegistryPath (const string &path)
virtual void	CColumnarVCFLoaderManager::LoadSettings ()
virtual void	CColumnarVCFLoaderManager::SaveSettings () const

IUITool implementation
virtual IUITool *	CComponentSearchTool::Clone () const
virtual string	CComponentSearchTool::GetName () const
	returns unique name of the method that is used in UI to identify it More...
virtual string	CComponentSearchTool::GetDescription () const
	returns a detailed description of the method that is used in UI More...

IDMSearchTool implementation
virtual CIRef< IDMSearchForm >	CComponentSearchTool::CreateSearchForm ()
	factory method for creating a form representing the tool More...
virtual bool	CComponentSearchTool::IsCompatible (IDataMiningContext *context)
	retuns true if the tool is compatible with the provided Search Context More...

IExtension implementation
virtual string	CComponentSearchTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CComponentSearchTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IDMSearchForm implementation
virtual void	CComponentSearchForm::Create ()
virtual void	CComponentSearchForm::Init ()
virtual void	CComponentSearchForm::Update ()

CSearchFormBase overridables
virtual void	CComponentSearchForm::x_CreateWidgets ()
virtual IDMSearchTool *	CComponentSearchForm::x_GetTool ()

CSearchJobBase overridables
virtual bool	CComponentSearchJob::x_ValidateParams ()
	returns true if Job params are correct, implement in derived classes More...
virtual EJobState	CComponentSearchJob::x_DoSearch ()
	performs searching, assuming that params are correct; Implement in derived classes More...
virtual void	CComponentSearchJob::x_SetupColumns (CObjectList &obj_list)
	add custom columns if needed More...

IUITool implementation
virtual IUITool *	CCpgSearchTool::Clone () const
virtual string	CCpgSearchTool::GetName () const
	returns unique name of the method that is used in UI to identify it More...
virtual string	CCpgSearchTool::GetDescription () const
	returns a detailed description of the method that is used in UI More...

IDMSearchTool implementation
virtual CIRef< IDMSearchForm >	CCpgSearchTool::CreateSearchForm ()
	factory method for creating a form representing the tool More...
virtual bool	CCpgSearchTool::IsCompatible (IDataMiningContext *context)
	retuns true if the tool is compatible with the provided Search Context More...

IExtension implementation
virtual string	CCpgSearchTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CCpgSearchTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IDMSearchForm implementation
virtual void	CCpgSearchForm::Create ()
virtual void	CCpgSearchForm::Init ()
virtual void	CCpgSearchForm::Update ()

CSearchJobBase overridables
virtual bool	CCpgSearchJob::x_ValidateParams ()
	returns true if Job params are correct, implement in derived classes More...
virtual IAppJob::EJobState	CCpgSearchJob::x_DoSearch ()
	performs searching, assuming that params are correct; Implement in derived classes More...
virtual void	CCpgSearchJob::x_SetupColumns (CObjectList &obj_list)
	add custom columns if needed More...
virtual CObjectListTableModel *	CCpgSearchJob::x_GetNewOLTModel () const
	factory method creating new column handler for CObjectListWidget More...

IUITool implementation
virtual IUITool *	CEntrezSearchTool::Clone () const
virtual string	CEntrezSearchTool::GetName () const
	returns unique name of the method that is used in UI to identify it More...
virtual string	CEntrezSearchTool::GetDescription () const
	returns a detailed description of the method that is used in UI More...

IDMSearchTool implementation
virtual CIRef< IDMSearchForm >	CEntrezSearchTool::CreateSearchForm ()
	factory method for creating a form representing the tool More...
virtual bool	CEntrezSearchTool::IsCompatible (IDataMiningContext *context)
	retuns true if the tool is compatible with the provided Search Context More...

IExtension implementation
virtual string	CEntrezSearchTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CEntrezSearchTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IDMSearchForm implementation
typedef pair< string, string >	CEntrezSearchForm::TStrPair
typedef vector< TStrPair >	CEntrezSearchForm::TNamePairs
CRef< CEntrezSearchTool >	CEntrezSearchForm::m_Tool
TNamePairs	CEntrezSearchForm::m_DbNames
string	CEntrezSearchForm::m_CurrDbName
	Entrez db names. More...
wxChoice *	CEntrezSearchForm::m_DbCombo
	techical name More...
virtual void	CEntrezSearchForm::Create ()
virtual void	CEntrezSearchForm::Init ()
virtual void	CEntrezSearchForm::Update ()
virtual CIRef< IDMSearchQuery >	CEntrezSearchForm::ConstructQuery ()
virtual wxSizer *	CEntrezSearchForm::GetWidget (wxWindow *parent)
	return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget) More...
virtual void	CEntrezSearchForm::UpdateContexts ()
	updates m_ContextCombo More...
virtual void	CEntrezSearchForm::x_LoadSettings (const CRegistryReadView &view)
virtual void	CEntrezSearchForm::x_SaveSettings (CRegistryWriteView view) const
IDMSearchTool *	CEntrezSearchForm::x_GetTool (void)

CSearchJobBase overridables
virtual bool	CEntrezSearchJob::x_ValidateParams ()
	returns true if Job params are correct, implement in derived classes More...
virtual EJobState	CEntrezSearchJob::x_DoSearch ()
	performs searching, assuming that params are correct; Implement in derived classes More...
virtual CObjectListTableModel *	CEntrezSearchJob::x_GetNewOLTModel () const
	factory method creating new column handler for CObjectListWidget More...

IFileLoadPanelClient interface implementation
virtual string	CFASTAFormatLoadManager::GetLabel () const
virtual wxString	CFASTAFormatLoadManager::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CFASTAFormatLoadManager::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CFASTAFormatLoadManager::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CFASTAFormatLoadManager::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CFASTAFormatLoadManager::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CFASTAFormatLoadManager::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CFASTAFormatLoadManager::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CFASTAFormatLoadManager::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CFASTAFormatLoadManager::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CFASTAFormatLoadManager::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CFASTAFormatLoadManager::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CFASTAFormatLoadManager::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CFASTAFormatLoadManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CFASTAFormatLoadManager::GetExecuteUnit ()
virtual IWizardPage *	CFASTAFormatLoadManager::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual IWizardPage *	CFASTAFormatLoadManager::GetOptionsPage ()
	Returns page for tool options (long wizard path via "Options" button) More...
virtual void	CFASTAFormatLoadManager::SetPrevPage (IWizardPage *prevPage)
	Sets a wizard page which should show before the first page of the tool. More...
virtual wxString	CFASTAFormatLoadManager::GetFormatWildcard ()
virtual bool	CFASTAFormatLoadManager::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CFASTAFormatLoadManager::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CFASTAFormatLoadManager::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CFASTAFormatLoadManager::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CFASTAFormatLoadManager::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CFASTAFormatLoadManager::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CFASTAFormatLoadManager::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CFASTAFormatLoadManager::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	CFASTAFormatLoadManager::SetRegistryPath (const string &path)
virtual void	CFASTAFormatLoadManager::LoadSettings ()
virtual void	CFASTAFormatLoadManager::SaveSettings () const

IUITool implementation
virtual IUITool *	CFeatureSearchTool::Clone () const
virtual string	CFeatureSearchTool::GetName () const
	returns unique name of the method that is used in UI to identify it More...
virtual string	CFeatureSearchTool::GetDescription () const
	returns a detailed description of the method that is used in UI More...

IDMSearchTool implementation
virtual CIRef< IDMSearchForm >	CFeatureSearchTool::CreateSearchForm ()
	factory method for creating a form representing the tool More...
virtual bool	CFeatureSearchTool::IsCompatible (IDataMiningContext *context)
	retuns true if the tool is compatible with the provided Search Context More...

IExtension implementation
virtual string	CFeatureSearchTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CFeatureSearchTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IDMSearchForm implementation
virtual void	CFeatureSearchForm::Create ()
virtual void	CFeatureSearchForm::Init ()
virtual void	CFeatureSearchForm::Update ()

CSearchFormBase overridables
typedef CFeatureSearchQuery::TFeatTypeItem	CFeatureSearchForm::TFeatTypeItem
typedef CFeatureSearchQuery::TFeatTypeItemSet	CFeatureSearchForm::TFeatTypeItemSet
typedef CSearchToolBase::EPatternType	CFeatureSearchForm::TPatternType
CRef< CFeatureSearchTool >	CFeatureSearchForm::m_Tool
wxChoice *	CFeatureSearchForm::m_DbCombo
wxChoice *	CFeatureSearchForm::m_TypeCombo
wxHyperlinkCtrl *	CFeatureSearchForm::m_HyperLink
vector< ISeqLocSearchContext * >	CFeatureSearchForm::m_SeqLocContexts
bool	CFeatureSearchForm::m_CaseSensitive
TPatternType	CFeatureSearchForm::m_PatternType
string	CFeatureSearchForm::m_SearchPattern
list< string >	CFeatureSearchForm::m_FeatureTypes
virtual void	CFeatureSearchForm::x_LoadSettings (const CRegistryReadView &view)
virtual void	CFeatureSearchForm::x_SaveSettings (CRegistryWriteView view) const
virtual IDMSearchTool *	CFeatureSearchForm::x_GetTool ()
virtual void	CFeatureSearchForm::x_CreateWidgets ()
virtual void	CFeatureSearchForm::UpdateContexts ()
	updates m_ContextCombo More...

IFileLoadPanelClient interface implementation
virtual string	CGffLoadManager::GetLabel () const
virtual wxString	CGffLoadManager::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CGffLoadManager::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CGffLoadManager::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CGffLoadManager::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CGffLoadManager::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CGffLoadManager::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CGffLoadManager::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CGffLoadManager::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CGffLoadManager::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CGffLoadManager::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CGffLoadManager::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CGffLoadManager::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CGffLoadManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CGffLoadManager::GetExecuteUnit ()
virtual IWizardPage *	CGffLoadManager::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual IWizardPage *	CGffLoadManager::GetOptionsPage ()
	Returns page for tool options (long wizard path via "Options" button) More...
virtual void	CGffLoadManager::SetPrevPage (IWizardPage *prevPage)
	Sets a wizard page which should show before the first page of the tool. More...
virtual wxString	CGffLoadManager::GetFormatWildcard ()
virtual bool	CGffLoadManager::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CGffLoadManager::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CGffLoadManager::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CGffLoadManager::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CGffLoadManager::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CGffLoadManager::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CGffLoadManager::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CGffLoadManager::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	CGffLoadManager::SetRegistryPath (const string &path)
virtual void	CGffLoadManager::LoadSettings ()
virtual void	CGffLoadManager::SaveSettings () const

IUITool implementation
virtual IUITool *	COrfSearchTool::Clone () const
virtual string	COrfSearchTool::GetName () const
	returns unique name of the method that is used in UI to identify it More...
virtual string	COrfSearchTool::GetDescription () const
	returns a detailed description of the method that is used in UI More...

IDMSearchTool implementation
virtual CIRef< IDMSearchForm >	COrfSearchTool::CreateSearchForm ()
	factory method for creating a form representing the tool More...
virtual bool	COrfSearchTool::IsCompatible (IDataMiningContext *context)
	retuns true if the tool is compatible with the provided Search Context More...
virtual IDMSearchTool::TUIToolFlags	COrfSearchTool::GetFlags (void)
	special flags More...

IExtension implementation
virtual string	COrfSearchTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	COrfSearchTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IDMSearchForm implementation
virtual void	COrfSearchForm::Create ()
virtual void	COrfSearchForm::Init ()
virtual void	COrfSearchForm::Update ()

CSearchJobBase overridables
virtual bool	COrfSearchJob::x_ValidateParams ()
	returns true if Job params are correct, implement in derived classes More...
virtual IAppJob::EJobState	COrfSearchJob::x_DoSearch ()
	performs searching, assuming that params are correct; Implement in derived classes More...
virtual void	COrfSearchJob::x_SetupColumns (CObjectList &obj_list)
	add custom columns if needed More...
virtual CObjectListTableModel *	COrfSearchJob::x_GetNewOLTModel () const
	factory method creating new column handler for CObjectListWidget More...

IUITool implementation
virtual IUITool *	CSequenceSearchTool::Clone () const
virtual string	CSequenceSearchTool::GetName () const
	returns unique name of the method that is used in UI to identify it More...
virtual string	CSequenceSearchTool::GetDescription () const
	returns a detailed description of the method that is used in UI More...

IDMSearchTool implementation
virtual CIRef< IDMSearchForm >	CSequenceSearchTool::CreateSearchForm ()
	factory method for creating a form representing the tool More...
virtual bool	CSequenceSearchTool::IsCompatible (IDataMiningContext *context)
	retuns true if the tool is compatible with the provided Search Context More...
virtual IDMSearchTool::TUIToolFlags	CSequenceSearchTool::GetFlags (void)
	special flags More...

IExtension implementation
virtual string	CSequenceSearchTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CSequenceSearchTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IDMSearchForm implementation
virtual void	CSequenceSearchForm::Create ()
virtual void	CSequenceSearchForm::Init ()
virtual void	CSequenceSearchForm::Update ()

CSearchJobBase overridables
virtual bool	CSequenceSearchJob::x_ValidateParams ()
	returns true if Job params are correct, implement in derived classes More...
virtual IAppJob::EJobState	CSequenceSearchJob::x_DoSearch ()
	performs searching, assuming that params are correct; Implement in derived classes More...
virtual void	CSequenceSearchJob::x_SetupColumns (CObjectList &obj_list)
	add custom columns if needed More...
virtual CObjectListTableModel *	CSequenceSearchJob::x_GetNewOLTModel () const
	factory method creating new column handler for CObjectListWidget More...

IGuiWidgetHost implementation
virtual void	CTextView::CloseWidget ()
	IGuiWidgetHost implementation. More...
virtual void	CTextView::WidgetSelectionChanged ()
virtual void	CTextView::WidgetActivated ()
virtual void	CTextView::GetAppSelection (TConstObjects &objects)
virtual void	CTextView::OnWidgetCommand (const string &command)
virtual void	CTextView::ShowView (const string &viewName, FWindowFactory widgetFactory, TConstScopedObjects &objects, bool bFloat)

ITextWidgetHost implementation
virtual void	CTextView::OnTextGotFocus ()
	ITextWidgetHost implementation. More...
virtual void	CTextView::OnTextLostFocus ()
virtual void	CTextView::OnTextPositionChanged (int row, int col)

IFlatFileCtrl interface implementation
virtual bool	CTextView::SetPosition (const string &seq, const CObject *object)
	IFlatFileCtrl implementation. More...
virtual bool	CTextView::SetPosition (const objects::CBioseq_Handle &h, const CObject *object)

IWMClient interface implementation
virtual wxWindow *	CTextView::GetWindow ()
	returns a pointer to the wxWindow representing the client More...
virtual wxEvtHandler *	CTextView::GetCommandHandler ()
	IWMClient implementation. More...

IMenuContributor interface implementation
virtual const wxMenu *	CTextView::GetMenu ()
	returns a menu (must be deleted by the caller) menu injections should follow a separator named "Contribs" More...

IView implementation
@(
virtual const CViewTypeDescriptor &	CTextView::GetTypeDescriptor () const
	return an object providing meta information about thei view type More...
virtual void	CTextView::CreateViewWindow (wxWindow *parent)
	create Window corresponding to the view More...
virtual void	CTextView::DestroyViewWindow ()
	destroy Window corresponding to the view More...

IProjectView implementation
virtual bool	CTextView::InitView (TConstScopedObjects &objects, const objects::CUser_object *params)
	initialize view with data, inside this function the view must call CProjectService::AttachView to connect to a project More...
virtual void	CTextView::OnProjectChanged (CProjectViewEvent &evt)

ISelectionClient Implementation
virtual void	CTextView::GetSelection (CSelectionEvent &evt) const
	get selection for broadcasting More...
virtual void	CTextView::GetSelection (TConstScopedObjects &objs) const
	shall return data objects representing selected things, return one data object for every selected thing. More...
virtual void	CTextView::GetMainObject (TConstScopedObjects &objs) const
	Adds the main data objects represented by the client to "objects". More...
virtual void	CTextView::GetActiveObjects (TConstScopedObjects &objects) const
virtual void	CTextView::GetActiveObjects (vector< TConstScopedObjects > &objects)
	Prioritized active objects. More...

IExtension interface implementation
virtual string	CTextViewFactory::GetExtensionIdentifier () const
	CTextViewFactory. More...
virtual string	CTextViewFactory::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IProjectViewFactory interface implementation
virtual IView *	CTextViewFactory::CreateInstance () const
	creates a view instance More...
virtual IView *	CTextViewFactory::CreateInstanceByFingerprint (const TFingerprint &fingerprint) const
	if fingerprint is recognized - creates and returns a new instance More...
virtual void	CTextViewFactory::RegisterIconAliases (wxFileArtProvider &provider)
	called by the framework to give Factory a chance to register images used by view More...
virtual void	CTextViewFactory::RegisterCommands (CUICommandRegistry &cmd_reg, wxFileArtProvider &provider)
	called by the framework to give Factory a chance to register commands used by view More...
virtual const CProjectViewTypeDescriptor &	CTextViewFactory::GetProjectViewTypeDescriptor () const
	returns a Descriptor for the View Type supported by the Factory More...
virtual int	CTextViewFactory::TestInputObjects (TConstScopedObjects &objects)
	tests input objects (not using object conversion) and returns a combination of ETestResult flags better name is IsCompatibleWith() More...

COpenViewManager implementation
virtual string	CTextViewFactory::GetTargetType () const
virtual bool	CTextViewFactory::AllowMerge () const

IFileLoadPanelClient interface implementation
virtual string	CVCFLoaderManager::GetLabel () const
virtual wxString	CVCFLoaderManager::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CVCFLoaderManager::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CVCFLoaderManager::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CVCFLoaderManager::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CVCFLoaderManager::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CVCFLoaderManager::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CVCFLoaderManager::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CVCFLoaderManager::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CVCFLoaderManager::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CVCFLoaderManager::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CVCFLoaderManager::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CVCFLoaderManager::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CVCFLoaderManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CVCFLoaderManager::GetExecuteUnit ()
virtual IWizardPage *	CVCFLoaderManager::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual IWizardPage *	CVCFLoaderManager::GetOptionsPage ()
	Returns page for tool options (long wizard path via "Options" button) More...
virtual void	CVCFLoaderManager::SetPrevPage (IWizardPage *prevPage)
	Sets a wizard page which should show before the first page of the tool. More...
virtual wxString	CVCFLoaderManager::GetFormatWildcard ()
virtual bool	CVCFLoaderManager::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CVCFLoaderManager::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CVCFLoaderManager::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CVCFLoaderManager::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CVCFLoaderManager::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CVCFLoaderManager::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CVCFLoaderManager::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CVCFLoaderManager::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	CVCFLoaderManager::SetRegistryPath (const string &path)
virtual void	CVCFLoaderManager::LoadSettings ()
virtual void	CVCFLoaderManager::SaveSettings () const

IUITool implementation
virtual IUITool *	CVcfSearchTool::Clone () const
virtual string	CVcfSearchTool::GetName () const
	returns unique name of the method that is used in UI to identify it More...
virtual string	CVcfSearchTool::GetDescription () const
	returns a detailed description of the method that is used in UI More...

IDMSearchTool implementation
virtual CIRef< IDMSearchForm >	CVcfSearchTool::CreateSearchForm ()
	factory method for creating a form representing the tool More...
virtual bool	CVcfSearchTool::IsCompatible (IDataMiningContext *context)
	retuns true if the tool is compatible with the provided Search Context More...

IExtension implementation
virtual string	CVcfSearchTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CVcfSearchTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IDMSearchForm implementation
virtual void	CVcfSearchForm::Create ()
virtual void	CVcfSearchForm::Init ()
virtual void	CVcfSearchForm::Update ()

CSearchFormBase overridables
virtual void	CVcfSearchForm::x_CreateWidgets ()
virtual IDMSearchTool *	CVcfSearchForm::x_GetTool ()

CSearchJobBase overridables
virtual bool	CVcfSearchJob::x_ValidateParams ()
	returns true if Job params are correct, implement in derived classes More...
virtual EJobState	CVcfSearchJob::x_DoSearch ()
	performs searching, assuming that params are correct; Implement in derived classes More...
virtual void	CVcfSearchJob::x_SetupColumns (CObjectList &obj_list)
	add custom columns if needed More...

IFileLoadPanelClient interface implementation
virtual string	CWigLoadManager::GetLabel () const
virtual wxString	CWigLoadManager::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CWigLoadManager::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CWigLoadManager::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CWigLoadManager::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CWigLoadManager::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CWigLoadManager::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CWigLoadManager::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CWigLoadManager::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CWigLoadManager::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CWigLoadManager::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CWigLoadManager::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CWigLoadManager::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CWigLoadManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CWigLoadManager::GetExecuteUnit ()
virtual IWizardPage *	CWigLoadManager::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual IWizardPage *	CWigLoadManager::GetOptionsPage ()
	Returns page for tool options (long wizard path via "Options" button) More...
virtual void	CWigLoadManager::SetPrevPage (IWizardPage *prevPage)
	Sets a wizard page which should show before the first page of the tool. More...
virtual wxString	CWigLoadManager::GetFormatWildcard ()
virtual bool	CWigLoadManager::ValidateFilenames (const vector< wxString > &)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CWigLoadManager::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CWigLoadManager::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CWigLoadManager::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CWigLoadManager::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CWigLoadManager::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CWigLoadManager::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CWigLoadManager::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	CWigLoadManager::SetRegistryPath (const string &path)
virtual void	CWigLoadManager::LoadSettings ()
virtual void	CWigLoadManager::SaveSettings () const

Detailed Description

Typedef Documentation

TData

typedef vector<pair<string, THandles> > CResolveIdDlg::TData

Definition at line 90 of file resolve_id_dlg.hpp.

TDescPatList

typedef list<TDescPattern> CSequenceSearchForm::TDescPatList

Definition at line 129 of file sequence_search_tool.hpp.

TDescPattern

typedef pair<string, string> CSequenceSearchForm::TDescPattern

Definition at line 128 of file sequence_search_tool.hpp.

TFeatTypeItem [1/3]

typedef objects::CFeatListItem CFeatureSearchQuery::TFeatTypeItem

Definition at line 99 of file feature_search_tool.hpp.

TFeatTypeItem [2/3]

typedef CFeatureSearchQuery::TFeatTypeItem CFeatureSearchForm::TFeatTypeItem

protected

Definition at line 161 of file feature_search_tool.hpp.

TFeatTypeItem [3/3]

typedef CFeatureSearchQuery::TFeatTypeItem CFeatureSearchJob::TFeatTypeItem

protected

Definition at line 193 of file feature_search_tool.hpp.

TFeatTypeItemSet [1/3]

typedef set<TFeatTypeItem> CFeatureSearchQuery::TFeatTypeItemSet

Definition at line 100 of file feature_search_tool.hpp.

TFeatTypeItemSet [2/3]

typedef CFeatureSearchQuery::TFeatTypeItemSet CFeatureSearchForm::TFeatTypeItemSet

protected

Definition at line 162 of file feature_search_tool.hpp.

TFeatTypeItemSet [3/3]

typedef CFeatureSearchQuery::TFeatTypeItemSet CFeatureSearchJob::TFeatTypeItemSet

protected

Definition at line 194 of file feature_search_tool.hpp.

TFileList

typedef map<string, TPattern> CSequenceSearchForm::TFileList

Definition at line 131 of file sequence_search_tool.hpp.

THandles

typedef vector<objects::CSeq_id_Handle> CResolveIdDlg::THandles

Definition at line 89 of file resolve_id_dlg.hpp.

TIdMap

typedef map<objects::CSeq_id_Handle, objects::CSeq_id_Handle> CResolveIdDlg::TIdMap

Definition at line 91 of file resolve_id_dlg.hpp.

TIdsVec

typedef vector< CRef<CObject> > CGenBankLoadOptionPanel::TIdsVec

Definition at line 143 of file gb_load_option_panel.hpp.

TKozakList

typedef list<TKozakPattern> COrfSearchForm::TKozakList

Definition at line 135 of file orf_search_tool.hpp.

TKozakPattern

typedef struct SKozakPattern COrfSearchForm::TKozakPattern

Definition at line 124 of file orf_search_tool.hpp.

TMRUAccList

typedef CTimeMRUList<CAccDescriptor> CGenBankLoadOptionPanel::TMRUAccList

Definition at line 97 of file gb_load_option_panel.hpp.

TNamePairs [1/2]

typedef vector<TStrPair> CSNPSearchForm::TNamePairs

protected

Definition at line 131 of file snp_search_tool.hpp.

TNamePairs [2/2]

typedef vector<TStrPair> CEntrezSearchForm::TNamePairs

protected

Definition at line 140 of file entrez_search_tool.hpp.

TPair [1/2]

typedef pair<const char*, const char*> CSNPSearchJob::TPair

Definition at line 141 of file snp_search_tool.hpp.

TPair [2/2]

typedef pair<const char*, const char*> CEntrezSearchJob::TPair

Definition at line 154 of file entrez_search_tool.hpp.

TPattern

typedef pair<wxString, TDescPatList> CSequenceSearchForm::TPattern

Definition at line 130 of file sequence_search_tool.hpp.

TPatternType [1/6]

typedef CFeatureSearchTool::EPatternType CFeatureSearchQuery::TPatternType

Definition at line 97 of file feature_search_tool.hpp.

TPatternType [2/6]

typedef CSearchToolBase::EPatternType CFeatureSearchForm::TPatternType

protected

Definition at line 174 of file feature_search_tool.hpp.

TPatternType [3/6]

typedef CSearchToolBase::EPatternType CFeatureSearchJob::TPatternType

protected

Definition at line 224 of file feature_search_tool.hpp.

TPatternType [4/6]

typedef CSequenceSearchTool::EPatternType CSequenceSearchQuery::TPatternType

Definition at line 99 of file sequence_search_tool.hpp.

TPatternType [5/6]

typedef CSearchToolBase::EPatternType CSequenceSearchForm::TPatternType

protected

Definition at line 168 of file sequence_search_tool.hpp.

TPatternType [6/6]

typedef CSearchToolBase::EPatternType CSequenceSearchJob::TPatternType

protected

Definition at line 215 of file sequence_search_tool.hpp.

TRangeCollection [1/3]

typedef CRangeCollection<TSeqPos> CCpgSearchJob::TRangeCollection

protected

Definition at line 183 of file cpg_search_tool.hpp.

TRangeCollection [2/3]

typedef CRangeCollection<TSeqPos> COrfSearchJob::TRangeCollection

protected

Definition at line 186 of file orf_search_tool.hpp.

TRangeCollection [3/3]

typedef set<pair<TSeqPos, TSeqPos> > CSequenceSearchJob::TRangeCollection

protected

Definition at line 190 of file sequence_search_tool.hpp.

TScopedLoc [1/5]

typedef CComponentSearchQuery::SScopedLoc CComponentSearchJob::TScopedLoc

protected

Definition at line 154 of file component_search_tool.hpp.

TScopedLoc [2/5]

typedef CCpgSearchQuery::SScopedLoc CCpgSearchJob::TScopedLoc

protected

Definition at line 181 of file cpg_search_tool.hpp.

TScopedLoc [3/5]

typedef CFeatureSearchQuery::SScopedLoc CFeatureSearchJob::TScopedLoc

protected

Definition at line 195 of file feature_search_tool.hpp.

TScopedLoc [4/5]

typedef COrfSearchQuery::SScopedLoc COrfSearchJob::TScopedLoc

protected

Definition at line 184 of file orf_search_tool.hpp.

TScopedLoc [5/5]

typedef CSequenceSearchQuery::SScopedLoc CSequenceSearchJob::TScopedLoc

protected

Definition at line 188 of file sequence_search_tool.hpp.

TScopedLocs [1/10]

typedef CComponentSearchQuery::TScopedLocs CComponentSearchForm::TScopedLocs

Definition at line 108 of file component_search_tool.hpp.

TScopedLocs [2/10]

typedef CComponentSearchQuery::TScopedLocs CComponentSearchJob::TScopedLocs

protected

Definition at line 155 of file component_search_tool.hpp.

TScopedLocs [3/10]

typedef CCpgSearchQuery::TScopedLocs CCpgSearchForm::TScopedLocs

Definition at line 129 of file cpg_search_tool.hpp.

TScopedLocs [4/10]

typedef CCpgSearchQuery::TScopedLocs CCpgSearchJob::TScopedLocs

protected

Definition at line 182 of file cpg_search_tool.hpp.

TScopedLocs [5/10]

typedef CFeatureSearchQuery::TScopedLocs CFeatureSearchForm::TScopedLocs

Definition at line 130 of file feature_search_tool.hpp.

TScopedLocs [6/10]

typedef CFeatureSearchQuery::TScopedLocs CFeatureSearchJob::TScopedLocs

protected

Definition at line 196 of file feature_search_tool.hpp.

TScopedLocs [7/10]

typedef COrfSearchQuery::TScopedLocs COrfSearchForm::TScopedLocs

Definition at line 124 of file orf_search_tool.hpp.

TScopedLocs [8/10]

typedef COrfSearchQuery::TScopedLocs COrfSearchJob::TScopedLocs

protected

Definition at line 185 of file orf_search_tool.hpp.

TScopedLocs [9/10]

typedef CSequenceSearchQuery::TScopedLocs CSequenceSearchForm::TScopedLocs

Definition at line 126 of file sequence_search_tool.hpp.

TScopedLocs [10/10]

typedef CSequenceSearchQuery::TScopedLocs CSequenceSearchJob::TScopedLocs

protected

Definition at line 189 of file sequence_search_tool.hpp.

TStrPair [1/2]

typedef pair<string, string> CSNPSearchForm::TStrPair

protected

Definition at line 130 of file snp_search_tool.hpp.

TStrPair [2/2]

typedef pair<string, string> CEntrezSearchForm::TStrPair

protected

Definition at line 139 of file entrez_search_tool.hpp.

Enumeration Type Documentation

anonymous enum

anonymous enum

Control identifiers.

Enumerator
ID_CRESOLVEIDDLG
ID_GRID

Definition at line 130 of file resolve_id_dlg.hpp.

anonymous enum

anonymous enum

Control identifiers.

Enumerator
ID_CCLEANUPPANEL
ID_LISTCTRL1
ID_RADIOBOX1

Definition at line 133 of file cleanup_panel.hpp.

anonymous enum

anonymous enum

Control identifiers.

Enumerator
ID_CFASTAFORMATPARAMSPANEL
ID_SEQ_TYPE
ID_LOWERCASE
ID_CHECKBOX1
ID_CHECKBOX2
ID_CHECKBOX8
ID_CHECKBOX4
ID_CHECKBOX5
ID_CHECKBOX

Definition at line 107 of file fasta_format_params_panel.hpp.

anonymous enum

anonymous enum

Control identifiers.

Enumerator
ID_CGENBANKLOADOPTIONPANEL
ID_ACC_INPUT
ID_HTMLWINDOW2

Definition at line 135 of file gb_load_option_panel.hpp.

anonymous enum

anonymous enum

Control identifiers.

Enumerator
ID_CGFFPARAMSPANEL
ID_CHOICE2
ID_TEXTCTRL1
ID_PANEL
ID_SEQ_ID_NORMAL
IDSEQ_ID_NUMERIC
ID_SEQ_ID_LOCAL
ID_PANEL7

Definition at line 133 of file gff_params_panel.hpp.

EGenBankCommands

enum EGenBankCommands

commands introduced by Net BLAST data source

Enumerator
eCmdLoadFromGenBank

Definition at line 60 of file gb_ui_data_source.hpp.

EState [1/9]

enum CGBFlatFileLoadManager::EState

protected

Enumerator
eInvalid
eParams
eCompleted

Definition at line 121 of file gb_flatfile_load_manager.hpp.

EState [2/9]

enum CGenBankUILoadManager::EState

protected

Enumerator
eInvalid
eSelectAcc
eSelectProject
eCompleted

Definition at line 192 of file gb_ui_data_source.hpp.

EState [3/9]

enum CAgpLoader::EState

protected

Enumerator
eInvalid
eParams
eCompleted

Definition at line 126 of file agp_loader.hpp.

EState [4/9]

enum CBedLoadManager::EState

protected

Enumerator
eInvalid
eParams
eCompleted

Definition at line 126 of file bed_load_manager.hpp.

EState [5/9]

enum CColumnarVCFLoaderManager::EState

protected

Enumerator
eInvalid
eAssembly
eInfoSelection
eSampleSelection
eRefSequences
eCompleted

Definition at line 130 of file columnar_vcf_load_manager.hpp.

EState [6/9]

enum CFASTAFormatLoadManager::EState

protected

Enumerator
eInvalid
eParams
eCompleted

Definition at line 125 of file fasta_format_load_manager.hpp.

EState [7/9]

enum CGffLoadManager::EState

protected

Enumerator
eInvalid
eParams
eCompleted

Definition at line 129 of file gff_load_manager.hpp.

EState [8/9]

enum CVCFLoaderManager::EState

protected

Enumerator
eInvalid
eParams
eCompleted

Definition at line 124 of file vcf_load_manager.hpp.

EState [9/9]

enum CWigLoadManager::EState

protected

Enumerator
eInvalid
eParams
eCompleted

Definition at line 126 of file wig_load_manager.hpp.

Function Documentation

Add()

void CChainLoader::Add

(

IObjectLoader *

loader

)

Definition at line 93 of file chain_loader.cpp.

References _ASSERT, CChainLoader::m_ExecuteUnits, and CChainLoader::m_Loaders.

Referenced by CGBLoadWizard::GetExecuteUnit(), and CGenBankUILoadManager::GetTask().

AllowMerge() [1/2]

virtual bool CSequinDesktopViewFactory::AllowMerge ( ) const

inlineprotectedvirtual

Definition at line 158 of file sequin_desktop_view.hpp.

AllowMerge() [2/2]

virtual bool CTextViewFactory::AllowMerge ( ) const

inlineprotectedvirtual

Definition at line 172 of file text_view.hpp.

AutoCreateDefaultDataSource()

bool CGenBankUIDataSourceType::AutoCreateDefaultDataSource ( )

virtual

returns "true" if this type needs to create a default instance of the Data Source at start-up

Implements IUIDataSourceType.

Definition at line 429 of file gb_ui_data_source.cpp.

C5ColLoadManager()

C5ColLoadManager::C5ColLoadManager

(

)

C5ColLoadManager.

Definition at line 45 of file 5col_load_manager.cpp.

References CFileExtensions::GetLabel(), CUIObject::Init(), CFileExtensions::k5Column, C5ColLoadManager::m_Descr, CUIObject::SetLogEvent(), and ToStdString().

C5ColObjectLoader()

C5ColObjectLoader::C5ColObjectLoader

(

const vector< wxString > &

filenames

)

Definition at line 51 of file 5col_object_loader.cpp.

CAccDescriptor()

CGenBankLoadOptionPanel::CAccDescriptor::CAccDescriptor ( const string &  accession )

inline

Definition at line 84 of file gb_load_option_panel.hpp.

CAgpLoader()

CAgpLoader::CAgpLoader

(

)

CAgpLoader.

Definition at line 49 of file agp_loader.cpp.

References CAgpLoader::m_Descr, and CUIObject::SetLogEvent().

CAgpObjectLoader()

CAgpObjectLoader::CAgpObjectLoader	(	const CAgpLoadParams &	params,
		const vector< wxString > &	filenames
	)

Definition at line 51 of file agp_object_loader.cpp.

CanDo() [1/12]

bool CGBFlatFileLoadManager::CanDo ( EAction  action )

virtual

Indicates whether given transition is possible in the current state.

Implements IUIToolManager.

Definition at line 132 of file gb_flatfile_load_manager.cpp.

References _ASSERT, IUIToolManager::eBack, CGBFlatFileLoadManager::eCompleted, IUIToolManager::eNext, CGBFlatFileLoadManager::eParams, and CGBFlatFileLoadManager::m_State.

CanDo() [2/12]

bool CGenBankUILoadManager::CanDo ( EAction  action )

virtual

Indicates whether given transition is possible in the current state.

Implements IUIToolManager.

Definition at line 520 of file gb_ui_data_source.cpp.

References _ASSERT, IUIToolManager::eBack, CGenBankUILoadManager::eCompleted, IUIToolManager::eNext, CGenBankUILoadManager::eSelectAcc, CGenBankUILoadManager::eSelectProject, and CGenBankUILoadManager::m_State.

CanDo() [3/12]

bool CPhyLoader::CanDo ( EAction  action )

virtual

Indicates whether given transition is possible in the current state.

Implements IUIToolManager.

Definition at line 110 of file phy_loader.cpp.

CanDo() [4/12]

bool CRMLoader::CanDo ( EAction  action )

virtual

Indicates whether given transition is possible in the current state.

Implements IUIToolManager.

Definition at line 110 of file rm_load_manager.cpp.

CanDo() [5/12]

bool C5ColLoadManager::CanDo ( EAction  action )

virtual

Indicates whether given transition is possible in the current state.

Implements IUIToolManager.

Definition at line 104 of file 5col_load_manager.cpp.

CanDo() [6/12]

bool CAgpLoader::CanDo ( EAction  action )

virtual

Indicates whether given transition is possible in the current state.

Implements IUIToolManager.

Definition at line 125 of file agp_loader.cpp.

References _ASSERT, IUIToolManager::eBack, CAgpLoader::eCompleted, IUIToolManager::eNext, CAgpLoader::eParams, and CAgpLoader::m_State.

CanDo() [7/12]

bool CBedLoadManager::CanDo ( EAction  action )

virtual

Indicates whether given transition is possible in the current state.

Implements IUIToolManager.

Definition at line 126 of file bed_load_manager.cpp.

References _ASSERT, IUIToolManager::eBack, CBedLoadManager::eCompleted, IUIToolManager::eNext, CBedLoadManager::eParams, and CBedLoadManager::m_State.

CanDo() [8/12]

bool CColumnarVCFLoaderManager::CanDo ( EAction  action )

virtual

Indicates whether given transition is possible in the current state.

Implements IUIToolManager.

Definition at line 240 of file columnar_vcf_load_manager.cpp.

References _ASSERT, CColumnarVCFLoaderManager::eAssembly, IUIToolManager::eBack, CColumnarVCFLoaderManager::eCompleted, CColumnarVCFLoaderManager::eInfoSelection, IUIToolManager::eNext, CColumnarVCFLoaderManager::eRefSequences, CColumnarVCFLoaderManager::eSampleSelection, and CColumnarVCFLoaderManager::m_State.

CanDo() [9/12]

bool CFASTAFormatLoadManager::CanDo ( EAction  action )

virtual

Indicates whether given transition is possible in the current state.

Implements IUIToolManager.

Definition at line 139 of file fasta_format_load_manager.cpp.

References _ASSERT, IUIToolManager::eBack, CFASTAFormatLoadManager::eCompleted, IUIToolManager::eNext, CFASTAFormatLoadManager::eParams, and CFASTAFormatLoadManager::m_State.

CanDo() [10/12]

bool CGffLoadManager::CanDo ( EAction  action )

virtual

Indicates whether given transition is possible in the current state.

Implements IUIToolManager.

Definition at line 129 of file gff_load_manager.cpp.

References _ASSERT, IUIToolManager::eBack, CGffLoadManager::eCompleted, IUIToolManager::eNext, CGffLoadManager::eParams, and CGffLoadManager::m_State.

CanDo() [11/12]

bool CVCFLoaderManager::CanDo ( EAction  action )

virtual

Indicates whether given transition is possible in the current state.

Implements IUIToolManager.

Definition at line 126 of file vcf_load_manager.cpp.

References _ASSERT, IUIToolManager::eBack, CVCFLoaderManager::eCompleted, IUIToolManager::eNext, CVCFLoaderManager::eParams, and CVCFLoaderManager::m_State.

CanDo() [12/12]

bool CWigLoadManager::CanDo ( EAction  action )

virtual

Indicates whether given transition is possible in the current state.

Implements IUIToolManager.

Definition at line 127 of file wig_load_manager.cpp.

References _ASSERT, IUIToolManager::eBack, CWigLoadManager::eCompleted, IUIToolManager::eNext, CWigLoadManager::eParams, and CWigLoadManager::m_State.

CanLeavePage() [1/7]

bool CGBFlatFileLoadManager::CPage::CanLeavePage ( bool  )

virtual

Implements IWizardPage.

Definition at line 48 of file gb_flatfile_load_manager.cpp.

References CGBFlatFileParamsPanel::GetData().

CanLeavePage() [2/7]

virtual bool CAgpLoader::CPage::CanLeavePage ( bool  )

inlinevirtual

Implements IWizardPage.

Definition at line 138 of file agp_loader.hpp.

CanLeavePage() [3/7]

virtual bool CBedLoadManager::CPage::CanLeavePage ( bool  )

inlinevirtual

Implements IWizardPage.

Definition at line 138 of file bed_load_manager.hpp.

CanLeavePage() [4/7]

bool CFASTAFormatLoadManager::CPage::CanLeavePage ( bool  )

virtual

Implements IWizardPage.

Definition at line 49 of file fasta_format_load_manager.cpp.

References CFASTAFormatParamsPanel::GetData(), and CFASTAFormatParamsPanel::TransferDataFromWindow().

CanLeavePage() [5/7]

virtual bool CGffLoadManager::CPage::CanLeavePage ( bool  )

inlinevirtual

Implements IWizardPage.

Definition at line 141 of file gff_load_manager.hpp.

CanLeavePage() [6/7]

virtual bool CVCFLoaderManager::CPage::CanLeavePage ( bool  )

inlinevirtual

Implements IWizardPage.

Definition at line 136 of file vcf_load_manager.hpp.

CanLeavePage() [7/7]

virtual bool CWigLoadManager::CPage::CanLeavePage ( bool  )

inlinevirtual

Implements IWizardPage.

Definition at line 138 of file wig_load_manager.hpp.

CAssemblyObjectLoader()

CAssemblyObjectLoader::CAssemblyObjectLoader

(

const vector< string > &

accessions

)

Definition at line 53 of file assembly_object_loader.cpp.

References i, CAssemblyObjectLoader::m_Accessions, and CAssemblyObjectLoader::m_Descr.

CAutodefJob()

CAutodefJob::CAutodefJob	(	CProjectService *	service,
		const SAutodefParams &	params
	)

CAutodefJob.

Definition at line 209 of file autodef_tool_manager.cpp.

References CAppJob::m_Descr, and CAppJob::m_Mutex.

CAutodefToolManager()

CAutodefToolManager::CAutodefToolManager

(

)

CAutodefToolManager.

Definition at line 59 of file autodef_tool_manager.cpp.

References CAlgoToolManagerBase::m_Descriptor, and CUIObject::SetLogEvent().

CBedLoadManager()

CBedLoadManager::CBedLoadManager

(

)

CBedLoadManager.

Definition at line 50 of file bed_load_manager.cpp.

References CBedLoadManager::m_Descr, and CUIObject::SetLogEvent().

CBedObjectLoader()

CBedObjectLoader::CBedObjectLoader	(	const CBedLoadParams &	params,
		const vector< wxString > &	filenames
	)

Definition at line 54 of file bed_object_loader.cpp.

CCleanupPanel() [1/2]

CCleanupPanel::CCleanupPanel

(

)

Constructors.

CCleanupPanel type definition

CCleanupPanel event table definition

CCleanupPanel constructors

Definition at line 69 of file cleanup_panel.cpp.

References Init().

CCleanupPanel() [2/2]

CCleanupPanel::CCleanupPanel	(	wxWindow *	parent,
		wxWindowID	id = ID_CCLEANUPPANEL,
		const wxPoint &	pos = wxDefaultPosition,
		const wxSize &	size = wxSize(400, 300),
		long	style = wxTAB_TRAVERSAL
	)

Definition at line 74 of file cleanup_panel.cpp.

References CCleanupPanel::Create(), CCleanupPanel::Init(), and ncbi::grid::netcache::search::fields::size.

CCleanupParams() [1/2]

CCleanupParams::CCleanupParams

(

)

Default constructor for CCleanupParams.

CCleanupParams type definition

Default constructor for CCleanupParams

Definition at line 46 of file cleanup_params.cpp.

References CCleanupParams::Init().

CCleanupParams() [2/2]

CCleanupParams::CCleanupParams

(

const CCleanupParams &

data

)

Copy constructor for CCleanupParams.

Copy constructor for CCleanupParams

Definition at line 55 of file cleanup_params.cpp.

References CCleanupParams::Copy(), data, and CCleanupParams::Init().

CCleanupTool()

CCleanupTool::CCleanupTool

(

)

CCleanupTool.

Definition at line 55 of file cleanup_tool.cpp.

CColumnarVCFLoaderManager()

CColumnarVCFLoaderManager::CColumnarVCFLoaderManager

(

)

CColumnarVCFLoaderManager.

Definition at line 128 of file columnar_vcf_load_manager.cpp.

References CColumnarVCFLoaderManager::m_Descr, and CUIObject::SetLogEvent().

CComponentSearchForm()

CComponentSearchForm::CComponentSearchForm

(

CComponentSearchTool &

tool

)

CComponentSearchForm.

Definition at line 143 of file component_search_tool.cpp.

CComponentSearchJob()

CComponentSearchJob::CComponentSearchJob

(

CComponentSearchQuery &

query

)

CComponentSearchJob.

Definition at line 267 of file component_search_tool.cpp.

References CLabel::eDefault, CComponentSearchQuery::GetIds(), CLabel::GetLabel(), CSearchQueryBase::GetScopedLocs(), CSearchJobBase::m_Descr, CComponentSearchJob::m_Query, and NON_CONST_ITERATE.

CComponentSearchQuery()

CComponentSearchQuery::CComponentSearchQuery	(	TScopedLocs &	locs,
		const string &	ids
	)

CComponentSearchQuery.

Definition at line 133 of file component_search_tool.cpp.

CComponentSearchTool()

CComponentSearchTool::CComponentSearchTool

(

)

IDMSearchTool.

Definition at line 68 of file component_search_tool.cpp.

Referenced by CComponentSearchTool::Clone().

CCpgSearchForm()

CCpgSearchForm::CCpgSearchForm

(

CCpgSearchTool &

tool

)

CCpgSearchForm.

Definition at line 292 of file cpg_search_tool.cpp.

CCpgSearchJob()

CCpgSearchJob::CCpgSearchJob

(

CCpgSearchQuery &

query

)

CCpgSearchJob.

Definition at line 525 of file cpg_search_tool.cpp.

CCpgSearchQuery()

CCpgSearchQuery::CCpgSearchQuery	(	TScopedLocs &	locs,
		const string &	xSizeOfSlidingWindow,
		const string &	xMinLenOfIsland,
		const string &	xMinGC,
		const string &	xMinPercentage,
		const string &	xAdjMergeThreshold
	)

CCpgSearchQuery.

Definition at line 254 of file cpg_search_tool.cpp.

CCpgSearchTool()

CCpgSearchTool::CCpgSearchTool

(

)

CCpgSearchTool.

Definition at line 186 of file cpg_search_tool.cpp.

References CSeqFeatData::eSubtype_region, CSearchToolBase::m_Conversions, IDMSearchTool::TConversions::options, and IDMSearchTool::TConversions::selected.

Referenced by CCpgSearchTool::Clone().

CEntrezSearchForm() [1/2]

CEntrezSearchForm::CEntrezSearchForm ( )

inline

Definition at line 113 of file entrez_search_tool.hpp.

CEntrezSearchForm() [2/2]

CEntrezSearchForm::CEntrezSearchForm

(

CEntrezSearchTool &

tool

)

CEntrezSearchForm.

Definition at line 155 of file entrez_search_tool.cpp.

CEntrezSearchJob()

CEntrezSearchJob::CEntrezSearchJob

(

CEntrezSearchQuery &

query

)

CEntrezSearchJob.

Definition at line 266 of file entrez_search_tool.cpp.

References CEntrezSearchQuery::GetDbName(), CEntrezSearchQuery::GetTerms(), CEntrezDB::GetVisibleName(), CSearchJobBase::m_Descr, and CEntrezSearchJob::m_Query.

CEntrezSearchQuery()

CEntrezSearchQuery::CEntrezSearchQuery	(	const string &	terms,
		const string &	db_name
	)

CEntrezSearchTool.

Definition at line 145 of file entrez_search_tool.cpp.

CEntrezSearchTool()

CEntrezSearchTool::CEntrezSearchTool

(

)

IDMSearchTool.

Definition at line 85 of file entrez_search_tool.cpp.

Referenced by CEntrezSearchTool::Clone().

CFASTAFormatLoadManager()

CFASTAFormatLoadManager::CFASTAFormatLoadManager

(

)

CFASTAFormatLoadManager.

Definition at line 63 of file fasta_format_load_manager.cpp.

References CFASTAFormatLoadManager::m_Descr, and CUIObject::SetLogEvent().

CFASTAFormatParamsPanel() [1/2]

CFASTAFormatParamsPanel::CFASTAFormatParamsPanel

(

)

CFASTAFormatParamsPanel.

Definition at line 63 of file fasta_format_params_panel.cpp.

References Init().

CFASTAFormatParamsPanel() [2/2]

CFASTAFormatParamsPanel::CFASTAFormatParamsPanel	(	wxWindow *	parent,
		wxWindowID	id = ID_CFASTAFORMATPARAMSPANEL,
		const wxPoint &	pos = wxDefaultPosition,
		const wxSize &	size = wxSize(400, 300),
		long	style = wxTAB_TRAVERSAL
	)

Definition at line 69 of file fasta_format_params_panel.cpp.

References CFASTAFormatParamsPanel::Create(), CFASTAFormatParamsPanel::Init(), and ncbi::grid::netcache::search::fields::size.

CFastaLoadParams() [1/2]

CFastaLoadParams::CFastaLoadParams

(

)

Default constructor for CFastaLoadParams.

CFastaLoadParams type definition

Default constructor for CFastaLoadParams

Definition at line 46 of file fasta_load_params.cpp.

References CFastaLoadParams::Init().

CFastaLoadParams() [2/2]

CFastaLoadParams::CFastaLoadParams

(

const CFastaLoadParams &

data

)

Copy constructor for CFastaLoadParams.

Copy constructor for CFastaLoadParams

Definition at line 55 of file fasta_load_params.cpp.

References CFastaLoadParams::Copy(), data, and CFastaLoadParams::Init().

CFeatTableView()

CFeatTableView::CFeatTableView

(

)

CFeatTableView.

Definition at line 149 of file view_feattable.cpp.

CFeatureSearchForm()

CFeatureSearchForm::CFeatureSearchForm

(

CFeatureSearchTool &

tool

)

Definition at line 172 of file feature_search_tool.cpp.

CFeatureSearchJob()

CFeatureSearchJob::CFeatureSearchJob

(

CFeatureSearchQuery &

query

)

CFeatureSearchJob.

Definition at line 400 of file feature_search_tool.cpp.

References CLabel::eDefault, CLabel::GetLabel(), CSearchJobBase::m_Descr, CFeatureSearchJob::m_Query, and NON_CONST_ITERATE.

CFeatureSearchQuery()

CFeatureSearchQuery::CFeatureSearchQuery	(	TScopedLocs &	locs,
		const string &	pattern,
		bool	case_sensitive,
		TPatternType	pt_type,
		const TFeatTypeItemSet &	feat_types
	)

CFeatureSearchQuery.

Definition at line 138 of file feature_search_tool.cpp.

CFeatureSearchTool()

CFeatureSearchTool::CFeatureSearchTool

(

)

CFeatureSearchTool.

Definition at line 73 of file feature_search_tool.cpp.

Referenced by CFeatureSearchTool::Clone().

CGBFlatFileLoadManager()

CGBFlatFileLoadManager::CGBFlatFileLoadManager

(

)

CGBFlatFileLoadManager.

Definition at line 62 of file gb_flatfile_load_manager.cpp.

References CGBFlatFileLoadManager::m_Descr, and CUIObject::SetLogEvent().

CGBFlatFileObjectLoader() [1/2]

CGBFlatFileObjectLoader::CGBFlatFileObjectLoader

(

const CGBFlatFileLoadParams &

params

)

Definition at line 51 of file gb_flatfile_object_loader.cpp.

CGBFlatFileObjectLoader() [2/2]

CGBFlatFileObjectLoader::CGBFlatFileObjectLoader	(	const CGBFlatFileLoadParams &	params,
		const vector< wxString > &	filenames
	)

Definition at line 56 of file gb_flatfile_object_loader.cpp.

CGBObjectLoader()

CGBObjectLoader::CGBObjectLoader	(	const vector< CRef< CObject > > &	ids,
		const vector< string > &	NAs
	)

Definition at line 47 of file gb_object_loader.cpp.

CGenBankLoadOptionPanel() [1/2]

CGenBankLoadOptionPanel::CGenBankLoadOptionPanel

(

)

Definition at line 78 of file gb_load_option_panel.cpp.

References Init().

CGenBankLoadOptionPanel() [2/2]

CGenBankLoadOptionPanel::CGenBankLoadOptionPanel	(	wxWindow *	parent,
		wxWindowID	id = ID_CGENBANKLOADOPTIONPANEL,
		const wxPoint &	pos = wxDefaultPosition,
		const wxSize &	size = wxSize(266, 184),
		long	style = wxTAB_TRAVERSAL
	)

Definition at line 83 of file gb_load_option_panel.cpp.

References CGenBankLoadOptionPanel::Create(), CGenBankLoadOptionPanel::Init(), and ncbi::grid::netcache::search::fields::size.

CGenBankUIDataSource()

CGenBankUIDataSource::CGenBankUIDataSource

(

CGenBankUIDataSourceType &

type

)

Definition at line 110 of file gb_ui_data_source.cpp.

CGenBankUIDataSourceType()

CGenBankUIDataSourceType::CGenBankUIDataSourceType

(

)

CGenBankUIDataSourceType.

Definition at line 408 of file gb_ui_data_source.cpp.

References GetDefaultFileArtProvider(), kGB_DS_Icon, wxFileArtProvider::RegisterFileAlias(), ToWxString(), and wxT.

CGenBankUILoadManager()

CGenBankUILoadManager::CGenBankUILoadManager

(

)

CGenBankUILoadManager.

Definition at line 451 of file gb_ui_data_source.cpp.

References CGenBankUILoadManager::m_Descriptor, and CUIObject::SetLogEvent().

CGffLoadManager()

CGffLoadManager::CGffLoadManager

(

)

CGffLoadManager.

Definition at line 51 of file gff_load_manager.cpp.

References CFileExtensions::GetLabel(), CUIObject::Init(), CFileExtensions::kGFF, CGffLoadManager::m_Descr, CUIObject::SetLogEvent(), and ToStdString().

CGffLoadParams() [1/2]

CGffLoadParams::CGffLoadParams

(

)

Default constructor for CGffLoadParams.

CGffLoadParams type definition

Default constructor for CGffLoadParams

Definition at line 48 of file gff_load_params.cpp.

References CGffLoadParams::Init().

CGffLoadParams() [2/2]

CGffLoadParams::CGffLoadParams

(

const CGffLoadParams &

data

)

Copy constructor for CGffLoadParams.

Copy constructor for CGffLoadParams

Definition at line 57 of file gff_load_params.cpp.

References CGffLoadParams::Copy(), data, and CGffLoadParams::Init().

CGffObjectLoader()

CGffObjectLoader::CGffObjectLoader	(	const CGffLoadParams &	params,
		const vector< wxString > &	filenames
	)

Definition at line 56 of file gff_object_loader.cpp.

CGffParamsPanel() [1/2]

CGffParamsPanel::CGffParamsPanel

(

)

Constructors.

CGffParamsPanel type definition

CGffParamsPanel event table definition

CGffParamsPanel constructors

Definition at line 85 of file gff_params_panel.cpp.

References Init().

CGffParamsPanel() [2/2]

CGffParamsPanel::CGffParamsPanel	(	wxWindow *	parent,
		wxWindowID	id = ID_CGFFPARAMSPANEL,
		const wxPoint &	pos = wxDefaultPosition,
		const wxSize &	size = wxSize(400, 500),
		long	style = wxTAB_TRAVERSAL
	)

Definition at line 90 of file gff_params_panel.cpp.

References CGffParamsPanel::Create(), CGffParamsPanel::Init(), and ncbi::grid::netcache::search::fields::size.

CleanUI() [1/16]

void CCleanupTool::CleanUI ( )

virtual

override this function in a derived class and clean extra members

Reimplemented from CAlgoToolManagerBase.

Definition at line 85 of file cleanup_tool.cpp.

References CAlgoToolManagerBase::CleanUI(), CCleanupTool::m_Panel, and NULL.

CleanUI() [2/16]

void CGBFlatFileLoadManager::CleanUI ( )

virtual

CleanUI() is called after the host finished using the manager.

This function shall free resources associated with the session and reset internal state.

Implements IUIToolManager.

Definition at line 111 of file gb_flatfile_load_manager.cpp.

References CGBFlatFileLoadManager::eInvalid, CGBFlatFileLoadManager::m_ParamsPanel, and CGBFlatFileLoadManager::m_State.

CleanUI() [3/16]

void CGenBankUILoadManager::CleanUI ( )

virtual

CleanUI() is called after the host finished using the manager.

This function shall free resources associated with the session and reset internal state.

Implements IUIToolManager.

Definition at line 487 of file gb_ui_data_source.cpp.

References CGenBankUILoadManager::eInvalid, CGenBankUILoadManager::m_OptionPanel, CGenBankUILoadManager::m_ProjectSelPanel, CGenBankUILoadManager::m_State, and NULL.

CleanUI() [4/16]

void CMergeTool::CleanUI ( )

virtual

override this function in a derived class and clean extra members

Reimplemented from CAlgoToolManagerBase.

Definition at line 85 of file merge_tool.cpp.

References CAlgoToolManagerBase::CleanUI(), CMergeTool::m_Panel, and NULL.

CleanUI() [5/16]

void CAutodefToolManager::CleanUI ( )

virtual

override this function in a derived class and clean extra members

Reimplemented from CAlgoToolManagerBase.

Definition at line 92 of file autodef_tool_manager.cpp.

References CAlgoToolManagerBase::CleanUI(), CAutodefToolManager::m_ParamsPanel, and NULL.

CleanUI() [6/16]

void CSrcEditTool::CleanUI ( )

virtual

override this function in a derived class and clean extra members

Reimplemented from CAlgoToolManagerBase.

Definition at line 94 of file srcedit_tool.cpp.

References CAlgoToolManagerBase::CleanUI(), CSrcEditTool::m_Panel, and NULL.

CleanUI() [7/16]

void CPhyLoader::CleanUI ( )

virtual

CleanUI() is called after the host finished using the manager.

This function shall free resources associated with the session and reset internal state.

Implements IUIToolManager.

Definition at line 98 of file phy_loader.cpp.

CleanUI() [8/16]

void CRMLoader::CleanUI ( )

virtual

CleanUI() is called after the host finished using the manager.

This function shall free resources associated with the session and reset internal state.

Implements IUIToolManager.

Definition at line 98 of file rm_load_manager.cpp.

CleanUI() [9/16]

void C5ColLoadManager::CleanUI ( )

virtual

CleanUI() is called after the host finished using the manager.

This function shall free resources associated with the session and reset internal state.

Implements IUIToolManager.

Definition at line 94 of file 5col_load_manager.cpp.

CleanUI() [10/16]

void CAgpLoader::CleanUI ( )

virtual

CleanUI() is called after the host finished using the manager.

This function shall free resources associated with the session and reset internal state.

Implements IUIToolManager.

Definition at line 103 of file agp_loader.cpp.

References CAgpLoader::eInvalid, CAgpLoader::m_ParamsPanel, CAgpLoader::m_State, and NULL.

CleanUI() [11/16]

void CBedLoadManager::CleanUI ( )

virtual

CleanUI() is called after the host finished using the manager.

This function shall free resources associated with the session and reset internal state.

Implements IUIToolManager.

Definition at line 104 of file bed_load_manager.cpp.

References CBedLoadManager::eInvalid, CBedLoadManager::m_ParamsPanel, CBedLoadManager::m_State, and NULL.

CleanUI() [12/16]

void CColumnarVCFLoaderManager::CleanUI ( )

virtual

CleanUI() is called after the host finished using the manager.

This function shall free resources associated with the session and reset internal state.

Implements IUIToolManager.

Definition at line 184 of file columnar_vcf_load_manager.cpp.

References CColumnarVCFLoaderManager::eInvalid, CColumnarVCFLoaderManager::m_AssemblyPanel, CColumnarVCFLoaderManager::m_ColumnsPanel, CColumnarVCFLoaderManager::m_RefSequencesPanel, CColumnarVCFLoaderManager::m_SamplesPanel, and CColumnarVCFLoaderManager::m_State.

CleanUI() [13/16]

void CFASTAFormatLoadManager::CleanUI ( )

virtual

CleanUI() is called after the host finished using the manager.

This function shall free resources associated with the session and reset internal state.

Implements IUIToolManager.

Definition at line 117 of file fasta_format_load_manager.cpp.

References CFASTAFormatLoadManager::eInvalid, CFASTAFormatLoadManager::m_ParamsPanel, CFASTAFormatLoadManager::m_State, and NULL.

CleanUI() [14/16]

void CGffLoadManager::CleanUI ( )

virtual

CleanUI() is called after the host finished using the manager.

This function shall free resources associated with the session and reset internal state.

Implements IUIToolManager.

Definition at line 107 of file gff_load_manager.cpp.

References CGffLoadManager::eInvalid, CGffLoadManager::m_ParamsPanel, CGffLoadManager::m_State, and NULL.

CleanUI() [15/16]

void CVCFLoaderManager::CleanUI ( )

virtual

CleanUI() is called after the host finished using the manager.

This function shall free resources associated with the session and reset internal state.

Implements IUIToolManager.

Definition at line 105 of file vcf_load_manager.cpp.

References CVCFLoaderManager::eInvalid, CVCFLoaderManager::m_ParamsPanel, CVCFLoaderManager::m_State, and NULL.

CleanUI() [16/16]

void CWigLoadManager::CleanUI ( )

virtual

CleanUI() is called after the host finished using the manager.

This function shall free resources associated with the session and reset internal state.

Implements IUIToolManager.

Definition at line 104 of file wig_load_manager.cpp.

References CWigLoadManager::eInvalid, CWigLoadManager::m_ParamsPanel, CWigLoadManager::m_State, and NULL.

Clone() [1/8]

IUITool * CSNPSearchTool::Clone ( void  ) const

virtual

Implements CSearchToolBase.

Definition at line 95 of file snp_search_tool.cpp.

References CSNPSearchTool::CSNPSearchTool().

Clone() [2/8]

IUITool * CComponentSearchTool::Clone ( void  ) const

virtual

Implements CSearchToolBase.

Definition at line 80 of file component_search_tool.cpp.

References CComponentSearchTool::CComponentSearchTool().

Clone() [3/8]

IUITool * CCpgSearchTool::Clone ( void  ) const

virtual

Implements CSearchToolBase.

Definition at line 201 of file cpg_search_tool.cpp.

References CCpgSearchTool::CCpgSearchTool().

Clone() [4/8]

IUITool * CEntrezSearchTool::Clone ( void  ) const

virtual

Implements CSearchToolBase.

Definition at line 90 of file entrez_search_tool.cpp.

References CEntrezSearchTool::CEntrezSearchTool().

Clone() [5/8]

IUITool * CFeatureSearchTool::Clone ( void  ) const

virtual

Implements CSearchToolBase.

Definition at line 85 of file feature_search_tool.cpp.

References CFeatureSearchTool::CFeatureSearchTool().

Clone() [6/8]

IUITool * COrfSearchTool::Clone ( void  ) const

virtual

Implements CSearchToolBase.

Definition at line 179 of file orf_search_tool.cpp.

References COrfSearchTool::COrfSearchTool().

Clone() [7/8]

IUITool * CSequenceSearchTool::Clone ( void  ) const

virtual

Implements CSearchToolBase.

Definition at line 126 of file sequence_search_tool.cpp.

References CSequenceSearchTool::CSequenceSearchTool().

Clone() [8/8]

IUITool * CVcfSearchTool::Clone ( void  ) const

virtual

Implements CSearchToolBase.

Definition at line 81 of file vcf_search_tool.cpp.

References CVcfSearchTool::CVcfSearchTool().

Close()

bool CGenBankUIDataSource::Close ( void  )

virtual

Implements IUIDataSource.

Definition at line 339 of file gb_ui_data_source.cpp.

References CGBDataLoader::CloseCache(), Error(), CExtensionRegistry::GetInstance(), kAppExpCmdExtPoint, LOG_POST, CGenBankUIDataSource::m_ObjMgr, CGenBankUIDataSource::m_Open, CObject::ReferencedOnlyOnce(), and CRef< C, Locker >::Release().

CloseWidget() [1/2]

void CSequinDesktopView::CloseWidget ( )

virtual

IGuiWidgetHost implementation.

Implements IGuiWidgetHost.

Definition at line 252 of file sequin_desktop_view.cpp.

References IServiceLocator::GetServiceByType(), CProjectViewBase::m_Workbench, and CProjectService::RemoveProjectView().

CloseWidget() [2/2]

void CTextView::CloseWidget ( )

virtual

IGuiWidgetHost implementation.

Implements IGuiWidgetHost.

Definition at line 321 of file text_view.cpp.

References IServiceLocator::GetServiceByType(), CProjectViewBase::m_Workbench, and CProjectService::RemoveProjectView().

CMergeTool()

CMergeTool::CMergeTool

(

)

CCleanupTool.

Definition at line 55 of file merge_tool.cpp.

ConstructQuery() [1/8]

CIRef< IDMSearchQuery > CSNPSearchForm::ConstructQuery ( )

virtual

Reimplemented from CSearchFormBase.

Definition at line 212 of file snp_search_tool.cpp.

References CSearchFormBase::m_Text, and ToStdString().

ConstructQuery() [2/8]

CIRef< IDMSearchQuery > CComponentSearchForm::ConstructQuery ( )

virtual

Reimplemented from CSearchFormBase.

Definition at line 215 of file component_search_tool.cpp.

References _ASSERT, IDataMiningContext::GetDMContextName(), ISeqLocSearchContext::GetSearchLoc(), ISeqLocSearchContext::GetSearchScope(), i, CRef< C, Locker >::IsNull(), CSearchFormBase::m_bRange, CSearchQueryBase::SScopedLoc::m_ContextName, CSearchFormBase::m_Contexts, CComponentSearchForm::m_DbCombo, CSearchQueryBase::SScopedLoc::m_Loc, CSearchQueryBase::SScopedLoc::m_Scope, CComponentSearchForm::m_SeqLocContexts, CSearchFormBase::m_Text, CSeq_loc::SetWhole(), and ToStdString().

ConstructQuery() [3/8]

CIRef< IDMSearchQuery > CCpgSearchForm::ConstructQuery ( )

virtual

Reimplemented from CSearchFormBase.

Definition at line 469 of file cpg_search_tool.cpp.

References _ASSERT, IDataMiningContext::GetDMContextName(), ISeqLocSearchContext::GetSearchLoc(), ISeqLocSearchContext::GetSearchScope(), i, CRef< C, Locker >::IsNull(), CCpgSearchForm::m_AdjMergeThresholdCtl, CSearchFormBase::m_bRange, CSearchQueryBase::SScopedLoc::m_ContextName, CSearchFormBase::m_Contexts, CCpgSearchForm::m_DbCombo, CSearchQueryBase::SScopedLoc::m_Loc, CCpgSearchForm::m_MinGCCtl, CCpgSearchForm::m_MinLenOfIslandCtl, CCpgSearchForm::m_MinPercentageCtl, CSearchQueryBase::SScopedLoc::m_Scope, CCpgSearchForm::m_SeqLocContexts, CCpgSearchForm::m_SizeOfSlidingWindowCtl, CSeq_loc::SetWhole(), and ToStdString().

ConstructQuery() [4/8]

CIRef< IDMSearchQuery > CEntrezSearchForm::ConstructQuery ( )

virtual

Reimplemented from CSearchFormBase.

Definition at line 252 of file entrez_search_tool.cpp.

References dbname(), CEntrezSearchForm::m_DbCombo, CSearchFormBase::m_Text, and ToStdString().

ConstructQuery() [5/8]

CIRef< IDMSearchQuery > CFeatureSearchForm::ConstructQuery ( )

virtual

Reimplemented from CSearchFormBase.

Definition at line 337 of file feature_search_tool.cpp.

References _ASSERT, CSearchToolBase::eExactMatch, CSearchToolBase::eRegexp, CSearchToolBase::eWildcard, ISeqLocSearchContext::GetAnnotNames(), IDataMiningContext::GetDMContextName(), ISeqLocSearchContext::GetSearchLoc(), ISeqLocSearchContext::GetSearchScope(), i, CRef< C, Locker >::IsNull(), CSearchQueryBase::SScopedLoc::m_AnnotNames, CSearchFormBase::m_bRange, CSearchQueryBase::SScopedLoc::m_ContextName, CSearchFormBase::m_Contexts, CFeatureSearchForm::m_DbCombo, CSearchFormBase::m_FeatTypesSet, CSearchQueryBase::SScopedLoc::m_Loc, CFeatureSearchForm::m_PatternType, CSearchQueryBase::SScopedLoc::m_Scope, CFeatureSearchForm::m_SeqLocContexts, CSearchFormBase::m_Text, CFeatureSearchForm::m_TypeCombo, CSeq_loc::SetWhole(), ToStdString(), and NStr::TruncateSpacesInPlace().

ConstructQuery() [6/8]

CIRef< IDMSearchQuery > COrfSearchForm::ConstructQuery ( )

virtual

Reimplemented from CSearchFormBase.

Definition at line 487 of file orf_search_tool.cpp.

References _ASSERT, IDataMiningContext::GetDMContextName(), CSeq_loc::GetId(), CSeq_loc::GetLabel(), ISeqLocSearchContext::GetMultiple(), ISeqLocSearchContext::GetSearchLoc(), ISeqLocSearchContext::GetSearchScope(), i, CRef< C, Locker >::IsNull(), ITERATE, label, COrfSearchForm::m_BasepairsText, CSearchFormBase::m_bRange, CSearchQueryBase::SScopedLoc::m_ContextName, CSearchFormBase::m_Contexts, COrfSearchForm::m_DbCombo, COrfSearchForm::m_GencodeCombo, CSearchQueryBase::SScopedLoc::m_Loc, CSearchQueryBase::SScopedLoc::m_Scope, COrfSearchForm::m_SeqLocContexts, COrfSearchForm::m_StartorfCombo, CRef< C, Locker >::Reset(), CSeq_loc::SetWhole(), and ToStdString().

ConstructQuery() [7/8]

CIRef< IDMSearchQuery > CSequenceSearchForm::ConstructQuery ( )

virtual

Reimplemented from CSearchFormBase.

Definition at line 345 of file sequence_search_tool.cpp.

References _ASSERT, CSearchToolBase::eExactMatch, CSearchToolBase::eNamed, CSearchToolBase::eRegexp, CSearchToolBase::eWildcard, CPacked_seqint_Base::Get(), IDataMiningContext::GetDMContextName(), CSeq_loc::GetId(), CSeq_loc_Base::GetPacked_int(), ISeqLocSearchContext::GetSearchLoc(), ISeqLocSearchContext::GetSearchScope(), i, CRef< C, Locker >::IsNull(), CSeq_loc_Base::IsPacked_int(), ITERATE, CSearchFormBase::m_bRange, CSearchQueryBase::SScopedLoc::m_ContextName, CSearchFormBase::m_Contexts, CSequenceSearchForm::m_DbCombo, CSearchQueryBase::SScopedLoc::m_Loc, CSequenceSearchForm::m_PatternCombo, CSequenceSearchForm::m_PatternType, CSearchQueryBase::SScopedLoc::m_Scope, CSequenceSearchForm::m_SeqLocContexts, CSearchFormBase::m_Text, CSequenceSearchForm::m_TypeCombo, and ToStdString().

ConstructQuery() [8/8]

CIRef< IDMSearchQuery > CVcfSearchForm::ConstructQuery ( )

virtual

Reimplemented from CSearchFormBase.

Definition at line 221 of file vcf_search_tool.cpp.

References i, CSearchFormBase::m_Contexts, CVcfSearchForm::m_DbCombo, CSearchFormBase::m_Text, and ToStdString().

Copy() [1/4]

void CCleanupParams::Copy

(

const CCleanupParams &

data

)

Copy function for CCleanupParams.

Copy function for CCleanupParams

Definition at line 94 of file cleanup_params.cpp.

References data, CCleanupParams::m_CleanupMode, and CCleanupParams::m_Objects.

Referenced by CCleanupParams::CCleanupParams(), and CCleanupParams::operator=().

Copy() [2/4]

void CFastaLoadParams::Copy

(

const CFastaLoadParams &

data

)

Copy function for CFastaLoadParams.

Copy function for CFastaLoadParams

Definition at line 101 of file fasta_load_params.cpp.

References data, CFastaLoadParams::m_ForceLocalIDs, CFastaLoadParams::m_IgnoreGaps, CFastaLoadParams::m_LowercaseOption, CFastaLoadParams::m_MakeDelta, CFastaLoadParams::m_NoSplit, CFastaLoadParams::m_ReadFirst, CFastaLoadParams::m_SeqType, and CFastaLoadParams::m_SkipInvalid.

Referenced by CFastaLoadParams::CFastaLoadParams(), and CFastaLoadParams::operator=().

Copy() [3/4]

void CGffLoadParams::Copy

(

const CGffLoadParams &

data

)

Copy function for CGffLoadParams.

Copy function for CGffLoadParams

Definition at line 99 of file gff_load_params.cpp.

References data, CGffLoadParams::m_FileFormat, CGffLoadParams::m_MapAssembly, CGffLoadParams::m_NameFeatSet, and CGffLoadParams::m_ParseSeqIds.

Referenced by CGffLoadParams::CGffLoadParams(), and CGffLoadParams::operator=().

Copy() [4/4]

void CSrcEditParams::Copy

(

const CSrcEditParams &

data

)

Copy function for CSrcEditParams.

Copy function for CSrcEditParams

Definition at line 93 of file srcedit_params.cpp.

References data, and CSrcEditParams::m_Objects.

Referenced by CSrcEditParams::CSrcEditParams(), and CSrcEditParams::operator=().

COrfSearchForm()

COrfSearchForm::COrfSearchForm

(

COrfSearchTool &

tool

)

COrfSearchForm.

Definition at line 265 of file orf_search_tool.cpp.

COrfSearchJob()

COrfSearchJob::COrfSearchJob	(	COrfSearchQuery &	query,
		const COrfSearchForm::TKozakList &	kozakList
	)

COrfSearchJob.

Definition at line 572 of file orf_search_tool.cpp.

COrfSearchQuery()

COrfSearchQuery::COrfSearchQuery	(	TScopedLocs &	locs,
		const string &	gc,
		const string &	so,
		const string &	mp
	)

COrfSearchQuery.

Definition at line 238 of file orf_search_tool.cpp.

COrfSearchTool()

COrfSearchTool::COrfSearchTool

(

)

COrfSearchTool.

Definition at line 144 of file orf_search_tool.cpp.

References CSeqFeatData::eSubtype_cdregion, CSeqFeatData::eSubtype_mat_peptide, CSeqFeatData::eSubtype_mat_peptide_aa, CSeqFeatData::eSubtype_preprotein, CSeqFeatData::eSubtype_prot, CSeqFeatData::eSubtype_sig_peptide, CSeqFeatData::eSubtype_sig_peptide_aa, CSeqFeatData::eSubtype_transit_peptide, IDMSearchTool::TFilters::filters, CSearchToolBase::m_Conversions, CSearchToolBase::m_Filters, IDMSearchTool::TConversions::options, IDMSearchTool::TConversions::selected, and IDMSearchTool::TFilters::selected.

Referenced by COrfSearchTool::Clone().

CPage() [1/7]

CAgpLoader::CPage::CPage ( CAgpLoader &  manager )

inline

Definition at line 136 of file agp_loader.hpp.

CPage() [2/7]

CBedLoadManager::CPage::CPage ( CBedLoadManager &  manager )

inline

Definition at line 136 of file bed_load_manager.hpp.

CPage() [3/7]

CFASTAFormatLoadManager::CPage::CPage ( CFASTAFormatLoadManager &  manager )

inline

Definition at line 135 of file fasta_format_load_manager.hpp.

CPage() [4/7]

CGBFlatFileLoadManager::CPage::CPage ( CGBFlatFileLoadManager &  mgr )

inline

Definition at line 130 of file gb_flatfile_load_manager.hpp.

CPage() [5/7]

CGffLoadManager::CPage::CPage ( CGffLoadManager &  manager )

inline

Definition at line 139 of file gff_load_manager.hpp.

CPage() [6/7]

CVCFLoaderManager::CPage::CPage ( CVCFLoaderManager &  manager )

inline

Definition at line 134 of file vcf_load_manager.hpp.

CPage() [7/7]

CWigLoadManager::CPage::CPage ( CWigLoadManager &  manager )

inline

Definition at line 136 of file wig_load_manager.hpp.

CPhyLoader()

CPhyLoader::CPhyLoader

(

)

CPhyLoader.

Definition at line 45 of file phy_loader.cpp.

References CPhyLoader::m_Descr, and CUIObject::SetLogEvent().

CPhyObjectLoader()

CPhyObjectLoader::CPhyObjectLoader

(

const vector< wxString > &

filenames

)

Definition at line 51 of file phy_object_loader.cpp.

CPslObjectLoader()

CPslObjectLoader::CPslObjectLoader	(	const CPslLoadParams &	params,
		const vector< wxString > &	filenames
	)

Definition at line 51 of file psl_object_loader.cpp.

Create() [1/13]

void CSNPSearchForm::Create ( void  )

virtual

Reimplemented from IDMSearchForm.

Definition at line 165 of file snp_search_tool.cpp.

Create() [2/13]

void CComponentSearchForm::Create ( void  )

virtual

Reimplemented from IDMSearchForm.

Definition at line 149 of file component_search_tool.cpp.

References CComponentSearchForm::x_CreateWidgets().

Create() [3/13]

void CCpgSearchForm::Create ( void  )

virtual

Reimplemented from IDMSearchForm.

Definition at line 308 of file cpg_search_tool.cpp.

Create() [4/13]

void CEntrezSearchForm::Create ( void  )

virtual

Reimplemented from IDMSearchForm.

Definition at line 163 of file entrez_search_tool.cpp.

Create() [5/13]

void CFeatureSearchForm::Create ( void  )

virtual

Reimplemented from IDMSearchForm.

Definition at line 183 of file feature_search_tool.cpp.

References CFeatureSearchForm::x_CreateWidgets().

Create() [6/13]

void COrfSearchForm::Create ( void  )

virtual

Reimplemented from IDMSearchForm.

Definition at line 278 of file orf_search_tool.cpp.

Create() [7/13]

void CSequenceSearchForm::Create ( void  )

virtual

Reimplemented from IDMSearchForm.

Definition at line 222 of file sequence_search_tool.cpp.

Create() [8/13]

void CVcfSearchForm::Create ( void  )

virtual

Reimplemented from IDMSearchForm.

Definition at line 155 of file vcf_search_tool.cpp.

References CVcfSearchForm::x_CreateWidgets().

Create() [9/13]

bool CCleanupPanel::Create	(	wxWindow *	parent,
		wxWindowID	id = ID_CCLEANUPPANEL,
		const wxPoint &	pos = wxDefaultPosition,
		const wxSize &	size = wxSize(400, 300),
		long	style = wxTAB_TRAVERSAL
	)

Creation.

CCleanupPanel creator

Definition at line 86 of file cleanup_panel.cpp.

References CCleanupPanel::CreateControls(), and ncbi::grid::netcache::search::fields::size.

Referenced by CCleanupPanel::CCleanupPanel(), and CCleanupTool::x_CreateParamsPanelIfNeeded().

Create() [10/13]

bool CFASTAFormatParamsPanel::Create	(	wxWindow *	parent,
		wxWindowID	id = ID_CFASTAFORMATPARAMSPANEL,
		const wxPoint &	pos = wxDefaultPosition,
		const wxSize &	size = wxSize(400, 300),
		long	style = wxTAB_TRAVERSAL
	)

Definition at line 75 of file fasta_format_params_panel.cpp.

References CFASTAFormatParamsPanel::CreateControls(), and ncbi::grid::netcache::search::fields::size.

Referenced by CFASTAFormatParamsPanel::CFASTAFormatParamsPanel().

Create() [11/13]

bool CGenBankLoadOptionPanel::Create	(	wxWindow *	parent,
		wxWindowID	id = ID_CGENBANKLOADOPTIONPANEL,
		const wxPoint &	pos = wxDefaultPosition,
		const wxSize &	size = wxSize(266, 184),
		long	style = wxTAB_TRAVERSAL
	)

Definition at line 89 of file gb_load_option_panel.cpp.

References CGenBankLoadOptionPanel::CreateControls(), and ncbi::grid::netcache::search::fields::size.

Referenced by CGenBankLoadOptionPanel::CGenBankLoadOptionPanel().

Create() [12/13]

bool CGffParamsPanel::Create	(	wxWindow *	parent,
		wxWindowID	id = ID_CGFFPARAMSPANEL,
		const wxPoint &	pos = wxDefaultPosition,
		const wxSize &	size = wxSize(400, 500),
		long	style = wxTAB_TRAVERSAL
	)

Creation.

CGFFParamsPanel creator

Definition at line 101 of file gff_params_panel.cpp.

References CGffParamsPanel::CreateControls(), and ncbi::grid::netcache::search::fields::size.

Referenced by CGffParamsPanel::CGffParamsPanel().

Create() [13/13]

bool CResolveIdDlg::Create	(	wxWindow *	parent,
		wxWindowID	id = ID_CRESOLVEIDDLG,
		const wxString &	caption = _("Check Sequence Identifiers"),
		const wxPoint &	pos = wxDefaultPosition,
		const wxSize &	size = wxSize(400, 300),
		long	style = wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL
	)

Creation.

CResolveIdDlg creator

Definition at line 290 of file resolve_id_dlg.cpp.

References CResolveIdDlg::CreateControls(), and ncbi::grid::netcache::search::fields::size.

Referenced by CResolveIdDlg::CResolveIdDlg().

CreateControls() [1/5]

void CCleanupPanel::CreateControls

(

)

Creates the controls and sizers.

Control creation for CCleanupPanel

Definition at line 129 of file cleanup_panel.cpp.

References _, CCleanupPanel::GetData(), CCleanupPanel::ID_LISTCTRL1, CCleanupPanel::ID_RADIOBOX1, CCleanupPanel::m_ObjectList, and wxID_ANY.

Referenced by CCleanupPanel::Create().

CreateControls() [2/5]

void CFASTAFormatParamsPanel::CreateControls

(

)

Definition at line 105 of file fasta_format_params_panel.cpp.

References _, CFASTAFormatParamsPanel::GetData(), CFASTAFormatParamsPanel::ID_CHECKBOX, CFASTAFormatParamsPanel::ID_CHECKBOX1, CFASTAFormatParamsPanel::ID_CHECKBOX2, CFASTAFormatParamsPanel::ID_CHECKBOX4, CFASTAFormatParamsPanel::ID_CHECKBOX5, CFASTAFormatParamsPanel::ID_CHECKBOX8, CFASTAFormatParamsPanel::ID_LOWERCASE, and CFASTAFormatParamsPanel::ID_SEQ_TYPE.

Referenced by CFASTAFormatParamsPanel::Create().

CreateControls() [3/5]

void CGenBankLoadOptionPanel::CreateControls

(

)

Definition at line 123 of file gb_load_option_panel.cpp.

References _, CGenBankLoadOptionPanel::ID_ACC_INPUT, CGenBankLoadOptionPanel::ID_HTMLWINDOW2, CGenBankLoadOptionPanel::m_AccInput, CGenBankLoadOptionPanel::m_DefStyle, CGenBankLoadOptionPanel::m_ErrStyle, and CGenBankLoadOptionPanel::m_MRUWindow.

Referenced by CGenBankLoadOptionPanel::Create().

CreateControls() [4/5]

void CGffParamsPanel::CreateControls

(

)

Creates the controls and sizers.

Control creation for CGFFParamsPanel

Definition at line 145 of file gff_params_panel.cpp.

References _, CGffParamsPanel::GetData(), CGffParamsPanel::ID_CHOICE2, CGffParamsPanel::ID_PANEL, CGffParamsPanel::ID_PANEL7, CGffParamsPanel::ID_SEQ_ID_LOCAL, CGffParamsPanel::ID_SEQ_ID_NORMAL, CGffParamsPanel::ID_TEXTCTRL1, CGffParamsPanel::IDSEQ_ID_NUMERIC, CGffParamsPanel::m_AssemblyPanel, CGffParamsPanel::ShowToolTips(), and wxID_ANY.

Referenced by CGffParamsPanel::Create().

CreateControls() [5/5]

void CResolveIdDlg::CreateControls

(

)

Creates the controls and sizers.

Control creation for CResolveIdDlg

Definition at line 334 of file resolve_id_dlg.cpp.

References _, CResolveIdDlg::ID_GRID, CResolveIdDlg::m_Grid, and ncbi::grid::netcache::search::fields::size.

Referenced by CResolveIdDlg::Create().

CreateDataSource()

IUIDataSource * CGenBankUIDataSourceType::CreateDataSource ( )

virtual

factory method; create an Data Source instance

Implements IUIDataSourceType.

Definition at line 423 of file gb_ui_data_source.cpp.

CreateEvtHandler()

wxEvtHandler * CGenBankUIDataSource::CreateEvtHandler ( )

virtual

Reimplemented from IUIDataSource.

Definition at line 396 of file gb_ui_data_source.cpp.

References CGenBankUIDataSource::m_SrvLocator.

CreateInstance() [1/5]

IView * CSeqTextViewFactory::CreateInstance ( ) const

virtual

creates a view instance

Implements IViewFactory.

Definition at line 283 of file seq_text_view.cpp.

CreateInstance() [2/5]

IView * CFeatTableViewFactory::CreateInstance ( ) const

virtual

creates a view instance

Implements IViewFactory.

Definition at line 593 of file view_feattable.cpp.

CreateInstance() [3/5]

IView * CViewGraphicFactory::CreateInstance ( ) const

virtual

creates a view instance

Implements IViewFactory.

Definition at line 732 of file view_graphic.cpp.

CreateInstance() [4/5]

IView * CSequinDesktopViewFactory::CreateInstance ( ) const

virtual

creates a view instance

Implements IViewFactory.

Definition at line 397 of file sequin_desktop_view.cpp.

CreateInstance() [5/5]

IView * CTextViewFactory::CreateInstance ( ) const

virtual

creates a view instance

Implements IViewFactory.

Definition at line 420 of file text_view.cpp.

CreateInstanceByFingerprint() [1/5]

IView * CSeqTextViewFactory::CreateInstanceByFingerprint ( const TFingerprint &  fingerprint ) const

virtual

if fingerprint is recognized - creates and returns a new instance

Implements IViewFactory.

Definition at line 289 of file seq_text_view.cpp.

References NULL.

CreateInstanceByFingerprint() [2/5]

IView * CFeatTableViewFactory::CreateInstanceByFingerprint ( const TFingerprint &  fingerprint ) const

virtual

if fingerprint is recognized - creates and returns a new instance

Implements IViewFactory.

Definition at line 599 of file view_feattable.cpp.

References NULL.

CreateInstanceByFingerprint() [3/5]

IView * CViewGraphicFactory::CreateInstanceByFingerprint ( const TFingerprint &  fingerprint ) const

virtual

if fingerprint is recognized - creates and returns a new instance

Implements IViewFactory.

Definition at line 738 of file view_graphic.cpp.

References NULL.

CreateInstanceByFingerprint() [4/5]

IView * CSequinDesktopViewFactory::CreateInstanceByFingerprint ( const TFingerprint &  fingerprint ) const

virtual

if fingerprint is recognized - creates and returns a new instance

Implements IViewFactory.

Definition at line 403 of file sequin_desktop_view.cpp.

References NULL.

CreateInstanceByFingerprint() [5/5]

IView * CTextViewFactory::CreateInstanceByFingerprint ( const TFingerprint &  fingerprint ) const

virtual

if fingerprint is recognized - creates and returns a new instance

Implements IViewFactory.

Definition at line 426 of file text_view.cpp.

References NULL.

CreateSearchForm() [1/8]

CIRef< IDMSearchForm > CSNPSearchTool::CreateSearchForm ( )

virtual

factory method for creating a form representing the tool

Implements CSearchToolBase.

Definition at line 114 of file snp_search_tool.cpp.

CreateSearchForm() [2/8]

CIRef< IDMSearchForm > CComponentSearchTool::CreateSearchForm ( )

virtual

factory method for creating a form representing the tool

Implements CSearchToolBase.

Definition at line 92 of file component_search_tool.cpp.

CreateSearchForm() [3/8]

CIRef< IDMSearchForm > CCpgSearchTool::CreateSearchForm ( )

virtual

factory method for creating a form representing the tool

Implements CSearchToolBase.

Definition at line 213 of file cpg_search_tool.cpp.

CreateSearchForm() [4/8]

CIRef< IDMSearchForm > CEntrezSearchTool::CreateSearchForm ( )

virtual

factory method for creating a form representing the tool

Implements CSearchToolBase.

Definition at line 109 of file entrez_search_tool.cpp.

CreateSearchForm() [5/8]

CIRef< IDMSearchForm > CFeatureSearchTool::CreateSearchForm ( )

virtual

factory method for creating a form representing the tool

Implements CSearchToolBase.

Definition at line 97 of file feature_search_tool.cpp.

CreateSearchForm() [6/8]

CIRef< IDMSearchForm > COrfSearchTool::CreateSearchForm ( )

virtual

factory method for creating a form representing the tool

Implements CSearchToolBase.

Definition at line 191 of file orf_search_tool.cpp.

CreateSearchForm() [7/8]

CIRef< IDMSearchForm > CSequenceSearchTool::CreateSearchForm ( )

virtual

factory method for creating a form representing the tool

Implements CSearchToolBase.

Definition at line 138 of file sequence_search_tool.cpp.

CreateSearchForm() [8/8]

CIRef< IDMSearchForm > CVcfSearchTool::CreateSearchForm ( )

virtual

factory method for creating a form representing the tool

Implements CSearchToolBase.

Definition at line 93 of file vcf_search_tool.cpp.

CreateViewWindow() [1/5]

void CSeqTextView::CreateViewWindow ( wxWindow *  parent )

virtual

create Window corresponding to the view

Implements CProjectViewBase.

Definition at line 141 of file seq_text_view.cpp.

References _ASSERT, CEventHandler::AddListener(), CEventHandler::ePool_Child, CEventHandler::ePool_Parent, CSeqTextPanel::GetWidget(), and CSeqTextView::m_Window.

CreateViewWindow() [2/5]

void CFeatTableView::CreateViewWindow ( wxWindow *  parent )

virtual

create Window corresponding to the view

Implements CProjectViewBase.

Definition at line 216 of file view_feattable.cpp.

References _ASSERT, CEventHandler::AddListener(), CEventHandler::ePool_Child, CEventHandler::ePool_Parent, CFeatTableView::m_DataSource, CFeatTableView::m_FTblWidget, CFeatTableView::m_Panel, CFeatTableView::m_StatusBar, and CFeatTableWidget::SetDataSource().

CreateViewWindow() [3/5]

void CViewGraphic::CreateViewWindow ( wxWindow *  parent )

virtual

create Window corresponding to the view

Implements CProjectViewBase.

Definition at line 109 of file view_graphic.cpp.

References _ASSERT, CEventHandler::AddListener(), CEventHandler::ePool_Child, CEventHandler::ePool_Parent, CGraphicPanel::GetWidget(), and CViewGraphic::m_GraphicPanel.

CreateViewWindow() [4/5]

void CSequinDesktopView::CreateViewWindow ( wxWindow *  parent )

virtual

create Window corresponding to the view

Implements CProjectViewBase.

Definition at line 176 of file sequin_desktop_view.cpp.

References _ASSERT, CEventHandler::AddListener(), CEventHandler::ePool_Parent, CSeqDesktopPanel::GetWidget(), CSequinDesktopView::m_Window, CDesktopCanvas::SetHost(), CSeqDesktopPanel::SetHost(), and wxID_ANY.

CreateViewWindow() [5/5]

void CTextView::CreateViewWindow ( wxWindow *  parent )

virtual

create Window corresponding to the view

Implements CProjectViewBase.

Definition at line 215 of file text_view.cpp.

References _ASSERT, CTextPanel::GetWidget(), CTextView::m_Window, CTextPanel::SetHost(), CTextItemPanel::SetHost(), and wxID_ANY.

CResolveIdDlg() [1/2]

CResolveIdDlg::CResolveIdDlg

(

)

Constructors.

CResolveIdDlg constructors

Definition at line 274 of file resolve_id_dlg.cpp.

References CResolveIdDlg::Init().

CResolveIdDlg() [2/2]

CResolveIdDlg::CResolveIdDlg	(	wxWindow *	parent,
		wxWindowID	id = ID_CRESOLVEIDDLG,
		const wxString &	caption = _("Check Sequence Identifiers"),
		const wxPoint &	pos = wxDefaultPosition,
		const wxSize &	size = wxSize(400, 300),
		long	style = wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL
	)

Definition at line 279 of file resolve_id_dlg.cpp.

References CResolveIdDlg::Create(), CResolveIdDlg::Init(), and ncbi::grid::netcache::search::fields::size.

CRMLoader()

CRMLoader::CRMLoader

(

)

CRMLoader.

Definition at line 46 of file rm_load_manager.cpp.

References CRMLoader::m_Descr, and CUIObject::SetLogEvent().

CSeqTextView()

CSeqTextView::CSeqTextView

(

)

Definition at line 66 of file seq_text_view.cpp.

CSequenceSearchForm()

CSequenceSearchForm::CSequenceSearchForm

(

CSequenceSearchTool &

tool

)

Definition at line 211 of file sequence_search_tool.cpp.

CSequenceSearchJob()

CSequenceSearchJob::CSequenceSearchJob

(

CSequenceSearchQuery &

query

)

CSequenceSearchJob.

Definition at line 519 of file sequence_search_tool.cpp.

References CLabel::eDefault, CLabel::GetLabel(), CSequenceSearchQuery::GetPattern(), CSearchQueryBase::GetScopedLocs(), CSearchJobBase::m_Descr, CSequenceSearchJob::m_Query, and NON_CONST_ITERATE.

CSequenceSearchQuery()

CSequenceSearchQuery::CSequenceSearchQuery	(	TScopedLocs &	locs,
		const string &	pattern,
		TPatternType	pt_type,
		const string &	file
	)

CSequenceSearchQuery.

Definition at line 182 of file sequence_search_tool.cpp.

CSequenceSearchTool()

CSequenceSearchTool::CSequenceSearchTool

(

)

CSequenceSearchTool.

Definition at line 97 of file sequence_search_tool.cpp.

References CSeqFeatData::eSubtype_misc_binding, CSeqFeatData::eSubtype_polyA_site, CSeqFeatData::eSubtype_primer_bind, CSeqFeatData::eSubtype_protein_bind, CSeqFeatData::eSubtype_region, CSeqFeatData::eSubtype_rsite, CSeqFeatData::eSubtype_site, CSeqFeatData::eSubtype_site_ref, CSeqFeatData::eSubtype_txinit, IDMSearchTool::TFilters::filters, CSearchToolBase::m_Conversions, CSearchToolBase::m_Filters, IDMSearchTool::TConversions::options, and IDMSearchTool::TConversions::selected.

Referenced by CSequenceSearchTool::Clone().

CSequinDesktopView()

CSequinDesktopView::CSequinDesktopView

(

)

Definition at line 83 of file sequin_desktop_view.cpp.

CSNPSearchForm() [1/2]

CSNPSearchForm::CSNPSearchForm ( )

inline

Definition at line 107 of file snp_search_tool.hpp.

CSNPSearchForm() [2/2]

CSNPSearchForm::CSNPSearchForm

(

CSNPSearchTool &

tool

)

CSNPSearchForm.

Definition at line 159 of file snp_search_tool.cpp.

CSNPSearchJob()

CSNPSearchJob::CSNPSearchJob

(

CSNPSearchQuery &

query

)

CSNPSearchJob.

Definition at line 223 of file snp_search_tool.cpp.

References CSNPSearchQuery::GetTerms(), CSearchJobBase::m_Descr, and CSNPSearchJob::m_Query.

CSNPSearchQuery()

CSNPSearchQuery::CSNPSearchQuery

(

const string &

terms

)

CSNPSearchTool.

Definition at line 150 of file snp_search_tool.cpp.

CSNPSearchTool()

CSNPSearchTool::CSNPSearchTool

(

)

IDMSearchTool.

Definition at line 90 of file snp_search_tool.cpp.

Referenced by CSNPSearchTool::Clone().

CSrcEditParams() [1/2]

CSrcEditParams::CSrcEditParams

(

)

Default constructor for CSrcEditParams.

CSrcEditParams type definition

Default constructor for CSrcEditParams

Definition at line 46 of file srcedit_params.cpp.

References CSrcEditParams::Init().

CSrcEditParams() [2/2]

CSrcEditParams::CSrcEditParams

(

const CSrcEditParams &

data

)

Copy constructor for CSrcEditParams.

Copy constructor for CSrcEditParams

Definition at line 55 of file srcedit_params.cpp.

References CSrcEditParams::Copy(), data, and CSrcEditParams::Init().

CSrcEditTool()

CSrcEditTool::CSrcEditTool

(

)

CSrcEditTool.

Definition at line 63 of file srcedit_tool.cpp.

References CAlgoToolManagerBase::m_Descriptor, and CUIObject::SetLogEvent().

CTextView()

CTextView::CTextView

(

)

Definition at line 74 of file text_view.cpp.

CVCFLoaderManager()

CVCFLoaderManager::CVCFLoaderManager

(

)

CVCFLoaderManager.

Definition at line 51 of file vcf_load_manager.cpp.

References CVCFLoaderManager::m_Descr, and CUIObject::SetLogEvent().

CVcfObjectLoader()

CVcfObjectLoader::CVcfObjectLoader	(	const CBedLoadParams &	params,
		const vector< wxString > &	filenames
	)

Definition at line 51 of file vcf_object_loader.cpp.

CVcfSearchForm()

CVcfSearchForm::CVcfSearchForm

(

CVcfSearchTool &

tool

)

CVcfSearchForm.

Definition at line 149 of file vcf_search_tool.cpp.

CVcfSearchJob()

CVcfSearchJob::CVcfSearchJob

(

CVcfSearchQuery &

query

)

CVcfSearchJob.

Definition at line 244 of file vcf_search_tool.cpp.

References CVcfSearchQuery::GetIds(), CSearchJobBase::m_Descr, and CVcfSearchJob::m_Query.

CVcfSearchQuery()

CVcfSearchQuery::CVcfSearchQuery	(	vector< ISeqLocSearchContext * >	VcfContexts,
		const string &	ids
	)

CVcfSearchQuery.

Definition at line 139 of file vcf_search_tool.cpp.

CVcfSearchTool()

CVcfSearchTool::CVcfSearchTool

(

)

IDMSearchTool.

Definition at line 69 of file vcf_search_tool.cpp.

Referenced by CVcfSearchTool::Clone().

CViewGraphic()

CViewGraphic::CViewGraphic

(

)

Definition at line 93 of file view_graphic.cpp.

CWigLoadManager()

CWigLoadManager::CWigLoadManager

(

)

CWigLoadManager.

Definition at line 50 of file wig_load_manager.cpp.

References CWigLoadManager::m_Descr, and CUIObject::SetLogEvent().

CWigObjectLoader()

CWigObjectLoader::CWigObjectLoader	(	const CWigLoadParams &	params,
		const vector< wxString > &	filenames
	)

Definition at line 74 of file wig_object_loader.cpp.

DECLARE_EVENT_MAP() [1/3]

CFeatTableView::DECLARE_EVENT_MAP ( )

private

DECLARE_EVENT_MAP() [2/3]

CViewGraphic::DECLARE_EVENT_MAP ( )

private

DECLARE_EVENT_MAP() [3/3]

CSequinDesktopView::DECLARE_EVENT_MAP ( )

private

DestroyViewWindow() [1/5]

void CSeqTextView::DestroyViewWindow ( )

virtual

destroy Window corresponding to the view

Implements CProjectViewBase.

Definition at line 153 of file seq_text_view.cpp.

References CSeqTextView::m_Window, and NULL.

DestroyViewWindow() [2/5]

void CFeatTableView::DestroyViewWindow ( )

virtual

destroy Window corresponding to the view

Implements CProjectViewBase.

Definition at line 245 of file view_feattable.cpp.

References CFeatTableView::GetWindow(), CFeatTableView::m_DataSource, CFeatTableView::m_FTblWidget, CFeatTableView::m_Panel, CFeatTableView::m_StatusBar, NULL, CEventHandler::RemoveListener(), and CwxTableListCtrl::RemoveModel().

DestroyViewWindow() [3/5]

void CViewGraphic::DestroyViewWindow ( )

virtual

destroy Window corresponding to the view

Implements CProjectViewBase.

Definition at line 121 of file view_graphic.cpp.

References CViewGraphic::m_GraphicPanel, and NULL.

DestroyViewWindow() [4/5]

void CSequinDesktopView::DestroyViewWindow ( )

virtual

destroy Window corresponding to the view

Implements CProjectViewBase.

Definition at line 188 of file sequin_desktop_view.cpp.

References CSeqDesktopPanel::GetWidget(), CSequinDesktopView::m_Window, CDesktopCanvas::SetHost(), and CSeqDesktopPanel::SetHost().

DestroyViewWindow() [5/5]

void CTextView::DestroyViewWindow ( )

virtual

destroy Window corresponding to the view

Implements CProjectViewBase.

Definition at line 225 of file text_view.cpp.

References CTextPanel::GetWidget(), CTextView::m_Window, CTextPanel::SetHost(), and CTextItemPanel::SetHost().

DoTransition() [1/15]

bool CCleanupTool::DoTransition ( EAction  action )

virtual

Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false.

Typically this function would take user input from the current panel, validate the input and go to the next state creating new UI panel if needed.

Reimplemented from CAlgoToolManagerBase.

Definition at line 96 of file cleanup_tool.cpp.

References CAlgoToolManagerBase::DoTransition(), CAlgoToolManagerBase::eCompleted, IUIToolManager::eNext, CAlgoToolManagerBase::eParams, CAlgoToolManagerBase::m_State, and CCleanupTool::x_GetParamsPanel().

DoTransition() [2/15]

bool CGBFlatFileLoadManager::DoTransition ( EAction  action )

virtual

Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false.

Typically this function would take user input from the current panel, validate the input and go to the next state creating new UI panel if needed.

Implements IUIToolManager.

Definition at line 158 of file gb_flatfile_load_manager.cpp.

References _ASSERT, IUIToolManager::eBack, CGBFlatFileLoadManager::eCompleted, IUIToolManager::eNext, CGBFlatFileLoadManager::eParams, CGBFlatFileParamsPanel::GetData(), CGBFlatFileLoadManager::m_Params, CGBFlatFileLoadManager::m_ParamsPanel, and CGBFlatFileLoadManager::m_State.

DoTransition() [3/15]

bool CGenBankUILoadManager::DoTransition ( EAction  action )

virtual

Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false.

Typically this function would take user input from the current panel, validate the input and go to the next state creating new UI panel if needed.

Implements IUIToolManager.

Definition at line 548 of file gb_ui_data_source.cpp.

References _ASSERT, IUIToolManager::eBack, CGenBankUILoadManager::eCompleted, IUIToolManager::eNext, CGenBankUILoadManager::eSelectAcc, CGenBankUILoadManager::eSelectProject, CGenBankLoadOptionPanel::IsInputValid(), CGenBankUILoadManager::m_OptionPanel, CGenBankUILoadManager::m_ProjectSelPanel, CGenBankUILoadManager::m_State, and CProjectSelectorPanel::TransferDataFromWindow().

DoTransition() [4/15]

bool CMergeTool::DoTransition ( EAction  action )

virtual

Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false.

Typically this function would take user input from the current panel, validate the input and go to the next state creating new UI panel if needed.

Reimplemented from CAlgoToolManagerBase.

Definition at line 96 of file merge_tool.cpp.

References CAlgoToolManagerBase::DoTransition(), CAlgoToolManagerBase::eCompleted, IUIToolManager::eNext, CAlgoToolManagerBase::eParams, CAlgoToolManagerBase::m_State, and CMergeTool::x_GetParamsPanel().

DoTransition() [5/15]

bool CSrcEditTool::DoTransition ( EAction  action )

virtual

Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false.

Typically this function would take user input from the current panel, validate the input and go to the next state creating new UI panel if needed.

Reimplemented from CAlgoToolManagerBase.

Definition at line 105 of file srcedit_tool.cpp.

References CAlgoToolManagerBase::DoTransition(), CAlgoToolManagerBase::eCompleted, IUIToolManager::eNext, CAlgoToolManagerBase::eParams, CAlgoToolManagerBase::m_State, and CSrcEditTool::x_GetParamsPanel().

DoTransition() [6/15]

bool CPhyLoader::DoTransition ( EAction  action )

virtual

Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false.

Typically this function would take user input from the current panel, validate the input and go to the next state creating new UI panel if needed.

Implements IUIToolManager.

Definition at line 142 of file phy_loader.cpp.

DoTransition() [7/15]

bool CRMLoader::DoTransition ( EAction  action )

virtual

Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false.

Typically this function would take user input from the current panel, validate the input and go to the next state creating new UI panel if needed.

Implements IUIToolManager.

Definition at line 128 of file rm_load_manager.cpp.

References _ASSERT.

DoTransition() [8/15]

bool C5ColLoadManager::DoTransition ( EAction  action )

virtual

Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false.

Typically this function would take user input from the current panel, validate the input and go to the next state creating new UI panel if needed.

Implements IUIToolManager.

Definition at line 122 of file 5col_load_manager.cpp.

References _ASSERT.

DoTransition() [9/15]

bool CAgpLoader::DoTransition ( EAction  action )

virtual

Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false.

Typically this function would take user input from the current panel, validate the input and go to the next state creating new UI panel if needed.

Implements IUIToolManager.

Definition at line 151 of file agp_loader.cpp.

References _ASSERT, IUIToolManager::eBack, CAgpLoader::eCompleted, IUIToolManager::eNext, CAgpLoader::eParams, CAgpLoadPage::GetData(), CAgpLoader::m_Params, CAgpLoader::m_ParamsPanel, CAgpLoader::m_State, and CAgpLoadPage::TransferDataFromWindow().

DoTransition() [10/15]

bool CBedLoadManager::DoTransition ( EAction  action )

virtual

Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false.

Typically this function would take user input from the current panel, validate the input and go to the next state creating new UI panel if needed.

Implements IUIToolManager.

Definition at line 152 of file bed_load_manager.cpp.

References _ASSERT, IUIToolManager::eBack, CBedLoadManager::eCompleted, IUIToolManager::eNext, CBedLoadManager::eParams, CBedParamsPanel::GetData(), CBedLoadManager::m_Params, CBedLoadManager::m_ParamsPanel, CBedLoadManager::m_State, and CBedParamsPanel::TransferDataFromWindow().

DoTransition() [11/15]

bool CColumnarVCFLoaderManager::DoTransition ( EAction  action )

virtual

Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false.

Typically this function would take user input from the current panel, validate the input and go to the next state creating new UI panel if needed.

Implements IUIToolManager.

Definition at line 270 of file columnar_vcf_load_manager.cpp.

References _ASSERT, CColumnarVCFLoaderManager::eAssembly, IUIToolManager::eBack, CColumnarVCFLoaderManager::eCompleted, CColumnarVCFLoaderManager::eInfoSelection, map_checker< Container >::empty(), IUIToolManager::eNext, CColumnarVCFLoaderManager::eRefSequences, CColumnarVCFLoaderManager::eSampleSelection, CMapAssemblyParams::GetAssemblyAcc(), CAssemblySelPanel::GetData(), CColumnarVCFReader::GetSamples(), CMapAssemblyParams::GetUseMapping(), CVcfAssemblySelectionPanel::IsInputValid(), CVcfAssemblySelectionPanel::m_AssemblyPanel, CColumnarVCFLoaderManager::m_AssemblyPanel, CColumnarVCFLoaderManager::m_AssmAcc, CColumnarVCFLoaderManager::m_GenCollAssm, CColumnarVCFLoaderManager::m_RefSeqIds, CColumnarVCFLoaderManager::m_State, CColumnarVCFLoaderManager::m_TopLevelSeqCount, CColumnarVCFLoaderManager::m_VCFreader, CRef< C, Locker >::Reset(), and CColumnarVCFLoaderManager::x_GetRefSeqs().

DoTransition() [12/15]

bool CFASTAFormatLoadManager::DoTransition ( EAction  action )

virtual

Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false.

Typically this function would take user input from the current panel, validate the input and go to the next state creating new UI panel if needed.

Implements IUIToolManager.

Definition at line 165 of file fasta_format_load_manager.cpp.

References _ASSERT, IUIToolManager::eBack, CFASTAFormatLoadManager::eCompleted, IUIToolManager::eNext, CFASTAFormatLoadManager::eParams, CFASTAFormatParamsPanel::GetData(), CFASTAFormatLoadManager::m_Params, CFASTAFormatLoadManager::m_ParamsPanel, CFASTAFormatLoadManager::m_State, and CFASTAFormatParamsPanel::TransferDataFromWindow().

DoTransition() [13/15]

bool CGffLoadManager::DoTransition ( EAction  action )

virtual

Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false.

Typically this function would take user input from the current panel, validate the input and go to the next state creating new UI panel if needed.

Implements IUIToolManager.

Definition at line 155 of file gff_load_manager.cpp.

References _ASSERT, IUIToolManager::eBack, CGffLoadManager::eCompleted, IUIToolManager::eNext, CGffLoadManager::eParams, CGffParamsPanel::GetData(), CGffLoadManager::m_Params, CGffLoadManager::m_ParamsPanel, CGffLoadManager::m_State, and CGffParamsPanel::TransferDataFromWindow().

DoTransition() [14/15]

bool CVCFLoaderManager::DoTransition ( EAction  action )

virtual

Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false.

Typically this function would take user input from the current panel, validate the input and go to the next state creating new UI panel if needed.

Implements IUIToolManager.

Definition at line 152 of file vcf_load_manager.cpp.

References _ASSERT, IUIToolManager::eBack, CVCFLoaderManager::eCompleted, IUIToolManager::eNext, CVCFLoaderManager::eParams, CBedParamsPanel::GetData(), CVCFLoaderManager::m_Params, CVCFLoaderManager::m_ParamsPanel, CVCFLoaderManager::m_State, and CBedParamsPanel::TransferDataFromWindow().

DoTransition() [15/15]

bool CWigLoadManager::DoTransition ( EAction  action )

virtual

Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false.

Typically this function would take user input from the current panel, validate the input and go to the next state creating new UI panel if needed.

Implements IUIToolManager.

Definition at line 153 of file wig_load_manager.cpp.

References _ASSERT, IUIToolManager::eBack, CWigLoadManager::eCompleted, IUIToolManager::eNext, CWigLoadManager::eParams, CWigParamsPanel::GetData(), CWigLoadManager::m_Params, CWigLoadManager::m_ParamsPanel, CWigLoadManager::m_State, and CWigParamsPanel::TransferDataFromWindow().

EditProperties()

void CGenBankUIDataSource::EditProperties ( )

virtual

Definition at line 379 of file gb_ui_data_source.cpp.

Execute() [1/12]

bool C5ColObjectLoader::Execute ( ICanceled &  canceled )

virtual

Implements IExecuteUnit.

Definition at line 71 of file 5col_object_loader.cpp.

References CStreamLineReader::AtEOF(), file, CException::GetMsg(), CRef< C, Locker >::GetPointer(), ICanceled::IsCanceled(), C5ColObjectLoader::m_FileNames, C5ColObjectLoader::m_Objects, NStr::NumericToString(), CFeature_table_reader::ReadSequinFeatureTable(), CRef< C, Locker >::Reset(), ToStdString(), CException::what(), and CReportLoaderErrors::x_UpdateHTMLResults().

Execute() [2/12]

bool CAgpObjectLoader::Execute ( ICanceled &  canceled )

virtual

Implements IExecuteUnit.

Definition at line 71 of file agp_object_loader.cpp.

References CScope::AddDefaults(), CLabel::eDefault, entries, CFastaReader::fDisableParseRange, CAgpToSeqEntry::fForceLocalId, file, CFastaReader::fParseGaps, CAgpToSeqEntry::fSetSeqGap, CAgpReader::GetErrorMessage(), CAgpLoadParams::GetFastaFile(), CObjectManager::GetInstance(), CLabel::GetLabel(), CException::GetMsg(), CAgpLoadParams::GetParseIDs(), CRef< C, Locker >::GetPointer(), CAgpToSeqEntry::GetResult(), CAgpLoadParams::GetSetGapInfo(), ICanceled::IsCanceled(), ITERATE, kEmptyStr, kMax_Int, label, CAgpObjectLoader::m_FileNames, CAgpObjectLoader::m_Objects, CAgpObjectLoader::m_Params, ILineReader::New(), NON_CONST_ITERATE, CFastaReader::ReadSet(), CAgpReader::ReadStream(), CReaderBase::SetCanceler(), CException::what(), and CReportLoaderErrors::x_UpdateHTMLResults().

Execute() [3/12]

bool CAssemblyObjectLoader::Execute ( ICanceled &  canceled )

virtual

Implements IExecuteUnit.

Definition at line 80 of file assembly_object_loader.cpp.

References CScope::AddDefaults(), CLabel::eDefault, CGC_AssemblySet_Base::eSet_type_assembly_set, CGC_AssemblySet_Base::eSet_type_full_assembly, CGC_Assembly::GetAccession(), CGC_Assemblies_Base::GetAssemblies(), CGC_Assembly_Base::GetAssembly_set(), CGencollSvc::GetAssmsInfo(), CGC_AssemblySet_Base::GetDesc(), CGC_AssemblyUnit_Base::GetDesc(), CGC_AssemblySet_Base::GetId(), CGC_AssemblyUnit_Base::GetId(), CObjectManager::GetInstance(), CLabel::GetLabel(), CException::GetMsg(), CGC_AssemblySet_Base::GetSet_type(), CGC_Assembly_Base::GetUnit(), CGC_Assembly_Base::IsAssembly_set(), ICanceled::IsCanceled(), CGC_Assembly::IsRefSeq(), CGC_Assembly_Base::IsUnit(), ITERATE, label, CAssemblyObjectLoader::m_Accessions, CAssemblyObjectLoader::m_Objects, CConstRef< C, Locker >::Reset(), CGC_Assemblies_Base::SetAssemblies(), CException::what(), wxT, and CReportLoaderErrors::x_UpdateHTMLResults().

Execute() [4/12]

bool CBedObjectLoader::Execute ( ICanceled &  canceled )

virtual

Implements IExecuteUnit.

Definition at line 74 of file bed_object_loader.cpp.

References CScope::AddDefaults(), CAnnot_descr_Base::CanGet(), data, CLabel::eDefault, file, CBedReader::fThreeFeatFormat, CAnnot_descr_Base::Get(), CMapAssemblyParams::GetAssemblyAcc(), CObjectManager::GetInstance(), CLabel::GetLabel(), CBedLoadParams::GetMapAssembly(), CException::GetMsg(), CBedLoadParams::GetNumErrors(), CMapAssemblyParams::GetUseMapping(), ICanceled::IsCanceled(), ITERATE, label, CBedObjectLoader::m_CurrentFile, CBedObjectLoader::m_FileNames, CBedObjectLoader::m_Objects, CBedObjectLoader::m_Params, NON_CONST_ITERATE, CReaderBase::ReadSeqAnnots(), CRef< C, Locker >::Reset(), CReaderBase::SetCanceler(), ToStdString(), CException::what(), CMappingObjectLoader::x_CreateMapper(), CReportLoaderErrors::x_UpdateHTMLResults(), and CMappingObjectLoader::x_UpdateMap().

Execute() [5/12]

bool CChainLoader::Execute ( ICanceled &  canceled )

virtual

Implements IExecuteUnit.

Definition at line 72 of file chain_loader.cpp.

References ICanceled::IsCanceled(), and CChainLoader::m_ExecuteUnits.

Execute() [6/12]

bool CGBFlatFileObjectLoader::Execute ( ICanceled &  canceled )

virtual

Implements IExecuteUnit.

Definition at line 102 of file gb_flatfile_object_loader.cpp.

References cleanup(), CCleanup::eClean_KeepTopSet, CCleanup::eClean_SyncGenCodes, CLabel::eDefault, Error(), file, CLabel::GetLabel(), CException::GetMsg(), CRef< C, Locker >::GetPointer(), CGBFlatFileObjectLoader::Init(), ICanceled::IsCanceled(), label, LOG_POST, CGBFlatFileObjectLoader::m_FileNames, CGBFlatFileObjectLoader::m_Objects, CGBFlatFileObjectLoader::m_Params, CGBFlatFileObjectLoader::m_Scope, CFlatFileParser::Parse(), CRef< C, Locker >::Reset(), s_GetParsingOption(), CSeq_entry_Base::SetSet(), CException::what(), and CReportLoaderErrorsEx::x_UpdateHTMLResults().

Execute() [7/12]

bool CGBObjectLoader::Execute ( ICanceled &  canceled )

virtual

Implements IExecuteUnit.

Definition at line 69 of file gb_object_loader.cpp.

References CScope::AddDefaults(), SAnnotSelector::AddNamedAnnots(), CLabel::eDefault, CNAUtils::EEDB_All, set< Key, Compare >::empty(), Error(), CNAUtils::GetAllGIs(), CSeqUtils::GetAnnotSelector(), CScope::GetBioseqHandle(), CBioseq_Handle::GetBioseqLength(), CSeq_interval_Base::GetFrom(), CSeq_loc::GetId(), CObjectManager::GetInstance(), CLabel::GetLabel(), CException::GetMsg(), CSeq_id::GetSeqIdString(), CSeq_interval_Base::GetTo(), SAnnotSelector::IncludeNamedAnnotAccession(), ICanceled::IsCanceled(), CSeq_loc_Base::IsInt(), label, LOG_POST, CGBObjectLoader::m_Ids, CGBObjectLoader::m_NAs, CGBObjectLoader::m_Objects, NON_CONST_ITERATE, CSeq_interval_Base::SetFrom(), CSeq_id_Base::SetGi(), CSeq_loc::SetInt(), CSeq_interval_Base::SetTo(), CException::what(), and CReportLoaderErrors::x_UpdateHTMLResults().

Execute() [8/12]

bool CGffObjectLoader::Execute ( ICanceled &  canceled )

virtual

Implements IExecuteUnit.

Definition at line 76 of file gff_object_loader.cpp.

References CScope::AddDefaults(), CSeq_entry::eContent, CLabel::eDefault, CFormatGuess::eGff2, CFormatGuess::eGff3, CFormatGuess::eGtf, CFormatGuess::eGvf, CReaderBase::fAllIdsAsLocal, file, flags, CReaderBase::fNumericIdsAsLocal, CFastaReader::fQuickIDCheck, AutoPtr< X, Del >::get(), CMapAssemblyParams::GetAssemblyAcc(), CGffLoadParams::GetFileFormat(), CObjectManager::GetInstance(), CLabel::GetLabel(), CGffLoadParams::GetMapAssembly(), CException::GetMsg(), CGffLoadParams::GetNameFeatSet(), CGffLoadParams::GetParseSeqIds(), CRef< C, Locker >::GetPointer(), CMapAssemblyParams::GetUseMapping(), ICanceled::IsCanceled(), ITERATE, label, CGffObjectLoader::m_FileNames, CGffObjectLoader::m_Objects, CGffObjectLoader::m_Params, NCBI_THROW, NcbiEmptyString, NON_CONST_ITERATE, CSeqFastaReader::ReadSequences(), AutoPtr< X, Del >::reset(), CRef< C, Locker >::Reset(), ToStdString(), CException::what(), CMappingObjectLoader::x_CreateMapper(), CReportLoaderErrors::x_UpdateHTMLResults(), and CMappingObjectLoader::x_UpdateMap().

Execute() [9/12]

bool CPhyObjectLoader::Execute ( ICanceled &  canceled )

virtual

Implements IExecuteUnit.

Definition at line 71 of file phy_object_loader.cpp.

References CScope::AddDefaults(), CLabel::eDefault, file, NStr::FindNoCase(), CObjectManager::GetInstance(), CLabel::GetLabel(), CException::GetMsg(), CRegexpUtil::GetResult(), ICanceled::IsCanceled(), ITERATE, label, CPhyObjectLoader::m_FileNames, CPhyObjectLoader::m_Objects, MakeDistanceSensitiveBioTreeContainer(), NcbiGetlineEOL(), NPOS, ReadNewickTree(), CRegexpUtil::Replace(), CException::what(), and CReportLoaderErrors::x_UpdateHTMLResults().

Execute() [10/12]

bool CPslObjectLoader::Execute ( ICanceled &  canceled )

virtual

Implements IExecuteUnit.

Definition at line 71 of file psl_object_loader.cpp.

References CStreamLineReader::AtEOF(), file, CReaderBase::fNormal, CMapAssemblyParams::GetAssemblyAcc(), CPslLoadParams::GetMapAssembly(), CException::GetMsg(), CMapAssemblyParams::GetUseMapping(), ICanceled::IsCanceled(), CPslObjectLoader::m_FileNames, CPslObjectLoader::m_Objects, CPslObjectLoader::m_Params, NStr::NumericToString(), CReaderBase::ReadSeqAnnot(), CRef< C, Locker >::Reset(), ToStdString(), CException::what(), CMappingObjectLoader::x_CreateMapper(), CReportLoaderErrors::x_UpdateHTMLResults(), and CMappingObjectLoader::x_UpdateMap().

Execute() [11/12]

bool CVcfObjectLoader::Execute ( ICanceled &  canceled )

virtual

Implements IExecuteUnit.

Definition at line 71 of file vcf_object_loader.cpp.

References CAnnot_descr_Base::CanGet(), CSeq_annot_Base::CanGetDesc(), data, file, CAnnot_descr_Base::Get(), CMapAssemblyParams::GetAssemblyAcc(), CSeq_annot_Base::GetDesc(), CBedLoadParams::GetMapAssembly(), CException::GetMsg(), CBedLoadParams::GetNumErrors(), CMapAssemblyParams::GetUseMapping(), ICanceled::IsCanceled(), ITERATE, label, CVcfObjectLoader::m_FileNames, CVcfObjectLoader::m_Objects, CVcfObjectLoader::m_Params, CVcfReader::ReadSeqAnnot(), CRef< C, Locker >::Reset(), CReaderBase::SetCanceler(), CSeq_annot::SetNameDesc(), ToStdString(), CException::what(), CMappingObjectLoader::x_CreateMapper(), CReportLoaderErrors::x_UpdateHTMLResults(), and CMappingObjectLoader::x_UpdateMap().

Execute() [12/12]

bool CWigObjectLoader::Execute ( ICanceled &  canceled )

virtual

Implements IExecuteUnit.

Definition at line 94 of file wig_object_loader.cpp.

References CUser_object::AddField(), CAnnot_descr_Base::CanGet(), data, file, CAnnot_descr_Base::Get(), CMapAssemblyParams::GetAssemblyAcc(), CWigLoadParams::GetMapAssembly(), CException::GetMsg(), CWigLoadParams::GetNumErrors(), CMapAssemblyParams::GetUseMapping(), ICanceled::IsCanceled(), ITERATE, label, CWigObjectLoader::m_FileNames, CWigObjectLoader::m_Objects, CWigObjectLoader::m_Params, NON_CONST_ITERATE, CReaderBase::ReadSeqAnnots(), CRef< C, Locker >::Reset(), s_GetAnnotId(), CReaderBase::SetCanceler(), CUser_object_Base::SetType(), CException::what(), CMappingObjectLoader::x_CreateMapper(), CReportLoaderErrors::x_UpdateHTMLResults(), and CMappingObjectLoader::x_UpdateMap().

GetAccession()

string CGenBankLoadOptionPanel::CAccDescriptor::GetAccession ( void  ) const

inline

Definition at line 92 of file gb_load_option_panel.hpp.

References CGenBankLoadOptionPanel::CAccDescriptor::m_Accession.

GetActiveObjects() [1/2]

void CTextView::GetActiveObjects ( TConstScopedObjects &  objects ) const

virtual

Reimplemented from ISelectionClient.

Definition at line 271 of file text_view.cpp.

References CTextPanel::GetActiveObjects(), ITERATE, CTextView::m_Window, and CProjectViewBase::x_HasProject().

GetActiveObjects() [2/2]

void CTextView::GetActiveObjects ( vector< TConstScopedObjects > &  sel )

virtual

Prioritized active objects.

Reimplemented from ISelectionClient.

Definition at line 281 of file text_view.cpp.

References CTextPanel::GetActiveObjects(), CTextView::m_Window, and CProjectViewBase::x_HasProject().

GetAdjMergeThreshold()

string CCpgSearchQuery::GetAdjMergeThreshold ( )

inline

Definition at line 109 of file cpg_search_tool.hpp.

References CCpgSearchQuery::m_AdjMergeThreshold.

Referenced by CCpgSearchJob::x_DoSearch().

GetAnnotNames()

set< string > CViewGraphic::GetAnnotNames ( ) const

virtual

Reimplemented from ISeqLocSearchContext.

Definition at line 684 of file view_graphic.cpp.

References fp, CSeqGraphicWidget::GetFeaturePanel(), CGraphicPanel::GetWidget(), and CViewGraphic::m_GraphicPanel.

GetAppSelection() [1/2]

void CSequinDesktopView::GetAppSelection ( TConstObjects &  objects )

virtual

Reimplemented from IGuiWidgetHost.

Definition at line 268 of file sequin_desktop_view.cpp.

References IServiceLocator::GetServiceByType(), ITERATE, and CProjectViewBase::m_Workbench.

GetAppSelection() [2/2]

void CTextView::GetAppSelection ( TConstObjects &  objects )

virtual

Reimplemented from IGuiWidgetHost.

Definition at line 337 of file text_view.cpp.

References IServiceLocator::GetServiceByType(), ITERATE, and CProjectViewBase::m_Workbench.

GetBitmapResource() [1/5]

wxBitmap CCleanupPanel::GetBitmapResource

(

const wxString &

name

)

Retrieves bitmap resources.

Get bitmap resources

Definition at line 170 of file cleanup_panel.cpp.

GetBitmapResource() [2/5]

wxBitmap CFASTAFormatParamsPanel::GetBitmapResource

(

const wxString &

name

)

Retrieves bitmap resources.

Definition at line 175 of file fasta_format_params_panel.cpp.

GetBitmapResource() [3/5]

wxBitmap CGenBankLoadOptionPanel::GetBitmapResource

(

const wxString &

name

)

Retrieves bitmap resources.

Definition at line 580 of file gb_load_option_panel.cpp.

GetBitmapResource() [4/5]

wxBitmap CGffParamsPanel::GetBitmapResource

(

const wxString &

name

)

Retrieves bitmap resources.

Get bitmap resources

Definition at line 237 of file gff_params_panel.cpp.

GetBitmapResource() [5/5]

wxBitmap CResolveIdDlg::GetBitmapResource

(

const wxString &

name

)

Retrieves bitmap resources.

Get bitmap resources

Definition at line 408 of file resolve_id_dlg.cpp.

GetCaseSensitive()

bool CFeatureSearchQuery::GetCaseSensitive ( )

inline

Definition at line 110 of file feature_search_tool.hpp.

References CFeatureSearchQuery::m_CaseSensitive.

GetCleanupMode()

int CCleanupParams::GetCleanupMode ( ) const

inline

Definition at line 85 of file cleanup_params.hpp.

References CCleanupParams::m_CleanupMode.

Referenced by CCleanupTool::x_CreateLoadingJob(), and CCleanupJob::x_CreateProjectItems().

GetCommandHandler() [1/3]

wxEvtHandler * CSeqTextView::GetCommandHandler ( )

virtual

IWMClient implementation.

Reimplemented from CProjectViewBase.

Definition at line 79 of file seq_text_view.cpp.

References _ASSERT, CSeqTextPanel::GetWidget(), and CSeqTextView::m_Window.

GetCommandHandler() [2/3]

wxEvtHandler * CSequinDesktopView::GetCommandHandler ( )

virtual

IWMClient implementation.

Reimplemented from CProjectViewBase.

Definition at line 98 of file sequin_desktop_view.cpp.

References _ASSERT, CSeqDesktopPanel::GetWidget(), and CSequinDesktopView::m_Window.

GetCommandHandler() [3/3]

wxEvtHandler * CTextView::GetCommandHandler ( )

virtual

IWMClient implementation.

Reimplemented from CProjectViewBase.

Definition at line 95 of file text_view.cpp.

References _ASSERT, CTextPanel::GetWidget(), and CTextView::m_Window.

GetCompatibleToolBars()

void CFeatTableView::GetCompatibleToolBars ( vector< string > &  names )

virtual

returns the names of toolbars compatible with this class (toolbars that are relevant and useful in the context of this class)

Reimplemented from CProjectViewBase.

Definition at line 210 of file view_feattable.cpp.

References names, and CProjectViewToolBatFactory::sm_SelTBName.

GetCurrentPanel() [1/12]

wxPanel * CGBFlatFileLoadManager::GetCurrentPanel ( )

virtual

Return the panel corresponding to the current state of Tool Manager.

Implements IUIToolManager.

Definition at line 117 of file gb_flatfile_load_manager.cpp.

References CGBFlatFileLoadManager::eParams, CGBFlatFileLoadManager::m_State, and CGBFlatFileLoadManager::x_GetParamsPanel().

GetCurrentPanel() [2/12]

wxPanel * CGenBankUILoadManager::GetCurrentPanel ( )

virtual

Return the panel corresponding to the current state of Tool Manager.

Implements IUIToolManager.

Definition at line 497 of file gb_ui_data_source.cpp.

References CGenBankUILoadManager::eSelectAcc, CGenBankUILoadManager::eSelectProject, IServiceLocator::GetServiceByType(), CGenBankUILoadManager::LoadSettings(), CGenBankUILoadManager::m_OptionPanel, CGenBankUILoadManager::m_ParentWindow, CGenBankUILoadManager::m_ProjectParams, CGenBankUILoadManager::m_ProjectSelPanel, CGenBankUILoadManager::m_SrvLocator, CGenBankUILoadManager::m_State, NULL, CProjectSelectorPanel::SetParams(), CProjectSelectorPanel::SetProjectService(), and CProjectSelectorPanel::TransferDataToWindow().

GetCurrentPanel() [3/12]

wxPanel * CPhyLoader::GetCurrentPanel ( )

virtual

Return the panel corresponding to the current state of Tool Manager.

Implements IUIToolManager.

Definition at line 104 of file phy_loader.cpp.

References NULL.

GetCurrentPanel() [4/12]

wxPanel * CRMLoader::GetCurrentPanel ( )

virtual

Return the panel corresponding to the current state of Tool Manager.

Implements IUIToolManager.

Definition at line 103 of file rm_load_manager.cpp.

References NULL.

GetCurrentPanel() [5/12]

wxPanel * C5ColLoadManager::GetCurrentPanel ( )

virtual

Return the panel corresponding to the current state of Tool Manager.

Implements IUIToolManager.

Definition at line 99 of file 5col_load_manager.cpp.

References NULL.

GetCurrentPanel() [6/12]

wxPanel * CAgpLoader::GetCurrentPanel ( )

virtual

Return the panel corresponding to the current state of Tool Manager.

Implements IUIToolManager.

Definition at line 110 of file agp_loader.cpp.

References CAgpLoader::eParams, CAgpLoader::m_State, NULL, and CAgpLoader::x_GetParamsPanel().

GetCurrentPanel() [7/12]

wxPanel * CBedLoadManager::GetCurrentPanel ( )

virtual

Return the panel corresponding to the current state of Tool Manager.

Implements IUIToolManager.

Definition at line 111 of file bed_load_manager.cpp.

References CBedLoadManager::eParams, CBedLoadManager::m_State, NULL, and CBedLoadManager::x_GetParamsPanel().

GetCurrentPanel() [8/12]

wxPanel * CColumnarVCFLoaderManager::GetCurrentPanel ( )

virtual

Return the panel corresponding to the current state of Tool Manager.

Implements IUIToolManager.

Definition at line 193 of file columnar_vcf_load_manager.cpp.

References CColumnarVCFLoaderManager::eAssembly, CColumnarVCFLoaderManager::eInfoSelection, CColumnarVCFLoaderManager::eRefSequences, CColumnarVCFLoaderManager::eSampleSelection, CColumnarVCFReader::GetInfoFields(), CColumnarVCFReader::GetSamples(), CVcfAssemblySelectionPanel::LoadSettings(), CColumnarVCFLoaderManager::m_AssemblyPanel, CColumnarVCFLoaderManager::m_ColumnsPanel, CColumnarVCFLoaderManager::m_FileNames, CColumnarVCFLoaderManager::m_GenCollAssm, CColumnarVCFLoaderManager::m_ParentWindow, CColumnarVCFLoaderManager::m_RefSeqIds, CColumnarVCFLoaderManager::m_RefSequencesPanel, CColumnarVCFLoaderManager::m_RegPath, CColumnarVCFLoaderManager::m_SamplesPanel, CColumnarVCFLoaderManager::m_State, CColumnarVCFLoaderManager::m_TopLevelSeqCount, CColumnarVCFLoaderManager::m_VCFreader, CVcfRefSequencesPanel::SetGenCollAssembly(), CVcfColumnSelectionPanel::SetInfoFields(), CVcfAssemblySelectionPanel::SetNewFile(), CVcfRefSequencesPanel::SetReferenceSeqIds(), CVcfAssemblySelectionPanel::SetRegistryPath(), CVcfSampleSelectionPanel::SetSamples(), and CVcfRefSequencesPanel::SetTopLevelSeqCount().

GetCurrentPanel() [9/12]

wxPanel * CFASTAFormatLoadManager::GetCurrentPanel ( )

virtual

Return the panel corresponding to the current state of Tool Manager.

Implements IUIToolManager.

Definition at line 124 of file fasta_format_load_manager.cpp.

References CFASTAFormatLoadManager::eParams, CFASTAFormatLoadManager::m_State, NULL, and CFASTAFormatLoadManager::x_GetParamsPanel().

GetCurrentPanel() [10/12]

wxPanel * CGffLoadManager::GetCurrentPanel ( )

virtual

Return the panel corresponding to the current state of Tool Manager.

Implements IUIToolManager.

Definition at line 114 of file gff_load_manager.cpp.

References CGffLoadManager::eParams, CGffLoadManager::m_State, NULL, and CGffLoadManager::x_GetParamsPanel().

GetCurrentPanel() [11/12]

wxPanel * CVCFLoaderManager::GetCurrentPanel ( )

virtual

Return the panel corresponding to the current state of Tool Manager.

Implements IUIToolManager.

Definition at line 111 of file vcf_load_manager.cpp.

References CVCFLoaderManager::eParams, CVCFLoaderManager::m_State, NULL, and CVCFLoaderManager::x_GetParamsPanel().

GetCurrentPanel() [12/12]

wxPanel * CWigLoadManager::GetCurrentPanel ( )

virtual

Return the panel corresponding to the current state of Tool Manager.

Implements IUIToolManager.

Definition at line 111 of file wig_load_manager.cpp.

References CWigLoadManager::eParams, CWigLoadManager::m_State, NULL, and CWigLoadManager::x_GetParamsPanel().

GetData() [1/6]

CCleanupParams& CCleanupPanel::GetData ( void  )

inline

Data access.

Definition at line 112 of file cleanup_panel.hpp.

References CCleanupPanel::m_data.

Referenced by CCleanupPanel::CreateControls(), CCleanupPanel::RestoreDefaults(), CCleanupPanel::TransferDataFromWindow(), and CCleanupTool::x_CreateLoadingJob().

GetData() [2/6]

CFastaLoadParams& CFASTAFormatParamsPanel::GetData ( void  )

inline

Data access.

Definition at line 90 of file fasta_format_params_panel.hpp.

References CFASTAFormatParamsPanel::m_data.

Referenced by CFASTAFormatLoadManager::CPage::CanLeavePage(), CFASTAFormatParamsPanel::CreateControls(), and CFASTAFormatLoadManager::DoTransition().

GetData() [3/6]

CGffLoadParams& CGffParamsPanel::GetData ( void  )

inline

Data access.

Definition at line 114 of file gff_params_panel.hpp.

References CGffParamsPanel::m_data.

Referenced by CGffParamsPanel::CreateControls(), CGffLoadManager::DoTransition(), CGffParamsPanel::TransferDataFromWindow(), CGffParamsPanel::TransferDataToWindow(), and CGffParamsPanel::x_SetParseSeqId().

GetData() [4/6]

const CCleanupParams& CCleanupPanel::GetData ( void  ) const

inline

Definition at line 113 of file cleanup_panel.hpp.

References CCleanupPanel::m_data.

GetData() [5/6]

const CFastaLoadParams& CFASTAFormatParamsPanel::GetData ( void  ) const

inline

Definition at line 91 of file fasta_format_params_panel.hpp.

References CFASTAFormatParamsPanel::m_data.

GetData() [6/6]

const CGffLoadParams& CGffParamsPanel::GetData ( void  ) const

inline

Definition at line 115 of file gff_params_panel.hpp.

References CGffParamsPanel::m_data.

GetDbName()

string CEntrezSearchQuery::GetDbName ( void  ) const

inline

Definition at line 98 of file entrez_search_tool.hpp.

References CEntrezSearchQuery::m_DbName.

Referenced by CEntrezSearchJob::CEntrezSearchJob(), CEntrezSearchJob::x_DoSearch(), and CEntrezSearchJob::x_GetNewOLTModel().

GetDbNames()

void CEntrezSearchTool::GetDbNames

(

vector< string > &

name

)

GetDefaultCommand()

int CGenBankUIDataSource::GetDefaultCommand ( void  )

virtual

Reimplemented from IUIDataSource.

Definition at line 392 of file gb_ui_data_source.cpp.

References eCmdLoadFromGenBank.

GetDescr() [1/2]

const IUIObject & CGenBankUIDataSource::GetDescr ( )

virtual

returns UI description of the object (label, icon etc.)

Implements IUIDataSource.

Definition at line 184 of file gb_ui_data_source.cpp.

References CGenBankUIDataSource::m_Descr.

GetDescr() [2/2]

const IUIObject & CGenBankUIDataSourceType::GetDescr ( )

virtual

returns UI description of the type (label, icon etc.)

Implements IUIDataSourceType.

Definition at line 417 of file gb_ui_data_source.cpp.

References CGenBankUIDataSourceType::m_Descr.

GetDescription() [1/20]

string CSNPSearchTool::GetDescription ( ) const

virtual

returns a detailed description of the method that is used in UI

Implements CSearchToolBase.

Definition at line 108 of file snp_search_tool.cpp.

GetDescription() [2/20]

string C5ColObjectLoader::GetDescription ( void  ) const

virtual

Implements IObjectLoader.

Definition at line 61 of file 5col_object_loader.cpp.

GetDescription() [3/20]

string CAgpObjectLoader::GetDescription ( void  ) const

virtual

Implements IObjectLoader.

Definition at line 61 of file agp_object_loader.cpp.

GetDescription() [4/20]

string CAssemblyObjectLoader::GetDescription ( void  ) const

virtual

Implements IObjectLoader.

Definition at line 70 of file assembly_object_loader.cpp.

References CAssemblyObjectLoader::m_Descr.

GetDescription() [5/20]

string CBedObjectLoader::GetDescription ( void  ) const

virtual

Implements IObjectLoader.

Definition at line 64 of file bed_object_loader.cpp.

GetDescription() [6/20]

string CChainLoader::GetDescription ( void  ) const

virtual

Implements IObjectLoader.

Definition at line 50 of file chain_loader.cpp.

References first(), and CChainLoader::m_Loaders.

GetDescription() [7/20]

string CGBFlatFileObjectLoader::GetDescription ( void  ) const

virtual

Implements IObjectLoader.

Definition at line 66 of file gb_flatfile_object_loader.cpp.

GetDescription() [8/20]

string CGBObjectLoader::GetDescription ( void  ) const

virtual

Implements IObjectLoader.

Definition at line 57 of file gb_object_loader.cpp.

References CGBObjectLoader::m_Ids, CGBObjectLoader::m_NAs, n, and NStr::NumericToString().

GetDescription() [9/20]

string CGffObjectLoader::GetDescription ( void  ) const

virtual

Implements IObjectLoader.

Definition at line 66 of file gff_object_loader.cpp.

GetDescription() [10/20]

string CPhyObjectLoader::GetDescription ( void  ) const

virtual

Implements IObjectLoader.

Definition at line 61 of file phy_object_loader.cpp.

GetDescription() [11/20]

string CPslObjectLoader::GetDescription ( void  ) const

virtual

Implements IObjectLoader.

Definition at line 61 of file psl_object_loader.cpp.

GetDescription() [12/20]

string CVcfObjectLoader::GetDescription ( void  ) const

virtual

Implements IObjectLoader.

Definition at line 61 of file vcf_object_loader.cpp.

GetDescription() [13/20]

string CWigObjectLoader::GetDescription ( void  ) const

virtual

Implements IObjectLoader.

Definition at line 84 of file wig_object_loader.cpp.

GetDescription() [14/20]

string CComponentSearchTool::GetDescription ( ) const

virtual

returns a detailed description of the method that is used in UI

Implements CSearchToolBase.

Definition at line 86 of file component_search_tool.cpp.

GetDescription() [15/20]

string CCpgSearchTool::GetDescription ( ) const

virtual

returns a detailed description of the method that is used in UI

Implements CSearchToolBase.

Definition at line 207 of file cpg_search_tool.cpp.

GetDescription() [16/20]

string CEntrezSearchTool::GetDescription ( ) const

virtual

returns a detailed description of the method that is used in UI

Implements CSearchToolBase.

Definition at line 103 of file entrez_search_tool.cpp.

GetDescription() [17/20]

string CFeatureSearchTool::GetDescription ( ) const

virtual

returns a detailed description of the method that is used in UI

Implements CSearchToolBase.

Definition at line 91 of file feature_search_tool.cpp.

GetDescription() [18/20]

string COrfSearchTool::GetDescription ( ) const

virtual

returns a detailed description of the method that is used in UI

Implements CSearchToolBase.

Definition at line 185 of file orf_search_tool.cpp.

GetDescription() [19/20]

string CSequenceSearchTool::GetDescription ( ) const

virtual

returns a detailed description of the method that is used in UI

Implements CSearchToolBase.

Definition at line 132 of file sequence_search_tool.cpp.

GetDescription() [20/20]

string CVcfSearchTool::GetDescription ( ) const

virtual

returns a detailed description of the method that is used in UI

Implements CSearchToolBase.

Definition at line 87 of file vcf_search_tool.cpp.

GetDescriptor() [1/12]

const IUIObject & CGBFlatFileLoadManager::GetDescriptor ( ) const

virtual

Returns the object describing this tool (UI meta data).

Implements IUIToolManager.

Definition at line 99 of file gb_flatfile_load_manager.cpp.

References CGBFlatFileLoadManager::m_Descr.

GetDescriptor() [2/12]

const IUIObject & CGenBankUILoadManager::GetDescriptor ( ) const

virtual

Returns the object describing this tool (UI meta data).

Implements IUIToolManager.

Definition at line 475 of file gb_ui_data_source.cpp.

References CGenBankUILoadManager::m_Descriptor.

GetDescriptor() [3/12]

const IUIObject & CPhyLoader::GetDescriptor ( ) const

virtual

Returns the object describing this tool (UI meta data).

Implements IUIToolManager.

Definition at line 85 of file phy_loader.cpp.

References CPhyLoader::m_Descr.

GetDescriptor() [4/12]

const IUIObject & CRMLoader::GetDescriptor ( ) const

virtual

Returns the object describing this tool (UI meta data).

Implements IUIToolManager.

Definition at line 87 of file rm_load_manager.cpp.

References CRMLoader::m_Descr.

GetDescriptor() [5/12]

const IUIObject & C5ColLoadManager::GetDescriptor ( ) const

virtual

Returns the object describing this tool (UI meta data).

Implements IUIToolManager.

Definition at line 83 of file 5col_load_manager.cpp.

References C5ColLoadManager::m_Descr.

GetDescriptor() [6/12]

const IUIObject & CAgpLoader::GetDescriptor ( ) const

virtual

Returns the object describing this tool (UI meta data).

Implements IUIToolManager.

Definition at line 91 of file agp_loader.cpp.

References CAgpLoader::m_Descr.

GetDescriptor() [7/12]

const IUIObject & CBedLoadManager::GetDescriptor ( ) const

virtual

Returns the object describing this tool (UI meta data).

Implements IUIToolManager.

Definition at line 92 of file bed_load_manager.cpp.

References CBedLoadManager::m_Descr.

GetDescriptor() [8/12]

const IUIObject & CColumnarVCFLoaderManager::GetDescriptor ( ) const

virtual

Returns the object describing this tool (UI meta data).

Implements IUIToolManager.

Definition at line 172 of file columnar_vcf_load_manager.cpp.

References CColumnarVCFLoaderManager::m_Descr.

GetDescriptor() [9/12]

const IUIObject & CFASTAFormatLoadManager::GetDescriptor ( ) const

virtual

Returns the object describing this tool (UI meta data).

Implements IUIToolManager.

Definition at line 105 of file fasta_format_load_manager.cpp.

References CFASTAFormatLoadManager::m_Descr.

GetDescriptor() [10/12]

const IUIObject & CGffLoadManager::GetDescriptor ( ) const

virtual

Returns the object describing this tool (UI meta data).

Implements IUIToolManager.

Definition at line 95 of file gff_load_manager.cpp.

References CGffLoadManager::m_Descr.

GetDescriptor() [11/12]

const IUIObject & CVCFLoaderManager::GetDescriptor ( ) const

virtual

Returns the object describing this tool (UI meta data).

Implements IUIToolManager.

Definition at line 93 of file vcf_load_manager.cpp.

References CVCFLoaderManager::m_Descr.

GetDescriptor() [12/12]

const IUIObject & CWigLoadManager::GetDescriptor ( ) const

virtual

Returns the object describing this tool (UI meta data).

Implements IUIToolManager.

Definition at line 92 of file wig_load_manager.cpp.

References CWigLoadManager::m_Descr.

GetDMContextName()

string CViewGraphic::GetDMContextName ( )

virtual

returns Name of the context to be used in UI

Implements IDataMiningContext.

Definition at line 371 of file view_graphic.cpp.

References CProjectViewBase::GetClientLabel().

GetExecuteUnit() [1/11]

IExecuteUnit * CGBFlatFileLoadManager::GetExecuteUnit ( )

virtual

Reimplemented from IFileLoadPanelClient.

Definition at line 182 of file gb_flatfile_load_manager.cpp.

References CGBFlatFileLoadManager::m_FileNames, and CGBFlatFileLoadManager::m_Params.

GetExecuteUnit() [2/11]

IExecuteUnit * CPhyLoader::GetExecuteUnit ( )

virtual

Reimplemented from IFileLoadPanelClient.

Definition at line 153 of file phy_loader.cpp.

References CPhyLoader::m_FileNames.

GetExecuteUnit() [3/11]

IExecuteUnit * CRMLoader::GetExecuteUnit ( )

virtual

Reimplemented from IFileLoadPanelClient.

Definition at line 140 of file rm_load_manager.cpp.

References CRMLoader::m_FileNames.

GetExecuteUnit() [4/11]

IExecuteUnit * C5ColLoadManager::GetExecuteUnit ( )

virtual

Reimplemented from IFileLoadPanelClient.

Definition at line 134 of file 5col_load_manager.cpp.

References C5ColLoadManager::m_FileNames.

GetExecuteUnit() [5/11]

IExecuteUnit * CAgpLoader::GetExecuteUnit ( )

virtual

Reimplemented from IFileLoadPanelClient.

Definition at line 175 of file agp_loader.cpp.

References CAgpLoader::m_FileNames, and CAgpLoader::m_Params.

GetExecuteUnit() [6/11]

IExecuteUnit * CBedLoadManager::GetExecuteUnit ( )

virtual

Reimplemented from IFileLoadPanelClient.

Definition at line 175 of file bed_load_manager.cpp.

References CBedLoadManager::m_FileNames, and CBedLoadManager::m_Params.

GetExecuteUnit() [7/11]

IExecuteUnit * CColumnarVCFLoaderManager::GetExecuteUnit ( )

virtual

Reimplemented from IFileLoadPanelClient.

Definition at line 420 of file columnar_vcf_load_manager.cpp.

GetExecuteUnit() [8/11]

IExecuteUnit * CFASTAFormatLoadManager::GetExecuteUnit ( )

virtual

Reimplemented from IFileLoadPanelClient.

Definition at line 189 of file fasta_format_load_manager.cpp.

References CFASTAFormatLoadManager::m_FileNames, and CFASTAFormatLoadManager::m_Params.

GetExecuteUnit() [9/11]

IExecuteUnit * CGffLoadManager::GetExecuteUnit ( )

virtual

Reimplemented from IFileLoadPanelClient.

Definition at line 179 of file gff_load_manager.cpp.

References CGffLoadManager::m_FileNames, and CGffLoadManager::m_Params.

GetExecuteUnit() [10/11]

IExecuteUnit * CVCFLoaderManager::GetExecuteUnit ( )

virtual

Reimplemented from IFileLoadPanelClient.

Definition at line 176 of file vcf_load_manager.cpp.

References CVCFLoaderManager::m_FileNames, and CVCFLoaderManager::m_Params.

GetExecuteUnit() [11/11]

IExecuteUnit * CWigLoadManager::GetExecuteUnit ( )

virtual

Reimplemented from IFileLoadPanelClient.

Definition at line 177 of file wig_load_manager.cpp.

References CWigLoadManager::m_FileNames, and CWigLoadManager::m_Params.

GetExtensionIdentifier() [1/30]

string CCleanupTool::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements CAlgoToolManagerBase.

Definition at line 67 of file cleanup_tool.cpp.

GetExtensionIdentifier() [2/30]

string CGBFlatFileLoadManager::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 229 of file gb_flatfile_load_manager.cpp.

GetExtensionIdentifier() [3/30]

string CGenBankUIDataSource::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 123 of file gb_ui_data_source.cpp.

GetExtensionIdentifier() [4/30]

string CGenBankUIDataSourceType::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 435 of file gb_ui_data_source.cpp.

GetExtensionIdentifier() [5/30]

string CMergeTool::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements CAlgoToolManagerBase.

Definition at line 68 of file merge_tool.cpp.

GetExtensionIdentifier() [6/30]

string CSeqTextViewFactory::GetExtensionIdentifier ( ) const

virtual

CSeqTextViewFactory.

Implements IExtension.

Definition at line 256 of file seq_text_view.cpp.

GetExtensionIdentifier() [7/30]

string CSNPSearchTool::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 137 of file snp_search_tool.cpp.

GetExtensionIdentifier() [8/30]

string CFeatTableViewFactory::GetExtensionIdentifier ( ) const

virtual

CFeatTableViewFactory.

Implements IExtension.

Definition at line 565 of file view_feattable.cpp.

GetExtensionIdentifier() [9/30]

string CViewGraphicFactory::GetExtensionIdentifier ( ) const

virtual

CViewGraphicFactory.

Implements IExtension.

Definition at line 697 of file view_graphic.cpp.

GetExtensionIdentifier() [10/30]

string CAutodefToolManager::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements CAlgoToolManagerBase.

Definition at line 72 of file autodef_tool_manager.cpp.

GetExtensionIdentifier() [11/30]

string CSequinDesktopViewFactory::GetExtensionIdentifier ( ) const

virtual

CSequinDesktopViewFactory.

Implements IExtension.

Definition at line 367 of file sequin_desktop_view.cpp.

GetExtensionIdentifier() [12/30]

string CSrcEditTool::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements CAlgoToolManagerBase.

Definition at line 76 of file srcedit_tool.cpp.

GetExtensionIdentifier() [13/30]

string CPhyLoader::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 201 of file phy_loader.cpp.

GetExtensionIdentifier() [14/30]

string CRMLoader::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 188 of file rm_load_manager.cpp.

GetExtensionIdentifier() [15/30]

string C5ColLoadManager::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 182 of file 5col_load_manager.cpp.

GetExtensionIdentifier() [16/30]

string CAgpLoader::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 221 of file agp_loader.cpp.

GetExtensionIdentifier() [17/30]

string CBedLoadManager::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 224 of file bed_load_manager.cpp.

GetExtensionIdentifier() [18/30]

string CColumnarVCFLoaderManager::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 467 of file columnar_vcf_load_manager.cpp.

GetExtensionIdentifier() [19/30]

string CComponentSearchTool::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 119 of file component_search_tool.cpp.

GetExtensionIdentifier() [20/30]

string CCpgSearchTool::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 240 of file cpg_search_tool.cpp.

GetExtensionIdentifier() [21/30]

string CEntrezSearchTool::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 132 of file entrez_search_tool.cpp.

GetExtensionIdentifier() [22/30]

string CFASTAFormatLoadManager::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 236 of file fasta_format_load_manager.cpp.

GetExtensionIdentifier() [23/30]

string CFeatureSearchTool::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 123 of file feature_search_tool.cpp.

GetExtensionIdentifier() [24/30]

string CGffLoadManager::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 238 of file gff_load_manager.cpp.

GetExtensionIdentifier() [25/30]

string COrfSearchTool::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 218 of file orf_search_tool.cpp.

GetExtensionIdentifier() [26/30]

string CSequenceSearchTool::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 164 of file sequence_search_tool.cpp.

GetExtensionIdentifier() [27/30]

string CTextViewFactory::GetExtensionIdentifier ( ) const

virtual

CTextViewFactory.

Implements IExtension.

Definition at line 389 of file text_view.cpp.

GetExtensionIdentifier() [28/30]

string CVCFLoaderManager::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 223 of file vcf_load_manager.cpp.

GetExtensionIdentifier() [29/30]

string CVcfSearchTool::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 126 of file vcf_search_tool.cpp.

GetExtensionIdentifier() [30/30]

string CWigLoadManager::GetExtensionIdentifier ( ) const

virtual

returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this"

Implements IExtension.

Definition at line 223 of file wig_load_manager.cpp.

GetExtensionLabel() [1/30]

string CCleanupTool::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements CAlgoToolManagerBase.

Definition at line 73 of file cleanup_tool.cpp.

GetExtensionLabel() [2/30]

string CGBFlatFileLoadManager::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 235 of file gb_flatfile_load_manager.cpp.

GetExtensionLabel() [3/30]

string CGenBankUIDataSource::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 129 of file gb_ui_data_source.cpp.

GetExtensionLabel() [4/30]

string CGenBankUIDataSourceType::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 442 of file gb_ui_data_source.cpp.

References CUIObject::GetLabel(), and CGenBankUIDataSourceType::m_Descr.

GetExtensionLabel() [5/30]

string CMergeTool::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements CAlgoToolManagerBase.

Definition at line 74 of file merge_tool.cpp.

GetExtensionLabel() [6/30]

string CSeqTextViewFactory::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 263 of file seq_text_view.cpp.

GetExtensionLabel() [7/30]

string CSNPSearchTool::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 142 of file snp_search_tool.cpp.

GetExtensionLabel() [8/30]

string CFeatTableViewFactory::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 571 of file view_feattable.cpp.

GetExtensionLabel() [9/30]

string CViewGraphicFactory::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 704 of file view_graphic.cpp.

GetExtensionLabel() [10/30]

string CAutodefToolManager::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements CAlgoToolManagerBase.

Definition at line 78 of file autodef_tool_manager.cpp.

GetExtensionLabel() [11/30]

string CSequinDesktopViewFactory::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 374 of file sequin_desktop_view.cpp.

GetExtensionLabel() [12/30]

string CSrcEditTool::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements CAlgoToolManagerBase.

Definition at line 82 of file srcedit_tool.cpp.

GetExtensionLabel() [13/30]

string CPhyLoader::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 208 of file phy_loader.cpp.

GetExtensionLabel() [14/30]

string CRMLoader::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 195 of file rm_load_manager.cpp.

GetExtensionLabel() [15/30]

string C5ColLoadManager::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 188 of file 5col_load_manager.cpp.

GetExtensionLabel() [16/30]

string CAgpLoader::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 228 of file agp_loader.cpp.

GetExtensionLabel() [17/30]

string CBedLoadManager::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 231 of file bed_load_manager.cpp.

GetExtensionLabel() [18/30]

string CColumnarVCFLoaderManager::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 474 of file columnar_vcf_load_manager.cpp.

GetExtensionLabel() [19/30]

string CComponentSearchTool::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 124 of file component_search_tool.cpp.

GetExtensionLabel() [20/30]

string CCpgSearchTool::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 245 of file cpg_search_tool.cpp.

GetExtensionLabel() [21/30]

string CEntrezSearchTool::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 137 of file entrez_search_tool.cpp.

GetExtensionLabel() [22/30]

string CFASTAFormatLoadManager::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 243 of file fasta_format_load_manager.cpp.

GetExtensionLabel() [23/30]

string CFeatureSearchTool::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 129 of file feature_search_tool.cpp.

GetExtensionLabel() [24/30]

string CGffLoadManager::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 244 of file gff_load_manager.cpp.

GetExtensionLabel() [25/30]

string COrfSearchTool::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 223 of file orf_search_tool.cpp.

GetExtensionLabel() [26/30]

string CSequenceSearchTool::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 169 of file sequence_search_tool.cpp.

GetExtensionLabel() [27/30]

string CTextViewFactory::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 396 of file text_view.cpp.

GetExtensionLabel() [28/30]

string CVCFLoaderManager::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 230 of file vcf_load_manager.cpp.

GetExtensionLabel() [29/30]

string CVcfSearchTool::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 131 of file vcf_search_tool.cpp.

GetExtensionLabel() [30/30]

string CWigLoadManager::GetExtensionLabel ( ) const

virtual

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

Implements IExtension.

Definition at line 230 of file wig_load_manager.cpp.

GetFeatTypes()

const TFeatTypeItemSet& CFeatureSearchQuery::GetFeatTypes ( void  )

inline

Definition at line 111 of file feature_search_tool.hpp.

References CFeatureSearchQuery::m_FeatTypesSet.

GetFileFormat()

int CGffLoadParams::GetFileFormat ( ) const

inline

Definition at line 85 of file gff_load_params.hpp.

References CGffLoadParams::m_FileFormat.

Referenced by CGffObjectLoader::Execute().

GetFileLoaderId() [1/11]

virtual string CGBFlatFileLoadManager::GetFileLoaderId ( ) const

inlinevirtual

Implements IFileFormatLoaderManager.

Definition at line 71 of file gb_flatfile_load_manager.hpp.

References CGBFlatFileLoadManager::Id().

GetFileLoaderId() [2/11]

virtual string CPhyLoader::GetFileLoaderId ( ) const

inlinevirtual

Implements IFileFormatLoaderManager.

Definition at line 71 of file phy_loader.hpp.

References CPhyLoader::Id().

GetFileLoaderId() [3/11]

virtual string CRMLoader::GetFileLoaderId ( ) const

inlinevirtual

Implements IFileFormatLoaderManager.

Definition at line 69 of file rm_load_manager.hpp.

References CRMLoader::Id().

GetFileLoaderId() [4/11]

virtual string C5ColLoadManager::GetFileLoaderId ( ) const

inlinevirtual

Implements IFileFormatLoaderManager.

Definition at line 74 of file 5col_load_manager.hpp.

References C5ColLoadManager::Id().

GetFileLoaderId() [5/11]

virtual string CAgpLoader::GetFileLoaderId ( ) const

inlinevirtual

Implements IFileFormatLoaderManager.

Definition at line 76 of file agp_loader.hpp.

References CAgpLoader::Id().

GetFileLoaderId() [6/11]

virtual string CBedLoadManager::GetFileLoaderId ( ) const

inlinevirtual

Implements IFileFormatLoaderManager.

Definition at line 76 of file bed_load_manager.hpp.

References CBedLoadManager::Id().

GetFileLoaderId() [7/11]

virtual string CColumnarVCFLoaderManager::GetFileLoaderId ( ) const

inlinevirtual

Implements IFileFormatLoaderManager.

Definition at line 80 of file columnar_vcf_load_manager.hpp.

References CColumnarVCFLoaderManager::Id().

GetFileLoaderId() [8/11]

virtual string CFASTAFormatLoadManager::GetFileLoaderId ( ) const

inlinevirtual

Implements IFileFormatLoaderManager.

Definition at line 74 of file fasta_format_load_manager.hpp.

References CFASTAFormatLoadManager::Id().

GetFileLoaderId() [9/11]

virtual string CGffLoadManager::GetFileLoaderId ( ) const

inlinevirtual

Implements IFileFormatLoaderManager.

Definition at line 79 of file gff_load_manager.hpp.

References CGffLoadManager::Id().

GetFileLoaderId() [10/11]

virtual string CVCFLoaderManager::GetFileLoaderId ( ) const

inlinevirtual

Implements IFileFormatLoaderManager.

Definition at line 74 of file vcf_load_manager.hpp.

References CVCFLoaderManager::Id().

GetFileLoaderId() [11/11]

virtual string CWigLoadManager::GetFileLoaderId ( ) const

inlinevirtual

Implements IFileFormatLoaderManager.

Definition at line 76 of file wig_load_manager.hpp.

References CWigLoadManager::Id().

GetFilenames() [1/11]

void CGBFlatFileLoadManager::GetFilenames ( vector< wxString > &  filenames ) const

virtual

get actual filenames that will be opened

Implements IFileFormatLoaderManager.

Definition at line 206 of file gb_flatfile_load_manager.cpp.

References filenames, and CGBFlatFileLoadManager::m_FileNames.

GetFilenames() [2/11]

void CPhyLoader::GetFilenames ( vector< wxString > &  filenames ) const

virtual

get actual filenames that will be opened

Implements IFileFormatLoaderManager.

Definition at line 178 of file phy_loader.cpp.

References filenames, and CPhyLoader::m_FileNames.

GetFilenames() [3/11]

void CRMLoader::GetFilenames ( vector< wxString > &  filenames ) const

virtual

get actual filenames that will be opened

Implements IFileFormatLoaderManager.

Definition at line 165 of file rm_load_manager.cpp.

References filenames, and CRMLoader::m_FileNames.

GetFilenames() [4/11]

void C5ColLoadManager::GetFilenames ( vector< wxString > &  filenames ) const

virtual

get actual filenames that will be opened

Implements IFileFormatLoaderManager.

Definition at line 159 of file 5col_load_manager.cpp.

References filenames, and C5ColLoadManager::m_FileNames.

GetFilenames() [5/11]

void CAgpLoader::GetFilenames ( vector< wxString > &  filenames ) const

virtual

get actual filenames that will be opened

Implements IFileFormatLoaderManager.

Definition at line 199 of file agp_loader.cpp.

References filenames, and CAgpLoader::m_FileNames.

GetFilenames() [6/11]

void CBedLoadManager::GetFilenames ( vector< wxString > &  filenames ) const

virtual

get actual filenames that will be opened

Implements IFileFormatLoaderManager.

Definition at line 199 of file bed_load_manager.cpp.

References filenames, and CBedLoadManager::m_FileNames.

GetFilenames() [7/11]

void CColumnarVCFLoaderManager::GetFilenames ( vector< wxString > &  filenames ) const

virtual

get actual filenames that will be opened

Implements IFileFormatLoaderManager.

Definition at line 444 of file columnar_vcf_load_manager.cpp.

References filenames, and CColumnarVCFLoaderManager::m_FileNames.

GetFilenames() [8/11]

void CFASTAFormatLoadManager::GetFilenames ( vector< wxString > &  filenames ) const

virtual

get actual filenames that will be opened

Implements IFileFormatLoaderManager.

Definition at line 213 of file fasta_format_load_manager.cpp.

References filenames, and CFASTAFormatLoadManager::m_FileNames.

GetFilenames() [9/11]

void CGffLoadManager::GetFilenames ( vector< wxString > &  filenames ) const

virtual

get actual filenames that will be opened

Implements IFileFormatLoaderManager.

Definition at line 205 of file gff_load_manager.cpp.

References filenames, and CGffLoadManager::m_FileNames.

GetFilenames() [10/11]

void CVCFLoaderManager::GetFilenames ( vector< wxString > &  filenames ) const

virtual

get actual filenames that will be opened

Implements IFileFormatLoaderManager.

Definition at line 200 of file vcf_load_manager.cpp.

References filenames, and CVCFLoaderManager::m_FileNames.

GetFilenames() [11/11]

void CWigLoadManager::GetFilenames ( vector< wxString > &  filenames ) const

virtual

get actual filenames that will be opened

Implements IFileFormatLoaderManager.

Definition at line 200 of file wig_load_manager.cpp.

References filenames, and CWigLoadManager::m_FileNames.

GetFirstPage() [1/11]

virtual IWizardPage* CGBFlatFileLoadManager::GetFirstPage ( )

inlinevirtual

Returns first options page (if any) of the tool to be shown in wizard dialog.

Reimplemented from IToolWizard.

Definition at line 88 of file gb_flatfile_load_manager.hpp.

GetFirstPage() [2/11]

virtual IWizardPage* CPhyLoader::GetFirstPage ( )

inlinevirtual

Returns first options page (if any) of the tool to be shown in wizard dialog.

Reimplemented from IToolWizard.

Definition at line 89 of file phy_loader.hpp.

GetFirstPage() [3/11]

virtual IWizardPage* CRMLoader::GetFirstPage ( )

inlinevirtual

Returns first options page (if any) of the tool to be shown in wizard dialog.

Reimplemented from IToolWizard.

Definition at line 86 of file rm_load_manager.hpp.

GetFirstPage() [4/11]

virtual IWizardPage* C5ColLoadManager::GetFirstPage ( )

inlinevirtual

Returns first options page (if any) of the tool to be shown in wizard dialog.

Reimplemented from IToolWizard.

Definition at line 91 of file 5col_load_manager.hpp.

GetFirstPage() [5/11]

virtual IWizardPage* CAgpLoader::GetFirstPage ( )

inlinevirtual

Returns first options page (if any) of the tool to be shown in wizard dialog.

Reimplemented from IToolWizard.

Definition at line 93 of file agp_loader.hpp.

GetFirstPage() [6/11]

virtual IWizardPage* CBedLoadManager::GetFirstPage ( )

inlinevirtual

Returns first options page (if any) of the tool to be shown in wizard dialog.

Reimplemented from IToolWizard.

Definition at line 93 of file bed_load_manager.hpp.

GetFirstPage() [7/11]

virtual IWizardPage* CColumnarVCFLoaderManager::GetFirstPage ( )

inlinevirtual

Returns first options page (if any) of the tool to be shown in wizard dialog.

Reimplemented from IToolWizard.

Definition at line 97 of file columnar_vcf_load_manager.hpp.

GetFirstPage() [8/11]

virtual IWizardPage* CFASTAFormatLoadManager::GetFirstPage ( )

inlinevirtual

Returns first options page (if any) of the tool to be shown in wizard dialog.

Reimplemented from IToolWizard.

Definition at line 92 of file fasta_format_load_manager.hpp.

GetFirstPage() [9/11]

virtual IWizardPage* CGffLoadManager::GetFirstPage ( )

inlinevirtual

Returns first options page (if any) of the tool to be shown in wizard dialog.

Reimplemented from IToolWizard.

Definition at line 96 of file gff_load_manager.hpp.

GetFirstPage() [10/11]

virtual IWizardPage* CVCFLoaderManager::GetFirstPage ( )

inlinevirtual

Returns first options page (if any) of the tool to be shown in wizard dialog.

Reimplemented from IToolWizard.

Definition at line 91 of file vcf_load_manager.hpp.

GetFirstPage() [11/11]

virtual IWizardPage* CWigLoadManager::GetFirstPage ( )

inlinevirtual

Returns first options page (if any) of the tool to be shown in wizard dialog.

Reimplemented from IToolWizard.

Definition at line 93 of file wig_load_manager.hpp.

GetFlags() [1/2]

IDMSearchTool::TUIToolFlags COrfSearchTool::GetFlags ( void  )

virtual

special flags

Reimplemented from CSearchToolBase.

Definition at line 228 of file orf_search_tool.cpp.

References IDMSearchTool::eCache, and IDMSearchTool::eFilter.

GetFlags() [2/2]

IDMSearchTool::TUIToolFlags CSequenceSearchTool::GetFlags ( void  )

virtual

special flags

Reimplemented from CSearchToolBase.

Definition at line 174 of file sequence_search_tool.cpp.

References IDMSearchTool::eCache, and IDMSearchTool::eFilter.

GetForceLocalIDs()

bool CFastaLoadParams::GetForceLocalIDs ( ) const

inline

Definition at line 80 of file fasta_load_params.hpp.

References CFastaLoadParams::m_ForceLocalIDs.

Referenced by s_GetFlags().

GetFormatWildcard() [1/22]

wxString CGBFlatFileLoadManager::GetFormatWildcard ( )

virtual

IFileFormatLoaderManager - additional members

Implements IFileFormatLoaderManager.

Definition at line 187 of file gb_flatfile_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kGenBank, and wxT.

GetFormatWildcard() [2/22]

wxString CPhyLoader::GetFormatWildcard ( )

virtual

IFileFormatLoaderManager - additional members

Implements IFileFormatLoaderManager.

Definition at line 159 of file phy_loader.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kTree, and wxT.

GetFormatWildcard() [3/22]

wxString CRMLoader::GetFormatWildcard ( )

virtual

IFileFormatLoaderManager - additional members

Implements IFileFormatLoaderManager.

Definition at line 146 of file rm_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kTxt, and wxT.

GetFormatWildcard() [4/22]

wxString C5ColLoadManager::GetFormatWildcard ( )

virtual

IFileFormatLoaderManager - additional members

Implements IFileFormatLoaderManager.

Definition at line 140 of file 5col_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::k5Column, CFileExtensions::kAllFiles, and wxT.

GetFormatWildcard() [5/22]

wxString CAgpLoader::GetFormatWildcard ( )

virtual

IFileFormatLoaderManager - additional members

Implements IFileFormatLoaderManager.

Definition at line 180 of file agp_loader.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAGP, CFileExtensions::kAllFiles, and wxT.

GetFormatWildcard() [6/22]

wxString CBedLoadManager::GetFormatWildcard ( )

virtual

IFileFormatLoaderManager - additional members

Implements IFileFormatLoaderManager.

Definition at line 180 of file bed_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kBED, and wxT.

GetFormatWildcard() [7/22]

wxString CColumnarVCFLoaderManager::GetFormatWildcard ( )

virtual

IFileFormatLoaderManager - additional members

Implements IFileFormatLoaderManager.

Definition at line 425 of file columnar_vcf_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kVCF, and wxT.

GetFormatWildcard() [8/22]

wxString CFASTAFormatLoadManager::GetFormatWildcard ( )

virtual

IFileFormatLoaderManager - additional members

Implements IFileFormatLoaderManager.

Definition at line 194 of file fasta_format_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kFASTA, and wxT.

GetFormatWildcard() [9/22]

wxString CGffLoadManager::GetFormatWildcard ( )

virtual

IFileFormatLoaderManager - additional members

Implements IFileFormatLoaderManager.

Definition at line 185 of file gff_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kGFF, CFileExtensions::kGTF, and wxT.

GetFormatWildcard() [10/22]

wxString CVCFLoaderManager::GetFormatWildcard ( )

virtual

IFileFormatLoaderManager - additional members

Implements IFileFormatLoaderManager.

Definition at line 181 of file vcf_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kVCF, and wxT.

GetFormatWildcard() [11/22]

wxString CWigLoadManager::GetFormatWildcard ( )

virtual

IFileFormatLoaderManager - additional members

Implements IFileFormatLoaderManager.

Definition at line 182 of file wig_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kWIG, and wxT.

GetFormatWildcard() [12/22]

wxString CGBFlatFileLoadManager::GetFormatWildcard ( ) const

virtual

return file wildcard for the format (example - "*.txt;*.tab" )

Implements IFileLoadPanelClient.

Definition at line 77 of file gb_flatfile_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kGenBank, and wxT.

GetFormatWildcard() [13/22]

wxString CPhyLoader::GetFormatWildcard ( ) const

virtual

return file wildcard for the format (example - "*.txt;*.tab" )

Implements IFileLoadPanelClient.

Definition at line 63 of file phy_loader.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kTree, and wxT.

GetFormatWildcard() [14/22]

wxString CRMLoader::GetFormatWildcard ( ) const

virtual

return file wildcard for the format (example - "*.txt;*.tab" )

Implements IFileLoadPanelClient.

Definition at line 64 of file rm_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kTxt, and wxT.

GetFormatWildcard() [15/22]

wxString C5ColLoadManager::GetFormatWildcard ( ) const

virtual

return file wildcard for the format (example - "*.txt;*.tab" )

Implements IFileLoadPanelClient.

Definition at line 62 of file 5col_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::k5Column, CFileExtensions::kAllFiles, and wxT.

GetFormatWildcard() [16/22]

wxString CAgpLoader::GetFormatWildcard ( ) const

virtual

return file wildcard for the format (example - "*.txt;*.tab" )

Implements IFileLoadPanelClient.

Definition at line 69 of file agp_loader.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAGP, CFileExtensions::kAllFiles, and wxT.

GetFormatWildcard() [17/22]

wxString CBedLoadManager::GetFormatWildcard ( ) const

virtual

return file wildcard for the format (example - "*.txt;*.tab" )

Implements IFileLoadPanelClient.

Definition at line 70 of file bed_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kBED, and wxT.

GetFormatWildcard() [18/22]

wxString CColumnarVCFLoaderManager::GetFormatWildcard ( ) const

virtual

return file wildcard for the format (example - "*.txt;*.tab" )

Implements IFileLoadPanelClient.

Definition at line 150 of file columnar_vcf_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kVCF, and wxT.

GetFormatWildcard() [19/22]

wxString CFASTAFormatLoadManager::GetFormatWildcard ( ) const

virtual

return file wildcard for the format (example - "*.txt;*.tab" )

Implements IFileLoadPanelClient.

Definition at line 83 of file fasta_format_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kFASTA, and wxT.

GetFormatWildcard() [20/22]

wxString CGffLoadManager::GetFormatWildcard ( ) const

virtual

return file wildcard for the format (example - "*.txt;*.tab" )

Implements IFileLoadPanelClient.

Definition at line 72 of file gff_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kGFF, CFileExtensions::kGTF, and wxT.

GetFormatWildcard() [21/22]

wxString CVCFLoaderManager::GetFormatWildcard ( ) const

virtual

return file wildcard for the format (example - "*.txt;*.tab" )

Implements IFileLoadPanelClient.

Definition at line 71 of file vcf_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kVCF, and wxT.

GetFormatWildcard() [22/22]

wxString CWigLoadManager::GetFormatWildcard ( ) const

virtual

return file wildcard for the format (example - "*.txt;*.tab" )

Implements IFileLoadPanelClient.

Definition at line 70 of file wig_load_manager.cpp.

References CFileExtensions::GetDialogFilter(), CFileExtensions::kAllFiles, CFileExtensions::kWIG, and wxT.

GetGencode()

string COrfSearchQuery::GetGencode ( )

inline

Definition at line 104 of file orf_search_tool.hpp.

References COrfSearchQuery::m_Gencode.

Referenced by COrfSearchJob::x_DoSearch().

GetGenomicAccessions()

const vector<string>& CGenBankLoadOptionPanel::GetGenomicAccessions ( ) const

inline

Definition at line 156 of file gb_load_option_panel.hpp.

References CGenBankLoadOptionPanel::m_GenomicAccessions.

Referenced by CGBLoadWizard::GetExecuteUnit(), and CGenBankUILoadManager::GetTask().

GetIconResource() [1/5]

wxIcon CCleanupPanel::GetIconResource

(

const wxString &

name

)

Retrieves icon resources.

Get icon resources

Definition at line 183 of file cleanup_panel.cpp.

GetIconResource() [2/5]

wxIcon CFASTAFormatParamsPanel::GetIconResource

(

const wxString &

name

)

Retrieves icon resources.

Definition at line 185 of file fasta_format_params_panel.cpp.

GetIconResource() [3/5]

wxIcon CGenBankLoadOptionPanel::GetIconResource

(

const wxString &

name

)

Retrieves icon resources.

Definition at line 590 of file gb_load_option_panel.cpp.

GetIconResource() [4/5]

wxIcon CGffParamsPanel::GetIconResource

(

const wxString &

name

)

Retrieves icon resources.

Get icon resources

Definition at line 250 of file gff_params_panel.cpp.

GetIconResource() [5/5]

wxIcon CResolveIdDlg::GetIconResource

(

const wxString &

name

)

Retrieves icon resources.

Get icon resources

Definition at line 421 of file resolve_id_dlg.cpp.

GetIds() [1/2]

string CComponentSearchQuery::GetIds ( void  ) const

inline

Definition at line 91 of file component_search_tool.hpp.

References CComponentSearchQuery::m_Ids.

Referenced by CComponentSearchJob::CComponentSearchJob(), CComponentSearchQuery::ToString(), CComponentSearchJob::x_DoSearch(), and CComponentSearchJob::x_ValidateParams().

GetIds() [2/2]

string CVcfSearchQuery::GetIds ( void  ) const

inline

Definition at line 93 of file vcf_search_tool.hpp.

References CVcfSearchQuery::m_Ids.

Referenced by CVcfSearchJob::CVcfSearchJob(), CVcfSearchQuery::ToString(), CVcfSearchJob::x_DoSearch(), and CVcfSearchJob::x_ValidateParams().

GetIgnoreGaps()

bool CFastaLoadParams::GetIgnoreGaps ( ) const

inline

Definition at line 83 of file fasta_load_params.hpp.

References CFastaLoadParams::m_IgnoreGaps.

Referenced by s_GetFlags().

GetInput()

string CGenBankLoadOptionPanel::GetInput

(

)

const

Definition at line 193 of file gb_load_option_panel.cpp.

References CGenBankLoadOptionPanel::m_AccInput, and ToStdString().

Referenced by CGenBankLoadOptionPanel::OnRecentAccClicked(), and CGenBankLoadOptionPanel::SaveSettings().

GetLabel() [1/11]

string CGBFlatFileLoadManager::GetLabel ( void  ) const

virtual

Implements IFileLoadPanelClient.

Definition at line 72 of file gb_flatfile_load_manager.cpp.

References CUIObject::GetLabel(), and CGBFlatFileLoadManager::m_Descr.

GetLabel() [2/11]

string CPhyLoader::GetLabel ( void  ) const

virtual

Implements IFileLoadPanelClient.

Definition at line 58 of file phy_loader.cpp.

References CUIObject::GetLabel(), and CPhyLoader::m_Descr.

GetLabel() [3/11]

string CRMLoader::GetLabel ( void  ) const

virtual

Implements IFileLoadPanelClient.

Definition at line 59 of file rm_load_manager.cpp.

References CUIObject::GetLabel(), and CRMLoader::m_Descr.

GetLabel() [4/11]

string C5ColLoadManager::GetLabel ( void  ) const

virtual

Implements IFileLoadPanelClient.

Definition at line 57 of file 5col_load_manager.cpp.

References CUIObject::GetLabel(), and C5ColLoadManager::m_Descr.

GetLabel() [5/11]

string CAgpLoader::GetLabel ( void  ) const

virtual

Implements IFileLoadPanelClient.

Definition at line 64 of file agp_loader.cpp.

References CUIObject::GetLabel(), and CAgpLoader::m_Descr.

GetLabel() [6/11]

string CBedLoadManager::GetLabel ( void  ) const

virtual

Implements IFileLoadPanelClient.

Definition at line 65 of file bed_load_manager.cpp.

References CUIObject::GetLabel(), and CBedLoadManager::m_Descr.

GetLabel() [7/11]

string CColumnarVCFLoaderManager::GetLabel ( void  ) const

virtual

Implements IFileLoadPanelClient.

Definition at line 145 of file columnar_vcf_load_manager.cpp.

References CUIObject::GetLabel(), and CColumnarVCFLoaderManager::m_Descr.

GetLabel() [8/11]

string CFASTAFormatLoadManager::GetLabel ( void  ) const

virtual

Implements IFileLoadPanelClient.

Definition at line 78 of file fasta_format_load_manager.cpp.

References CUIObject::GetLabel(), and CFASTAFormatLoadManager::m_Descr.

GetLabel() [9/11]

string CGffLoadManager::GetLabel ( void  ) const

virtual

Implements IFileLoadPanelClient.

Definition at line 67 of file gff_load_manager.cpp.

References CUIObject::GetLabel(), and CGffLoadManager::m_Descr.

GetLabel() [10/11]

string CVCFLoaderManager::GetLabel ( void  ) const

virtual

Implements IFileLoadPanelClient.

Definition at line 66 of file vcf_load_manager.cpp.

References CUIObject::GetLabel(), and CVCFLoaderManager::m_Descr.

GetLabel() [11/11]

string CWigLoadManager::GetLabel ( void  ) const

virtual

Implements IFileLoadPanelClient.

Definition at line 65 of file wig_load_manager.cpp.

References CUIObject::GetLabel(), and CWigLoadManager::m_Descr.

GetLoadManager()

IUIToolManager * CGenBankUIDataSource::GetLoadManager ( )

virtual

Implements IUIDataSource.

Definition at line 385 of file gb_ui_data_source.cpp.

GetLowercaseOption()

int CFastaLoadParams::GetLowercaseOption ( ) const

inline

Definition at line 86 of file fasta_load_params.hpp.

References CFastaLoadParams::m_LowercaseOption.

Referenced by CFastaObjectLoader::LoadFromStream().

GetMainObject() [1/3]

void CSeqTextView::GetMainObject ( TConstScopedObjects &  objects ) const

virtual

Adds the main data objects represented by the client to "objects".

Implementation shall not clear the container as it can be used for accumulating objects.

Reimplemented from CProjectView.

Definition at line 206 of file seq_text_view.cpp.

References CSeqTextPanel::GetDataSource(), CSeqTextDataSource::GetLoc(), CSeqTextView::m_Window, CProjectViewBase::x_GetScope(), and CProjectViewBase::x_HasProject().

GetMainObject() [2/3]

void CSequinDesktopView::GetMainObject ( TConstScopedObjects &  objects ) const

virtual

Adds the main data objects represented by the client to "objects".

Implementation shall not clear the container as it can be used for accumulating objects.

Reimplemented from CProjectView.

Definition at line 227 of file sequin_desktop_view.cpp.

References CSeqDesktopPanel::GetMainObjects(), CSequinDesktopView::m_Window, and CProjectViewBase::x_HasProject().

Referenced by CSequinDesktopView::x_OnSingleMouseClick().

GetMainObject() [3/3]

void CTextView::GetMainObject ( TConstScopedObjects &  objects ) const

virtual

Adds the main data objects represented by the client to "objects".

Implementation shall not clear the container as it can be used for accumulating objects.

Reimplemented from CProjectView.

Definition at line 264 of file text_view.cpp.

References CTextPanel::GetMainObjects(), CTextView::m_Window, and CProjectViewBase::x_HasProject().

GetMakeDelta()

bool CFastaLoadParams::GetMakeDelta ( ) const

inline

Definition at line 89 of file fasta_load_params.hpp.

References CFastaLoadParams::m_MakeDelta.

Referenced by s_GetFlags().

GetMapAssembly()

CMapAssemblyParams CGffLoadParams::GetMapAssembly ( ) const

inline

Definition at line 88 of file gff_load_params.hpp.

References CGffLoadParams::m_MapAssembly.

Referenced by CGffObjectLoader::Execute().

GetMenu() [1/4]

const wxMenu * CViewGraphic::GetMenu ( )

virtual

returns a menu (must be deleted by the caller) menu injections should follow a separator named "Contribs"

Reimplemented from CProjectViewBase.

Definition at line 104 of file view_graphic.cpp.

References NULL.

GetMenu() [2/4]

const wxMenu * CSequinDesktopView::GetMenu ( )

virtual

returns a menu (must be deleted by the caller) menu injections should follow a separator named "Contribs"

Reimplemented from CProjectViewBase.

Definition at line 110 of file sequin_desktop_view.cpp.

GetMenu() [3/4]

const wxMenu * CTextView::GetMenu ( void  )

virtual

returns a menu (must be deleted by the caller) menu injections should follow a separator named "Contribs"

Reimplemented from CProjectViewBase.

Definition at line 107 of file text_view.cpp.

References CTextPanel::GetMenuContributor(), and CTextView::m_Window.

GetMenu() [4/4]

IExplorerItemCmdContributor::TContribution CGenBankUIDataSource::GetMenu ( wxTreeCtrl &  treeCtrl, PT::TItems &  items  )

virtual

for the given set of items returns a contribution

Implements IExplorerItemCmdContributor.

Definition at line 142 of file gb_ui_data_source.cpp.

References CUICommandRegistry::AppendMenuItem(), eCmdLoadFromGenBank, PT::eDataSource, PT::TPTItem< TData, Type >::GetData(), CUICommandRegistry::GetInstance(), CRef< C, Locker >::GetPointer(), PT::CItem::GetType(), CGenBankUIDataSource::m_SrvLocator, NULL, and wxT.

GetMinGC()

string CCpgSearchQuery::GetMinGC ( )

inline

Definition at line 107 of file cpg_search_tool.hpp.

References CCpgSearchQuery::m_MinGC.

Referenced by CCpgSearchJob::x_DoSearch().

GetMinLenOfIsland()

string CCpgSearchQuery::GetMinLenOfIsland ( )

inline

Definition at line 106 of file cpg_search_tool.hpp.

References CCpgSearchQuery::m_MinLenOfIsland.

Referenced by CCpgSearchJob::x_DoSearch().

GetMinPairs()

string COrfSearchQuery::GetMinPairs ( )

inline

Definition at line 106 of file orf_search_tool.hpp.

References COrfSearchQuery::m_MinPairs.

Referenced by COrfSearchJob::x_DoSearch().

GetMinPercentage()

string CCpgSearchQuery::GetMinPercentage ( )

inline

Definition at line 108 of file cpg_search_tool.hpp.

References CCpgSearchQuery::m_MinPercentage.

Referenced by CCpgSearchJob::x_DoSearch().

GetName() [1/8]

string CSNPSearchTool::GetName ( ) const

virtual

returns unique name of the method that is used in UI to identify it

Implements CSearchToolBase.

Definition at line 101 of file snp_search_tool.cpp.

GetName() [2/8]

string CComponentSearchTool::GetName ( ) const

virtual

returns unique name of the method that is used in UI to identify it

Implements CSearchToolBase.

Definition at line 73 of file component_search_tool.cpp.

GetName() [3/8]

string CCpgSearchTool::GetName ( ) const

virtual

returns unique name of the method that is used in UI to identify it

Implements CSearchToolBase.

Definition at line 194 of file cpg_search_tool.cpp.

GetName() [4/8]

string CEntrezSearchTool::GetName ( ) const

virtual

returns unique name of the method that is used in UI to identify it

Implements CSearchToolBase.

Definition at line 96 of file entrez_search_tool.cpp.

GetName() [5/8]

string CFeatureSearchTool::GetName ( ) const

virtual

returns unique name of the method that is used in UI to identify it

Implements CSearchToolBase.

Definition at line 78 of file feature_search_tool.cpp.

GetName() [6/8]

string COrfSearchTool::GetName ( ) const

virtual

returns unique name of the method that is used in UI to identify it

Implements CSearchToolBase.

Definition at line 172 of file orf_search_tool.cpp.

GetName() [7/8]

string CSequenceSearchTool::GetName ( ) const

virtual

returns unique name of the method that is used in UI to identify it

Implements CSearchToolBase.

Definition at line 119 of file sequence_search_tool.cpp.

GetName() [8/8]

string CVcfSearchTool::GetName ( ) const

virtual

returns unique name of the method that is used in UI to identify it

Implements CSearchToolBase.

Definition at line 74 of file vcf_search_tool.cpp.

GetNameFeatSet()

wxString CGffLoadParams::GetNameFeatSet ( ) const

inline

Definition at line 91 of file gff_load_params.hpp.

References CGffLoadParams::m_NameFeatSet.

Referenced by CGffObjectLoader::Execute().

GetNAs()

const vector<string>& CGenBankLoadOptionPanel::GetNAs ( ) const

inline

Definition at line 155 of file gb_load_option_panel.hpp.

References CGenBankLoadOptionPanel::m_NAs.

Referenced by CGBLoadWizard::GetExecuteUnit(), and CGenBankUILoadManager::GetTask().

GetNonAsnData()

virtual INonAsnTrackData* CViewGraphic::GetNonAsnData ( )

inlinevirtual

Reimplemented from ISeqLocSearchContext.

Definition at line 130 of file view_graphic.hpp.

References CRef< C, Locker >::GetPointer(), and CViewGraphic::m_NonAsnTrackData.

GetNoSplit()

bool CFastaLoadParams::GetNoSplit ( ) const

inline

Definition at line 92 of file fasta_load_params.hpp.

References CFastaLoadParams::m_NoSplit.

Referenced by s_GetFlags().

GetObjects() [1/14]

IObjectLoader::TObjects & C5ColObjectLoader::GetObjects ( )

virtual

Implements IObjectLoader.

Definition at line 56 of file 5col_object_loader.cpp.

References C5ColObjectLoader::m_Objects.

GetObjects() [2/14]

IObjectLoader::TObjects & CAgpObjectLoader::GetObjects ( )

virtual

Implements IObjectLoader.

Definition at line 56 of file agp_object_loader.cpp.

References CAgpObjectLoader::m_Objects.

GetObjects() [3/14]

IObjectLoader::TObjects & CAssemblyObjectLoader::GetObjects ( )

virtual

Implements IObjectLoader.

Definition at line 65 of file assembly_object_loader.cpp.

References CAssemblyObjectLoader::m_Objects.

GetObjects() [4/14]

IObjectLoader::TObjects & CBedObjectLoader::GetObjects ( )

virtual

Implements IObjectLoader.

Definition at line 59 of file bed_object_loader.cpp.

References CBedObjectLoader::m_Objects.

GetObjects() [5/14]

IObjectLoader::TObjects & CChainLoader::GetObjects ( )

virtual

Implements IObjectLoader.

Definition at line 39 of file chain_loader.cpp.

References CChainLoader::m_Loaders, and CChainLoader::m_Objects.

GetObjects() [6/14]

IObjectLoader::TObjects & CGBFlatFileObjectLoader::GetObjects ( )

virtual

Implements IObjectLoader.

Definition at line 61 of file gb_flatfile_object_loader.cpp.

References CGBFlatFileObjectLoader::m_Objects.

GetObjects() [7/14]

IObjectLoader::TObjects & CGBObjectLoader::GetObjects ( )

virtual

Implements IObjectLoader.

Definition at line 52 of file gb_object_loader.cpp.

References CGBObjectLoader::m_Objects.

GetObjects() [8/14]

IObjectLoader::TObjects & CGffObjectLoader::GetObjects ( )

virtual

Implements IObjectLoader.

Definition at line 61 of file gff_object_loader.cpp.

References CGffObjectLoader::m_Objects.

GetObjects() [9/14]

IObjectLoader::TObjects & CPhyObjectLoader::GetObjects ( )

virtual

Implements IObjectLoader.

Definition at line 56 of file phy_object_loader.cpp.

References CPhyObjectLoader::m_Objects.

GetObjects() [10/14]

IObjectLoader::TObjects & CPslObjectLoader::GetObjects ( )

virtual

Implements IObjectLoader.

Definition at line 56 of file psl_object_loader.cpp.

References CPslObjectLoader::m_Objects.

GetObjects() [11/14]

IObjectLoader::TObjects & CVcfObjectLoader::GetObjects ( )

virtual

Implements IObjectLoader.

Definition at line 56 of file vcf_object_loader.cpp.

References CVcfObjectLoader::m_Objects.

GetObjects() [12/14]

IObjectLoader::TObjects & CWigObjectLoader::GetObjects ( )

virtual

Implements IObjectLoader.

Definition at line 79 of file wig_object_loader.cpp.

References CWigObjectLoader::m_Objects.

GetObjects() [13/14]

const TConstScopedObjects& CCleanupParams::GetObjects ( ) const

inline

Definition at line 81 of file cleanup_params.hpp.

References CCleanupParams::m_Objects.

Referenced by CCleanupJob::x_CreateProjectItems().

GetObjects() [14/14]

const TConstScopedObjects& CSrcEditParams::GetObjects ( ) const

inline

Definition at line 81 of file srcedit_params.hpp.

References CSrcEditParams::m_Objects.

GetOptionsPage() [1/8]

virtual IWizardPage* CGBFlatFileLoadManager::GetOptionsPage ( )

inlinevirtual

Returns page for tool options (long wizard path via "Options" button)

Reimplemented from IToolWizard.

Definition at line 89 of file gb_flatfile_load_manager.hpp.

References CGBFlatFileLoadManager::m_OptionsPage.

GetOptionsPage() [2/8]

virtual IWizardPage* CAgpLoader::GetOptionsPage ( )

inlinevirtual

Returns page for tool options (long wizard path via "Options" button)

Reimplemented from IToolWizard.

Definition at line 94 of file agp_loader.hpp.

References CAgpLoader::m_OptionsPage.

GetOptionsPage() [3/8]

virtual IWizardPage* CBedLoadManager::GetOptionsPage ( )

inlinevirtual

Returns page for tool options (long wizard path via "Options" button)

Reimplemented from IToolWizard.

Definition at line 94 of file bed_load_manager.hpp.

References CBedLoadManager::m_OptionsPage.

GetOptionsPage() [4/8]

virtual IWizardPage* CColumnarVCFLoaderManager::GetOptionsPage ( )

inlinevirtual

Returns page for tool options (long wizard path via "Options" button)

Reimplemented from IToolWizard.

Definition at line 98 of file columnar_vcf_load_manager.hpp.

GetOptionsPage() [5/8]

virtual IWizardPage* CFASTAFormatLoadManager::GetOptionsPage ( )

inlinevirtual

Returns page for tool options (long wizard path via "Options" button)

Reimplemented from IToolWizard.

Definition at line 93 of file fasta_format_load_manager.hpp.

References CFASTAFormatLoadManager::m_OptionsPage.

GetOptionsPage() [6/8]

virtual IWizardPage* CGffLoadManager::GetOptionsPage ( )

inlinevirtual

Returns page for tool options (long wizard path via "Options" button)

Reimplemented from IToolWizard.

Definition at line 97 of file gff_load_manager.hpp.

References CGffLoadManager::m_OptionsPage.

GetOptionsPage() [7/8]

virtual IWizardPage* CVCFLoaderManager::GetOptionsPage ( )

inlinevirtual

Returns page for tool options (long wizard path via "Options" button)

Reimplemented from IToolWizard.

Definition at line 92 of file vcf_load_manager.hpp.

References CVCFLoaderManager::m_OptionsPage.

GetOptionsPage() [8/8]

virtual IWizardPage* CWigLoadManager::GetOptionsPage ( )

inlinevirtual

Returns page for tool options (long wizard path via "Options" button)

Reimplemented from IToolWizard.

Definition at line 94 of file wig_load_manager.hpp.

References CWigLoadManager::m_OptionsPage.

GetPanel() [1/7]

wxPanel * CGBFlatFileLoadManager::CPage::GetPanel ( )

virtual

Implements IWizardPage.

Definition at line 43 of file gb_flatfile_load_manager.cpp.

References CGBFlatFileLoadManager::CPage::m_Manager, and CGBFlatFileLoadManager::x_GetParamsPanel().

GetPanel() [2/7]

wxPanel * CAgpLoader::CPage::GetPanel ( )

virtual

Implements IWizardPage.

Definition at line 42 of file agp_loader.cpp.

References CAgpLoader::CPage::m_Manager, and CAgpLoader::x_GetParamsPanel().

GetPanel() [3/7]

wxPanel * CBedLoadManager::CPage::GetPanel ( )

virtual

Implements IWizardPage.

Definition at line 43 of file bed_load_manager.cpp.

References CBedLoadManager::CPage::m_Manager, and CBedLoadManager::x_GetParamsPanel().

GetPanel() [4/7]

wxPanel * CFASTAFormatLoadManager::CPage::GetPanel ( )

virtual

Implements IWizardPage.

Definition at line 44 of file fasta_format_load_manager.cpp.

References CFASTAFormatLoadManager::CPage::m_Manager, and CFASTAFormatLoadManager::x_GetParamsPanel().

GetPanel() [5/7]

wxPanel * CGffLoadManager::CPage::GetPanel ( )

virtual

Implements IWizardPage.

Definition at line 44 of file gff_load_manager.cpp.

References CGffLoadManager::CPage::m_Manager, and CGffLoadManager::x_GetParamsPanel().

GetPanel() [6/7]

wxPanel * CVCFLoaderManager::CPage::GetPanel ( )

virtual

Implements IWizardPage.

Definition at line 44 of file vcf_load_manager.cpp.

References CVCFLoaderManager::CPage::m_Manager, and CVCFLoaderManager::x_GetParamsPanel().

GetPanel() [7/7]

wxPanel * CWigLoadManager::CPage::GetPanel ( )

virtual

Implements IWizardPage.

Definition at line 43 of file wig_load_manager.cpp.

References CWigLoadManager::CPage::m_Manager, and CWigLoadManager::x_GetParamsPanel().

GetParseSeqIds()

int CGffLoadParams::GetParseSeqIds ( ) const

inline

Definition at line 94 of file gff_load_params.hpp.

References CGffLoadParams::m_ParseSeqIds.

Referenced by CGffObjectLoader::Execute().

GetPattern() [1/2]

string CFeatureSearchQuery::GetPattern ( void  )

inline

Definition at line 108 of file feature_search_tool.hpp.

References CFeatureSearchQuery::m_Pattern.

GetPattern() [2/2]

string CSequenceSearchQuery::GetPattern ( void  )

inline

Definition at line 106 of file sequence_search_tool.hpp.

References CSequenceSearchQuery::m_Pattern.

Referenced by CSequenceSearchJob::CSequenceSearchJob(), CSequenceSearchJob::x_DoSearch(), and CSequenceSearchJob::x_ValidateParams().

GetPatternFile()

string CSequenceSearchQuery::GetPatternFile ( )

inline

Definition at line 107 of file sequence_search_tool.hpp.

References CSequenceSearchQuery::m_PatternFile.

Referenced by CSequenceSearchJob::x_DoSearch().

GetPatternType() [1/2]

TPatternType CFeatureSearchQuery::GetPatternType ( )

inline

Definition at line 109 of file feature_search_tool.hpp.

References CFeatureSearchQuery::m_PatternType.

GetPatternType() [2/2]

TPatternType CSequenceSearchQuery::GetPatternType ( )

inline

Definition at line 108 of file sequence_search_tool.hpp.

References CSequenceSearchQuery::m_PatternType.

Referenced by CSequenceSearchJob::x_DoSearch().

GetProjectViewTypeDescriptor() [1/5]

const CProjectViewTypeDescriptor & CSeqTextViewFactory::GetProjectViewTypeDescriptor ( ) const

virtual

returns a Descriptor for the View Type supported by the Factory

Implements IProjectViewFactory.

Definition at line 277 of file seq_text_view.cpp.

References s_SeqTextViewTypeDescr.

GetProjectViewTypeDescriptor() [2/5]

const CProjectViewTypeDescriptor & CFeatTableViewFactory::GetProjectViewTypeDescriptor ( ) const

virtual

returns a Descriptor for the View Type supported by the Factory

Implements IProjectViewFactory.

Definition at line 587 of file view_feattable.cpp.

References s_FeatTableViewTypeDescr.

GetProjectViewTypeDescriptor() [3/5]

const CProjectViewTypeDescriptor & CViewGraphicFactory::GetProjectViewTypeDescriptor ( ) const

virtual

returns a Descriptor for the View Type supported by the Factory

Implements IProjectViewFactory.

Definition at line 726 of file view_graphic.cpp.

References s_ViewGraphicTypeDescr.

GetProjectViewTypeDescriptor() [4/5]

const CProjectViewTypeDescriptor & CSequinDesktopViewFactory::GetProjectViewTypeDescriptor ( ) const

virtual

returns a Descriptor for the View Type supported by the Factory

Implements IProjectViewFactory.

Definition at line 391 of file sequin_desktop_view.cpp.

GetProjectViewTypeDescriptor() [5/5]

const CProjectViewTypeDescriptor & CTextViewFactory::GetProjectViewTypeDescriptor ( ) const

virtual

returns a Descriptor for the View Type supported by the Factory

Implements IProjectViewFactory.

Definition at line 414 of file text_view.cpp.

GetReadFirst()

bool CFastaLoadParams::GetReadFirst ( ) const

inline

Definition at line 95 of file fasta_load_params.hpp.

References CFastaLoadParams::m_ReadFirst.

Referenced by s_GetFlags().

GetSearchLoc()

CRef< CSeq_loc > CViewGraphic::GetSearchLoc ( )

virtual

Implements ISeqLocSearchContext.

Definition at line 658 of file view_graphic.cpp.

References CSeqUtils::CreateSeq_loc(), CSeqGraphicWidget::GetRangeSelection(), CGraphicPanel::GetWidget(), CViewGraphic::m_GraphicPanel, CViewGraphic::m_SeqId, CSeq_loc::SetWhole(), and CRangeCollection< Position >::size().

GetSearchScope()

CRef< CScope > CViewGraphic::GetSearchScope ( )

virtual

Implements ISeqLocSearchContext.

Definition at line 679 of file view_graphic.cpp.

References CProjectViewBase::m_Scope.

GetSelection() [1/10]

void CSeqTextView::GetSelection ( CSelectionEvent &  evt ) const

virtual

get selection for broadcasting

Reimplemented from CProjectView.

Definition at line 168 of file seq_text_view.cpp.

References CSelectionEvent::AddRangeSelection(), CSeqTextPanel::GetDataSource(), CSeqTextDataSource::GetId(), CSeqTextWidget::GetSelection(), CSeqTextPanel::GetWidget(), CSeqTextView::m_Window, and CProjectViewBase::x_HasProject().

GetSelection() [2/10]

void CFeatTableView::GetSelection ( CSelectionEvent &  evt ) const

virtual

get selection for broadcasting

Reimplemented from CProjectView.

Definition at line 481 of file view_feattable.cpp.

References CSelectionEvent::AddObjectSelection(), CFeatTableWidget::GetSelection(), CFeatTableView::m_FTblWidget, and CProjectViewBase::x_HasProject().

GetSelection() [3/10]

void CViewGraphic::GetSelection ( CSelectionEvent &  evt ) const

virtual

get selection for broadcasting

Reimplemented from CProjectView.

Definition at line 435 of file view_graphic.cpp.

References CSelectionEvent::AddObjectSelection(), CSelectionEvent::AddRangeSelection(), CSeqGraphicWidget::GetObjectSelection(), CSeqGraphicWidget::GetRangeSelection(), CGraphicPanel::GetWidget(), CViewGraphic::m_GraphicPanel, CViewGraphic::m_SeqId, and CProjectViewBase::x_HasProject().

GetSelection() [4/10]

void CSequinDesktopView::GetSelection ( CSelectionEvent &  evt ) const

virtual

get selection for broadcasting

Reimplemented from CProjectView.

Definition at line 205 of file sequin_desktop_view.cpp.

References CSelectionEvent::AddObjectSelection(), CSeqDesktopPanel::GetSelectedObjects(), CSequinDesktopView::m_Window, and CProjectViewBase::x_HasProject().

Referenced by CSequinDesktopView::x_OnSingleMouseClick().

GetSelection() [5/10]

void CTextView::GetSelection ( CSelectionEvent &  evt ) const

virtual

get selection for broadcasting

Reimplemented from CProjectView.

Definition at line 242 of file text_view.cpp.

References CSelectionEvent::AddObjectSelection(), CTextPanel::GetSelectedObjects(), CTextView::m_Window, and CProjectViewBase::x_HasProject().

GetSelection() [6/10]

void CSeqTextView::GetSelection ( TConstScopedObjects &  objects ) const

virtual

shall return data objects representing selected things, return one data object for every selected thing.

Implementation shall not clear the container as it can be used for accumulating objects.

Reimplemented from CProjectView.

Definition at line 181 of file seq_text_view.cpp.

References _ASSERT, CSeqUtils::CreateSeq_loc(), CRangeCollection< Position >::empty(), CSeqTextPanel::GetDataSource(), CSeqTextDataSource::GetId(), CSeqTextWidget::GetSelection(), CSeqTextPanel::GetWidget(), CSeqTextView::m_Window, CProjectViewBase::x_GetScope(), and CProjectViewBase::x_HasProject().

GetSelection() [7/10]

void CFeatTableView::GetSelection ( TConstScopedObjects &  objects ) const

virtual

shall return data objects representing selected things, return one data object for every selected thing.

Implementation shall not clear the container as it can be used for accumulating objects.

Reimplemented from CProjectView.

Definition at line 465 of file view_feattable.cpp.

References CFeatTableWidget::GetSelection(), ITERATE, CFeatTableView::m_FTblWidget, CProjectViewBase::x_GetScope(), and CProjectViewBase::x_HasProject().

GetSelection() [8/10]

void CViewGraphic::GetSelection ( TConstScopedObjects &  objects ) const

virtual

shall return data objects representing selected things, return one data object for every selected thing.

Implementation shall not clear the container as it can be used for accumulating objects.

Reimplemented from CProjectView.

Definition at line 383 of file view_graphic.cpp.

References CSeqUtils::CreateSeq_loc(), set< Key, Compare >::end(), CRelation::fConvert_NoExpensive, set< Key, Compare >::find(), CObjectConverter::FindRelations(), CSeq_id_Handle::GetHandle(), CSeqGraphicWidget::GetObjectSelection(), CSeqGraphicWidget::GetRangeSelection(), CGraphicPanel::GetWidget(), set< Key, Compare >::insert(), ITERATE, CViewGraphic::m_GraphicPanel, CViewGraphic::m_SeqId, NON_CONST_ITERATE, CRangeCollection< Position >::size(), CProjectViewBase::x_GetScope(), and CProjectViewBase::x_HasProject().

GetSelection() [9/10]

void CSequinDesktopView::GetSelection ( TConstScopedObjects &  objects ) const

virtual

shall return data objects representing selected things, return one data object for every selected thing.

Implementation shall not clear the container as it can be used for accumulating objects.

Reimplemented from CProjectView.

Definition at line 215 of file sequin_desktop_view.cpp.

References CSeqDesktopPanel::GetSelectedObjects(), ITERATE, CSequinDesktopView::m_Window, CProjectViewBase::x_GetScope(), and CProjectViewBase::x_HasProject().

GetSelection() [10/10]

void CTextView::GetSelection ( TConstScopedObjects &  objects ) const

virtual

shall return data objects representing selected things, return one data object for every selected thing.

Implementation shall not clear the container as it can be used for accumulating objects.

Reimplemented from CProjectView.

Definition at line 252 of file text_view.cpp.

References CTextPanel::GetSelectedObjects(), ITERATE, CTextView::m_Window, CProjectViewBase::x_GetScope(), and CProjectViewBase::x_HasProject().

GetSeqIds()

CGenBankLoadOptionPanel::TIdsVec & CGenBankLoadOptionPanel::GetSeqIds

(

void

)

Definition at line 555 of file gb_load_option_panel.cpp.

References CGenBankLoadOptionPanel::m_Ids.

Referenced by CGBLoadWizard::GetExecuteUnit(), and CGenBankUILoadManager::GetTask().

GetSeqType()

int CFastaLoadParams::GetSeqType ( ) const

inline

Definition at line 98 of file fasta_load_params.hpp.

References CFastaLoadParams::m_SeqType.

Referenced by s_GetFlags().

GetSizeOfSlidingWindow()

string CCpgSearchQuery::GetSizeOfSlidingWindow ( )

inline

Definition at line 105 of file cpg_search_tool.hpp.

References CCpgSearchQuery::m_SizeOfSlidingWindow.

Referenced by CCpgSearchJob::x_DoSearch().

GetSkipInvalid()

bool CFastaLoadParams::GetSkipInvalid ( ) const

inline

Definition at line 101 of file fasta_load_params.hpp.

References CFastaLoadParams::m_SkipInvalid.

Referenced by s_GetFlags().

GetStartOrf()

string COrfSearchQuery::GetStartOrf ( )

inline

Definition at line 105 of file orf_search_tool.hpp.

References COrfSearchQuery::m_StartOrf.

Referenced by COrfSearchJob::x_DoSearch().

GetTargetType() [1/2]

virtual string CSequinDesktopViewFactory::GetTargetType ( ) const

inlineprotectedvirtual

Definition at line 156 of file sequin_desktop_view.hpp.

GetTargetType() [2/2]

virtual string CTextViewFactory::GetTargetType ( ) const

inlineprotectedvirtual

Definition at line 170 of file text_view.hpp.

GetTask() [1/16]

IAppTask * CCleanupTool::GetTask ( )

virtual

Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work.

Reimplemented from CAlgoToolManagerBase.

Definition at line 109 of file cleanup_tool.cpp.

References IServiceLocator::GetServiceByType(), CAlgoToolManagerBase::m_SrvLocator, CRef< C, Locker >::Release(), and CCleanupTool::x_CreateLoadingJob().

GetTask() [2/16]

IAppTask * CGBFlatFileLoadManager::GetTask ( )

virtual

Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work.

Implements IUIToolManager.

Definition at line 177 of file gb_flatfile_load_manager.cpp.

GetTask() [3/16]

IAppTask * CGenBankUILoadManager::GetTask ( )

virtual

Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work.

Implements IUIToolManager.

Definition at line 573 of file gb_ui_data_source.cpp.

References CChainLoader::Add(), CGenBankLoadOptionPanel::GetGenomicAccessions(), CGenBankLoadOptionPanel::GetNAs(), CProjectSelectorPanel::GetParams(), CGenBankLoadOptionPanel::GetSeqIds(), IServiceLocator::GetServiceByType(), SProjectSelectorParams::m_CreateFolder, SProjectSelectorParams::m_FolderName, CGenBankUILoadManager::m_OptionPanel, CGenBankUILoadManager::m_ProjectParams, CGenBankUILoadManager::m_ProjectSelPanel, CGenBankUILoadManager::m_SrvLocator, CRef< C, Locker >::Reset(), CGenBankUILoadManager::SaveMruAccessions(), and SProjectSelectorParams::ToLoadingOptions().

GetTask() [4/16]

IAppTask * CMergeTool::GetTask ( )

virtual

Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work.

Reimplemented from CAlgoToolManagerBase.

Definition at line 110 of file merge_tool.cpp.

References IServiceLocator::GetServiceByType(), CAlgoToolManagerBase::m_SrvLocator, CRef< C, Locker >::Release(), and CMergeTool::x_CreateLoadingJob().

GetTask() [5/16]

IAppTask * CAutodefToolManager::GetTask ( )

virtual

Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work.

Reimplemented from CAlgoToolManagerBase.

Definition at line 197 of file autodef_tool_manager.cpp.

References CRef< C, Locker >::Release(), and CAutodefToolManager::x_CreateEditJob().

GetTask() [6/16]

IAppTask * CSrcEditTool::GetTask ( )

virtual

Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work.

Reimplemented from CAlgoToolManagerBase.

Definition at line 118 of file srcedit_tool.cpp.

References IServiceLocator::GetServiceByType(), CAlgoToolManagerBase::m_SrvLocator, CRef< C, Locker >::Release(), CSelectProjectOptions::Set_CreateNewProject(), and CSrcEditTool::x_CreateLoadingJob().

GetTask() [7/16]

IAppTask * CPhyLoader::GetTask ( )

virtual

Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work.

Implements IUIToolManager.

Definition at line 148 of file phy_loader.cpp.

GetTask() [8/16]

IAppTask * CRMLoader::GetTask ( )

virtual

Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work.

Implements IUIToolManager.

Definition at line 135 of file rm_load_manager.cpp.

GetTask() [9/16]

IAppTask * C5ColLoadManager::GetTask ( )

virtual

Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work.

Implements IUIToolManager.

Definition at line 129 of file 5col_load_manager.cpp.

GetTask() [10/16]

IAppTask * CAgpLoader::GetTask ( )

virtual

Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work.

Implements IUIToolManager.

Definition at line 170 of file agp_loader.cpp.

GetTask() [11/16]

IAppTask * CBedLoadManager::GetTask ( )

virtual

Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work.

Implements IUIToolManager.

Definition at line 170 of file bed_load_manager.cpp.

GetTask() [12/16]

IAppTask * CColumnarVCFLoaderManager::GetTask ( )

virtual

Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work.

Implements IUIToolManager.

Definition at line 389 of file columnar_vcf_load_manager.cpp.

References CVcfColumnSelectionPanel::AllAreChecked(), CVcfSampleSelectionPanel::AllAreChecked(), CVcfColumnSelectionPanel::GetSelectedInfoFields(), CVcfRefSequencesPanel::GetSelectedReferenceSeqIds(), CVcfSampleSelectionPanel::GetSelectedSamples(), IServiceLocator::GetServiceByType(), CVcfRefSequencesPanel::ImportAll(), CColumnarVCFLoaderManager::m_ColumnsPanel, CColumnarVCFLoaderManager::m_FileNames, CColumnarVCFLoaderManager::m_GenCollAssm, CColumnarVCFLoaderManager::m_RefSeqIds, CColumnarVCFLoaderManager::m_RefSequencesPanel, CColumnarVCFLoaderManager::m_SamplesPanel, and CColumnarVCFLoaderManager::m_SrvLocator.

GetTask() [13/16]

IAppTask * CFASTAFormatLoadManager::GetTask ( )

virtual

Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work.

Implements IUIToolManager.

Definition at line 184 of file fasta_format_load_manager.cpp.

GetTask() [14/16]

IAppTask * CGffLoadManager::GetTask ( )

virtual

Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work.

Implements IUIToolManager.

Definition at line 174 of file gff_load_manager.cpp.

GetTask() [15/16]

IAppTask * CVCFLoaderManager::GetTask ( )

virtual

Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work.

Implements IUIToolManager.

Definition at line 171 of file vcf_load_manager.cpp.

GetTask() [16/16]

IAppTask * CWigLoadManager::GetTask ( )

virtual

Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work.

Implements IUIToolManager.

Definition at line 172 of file wig_load_manager.cpp.

GetTerms() [1/2]

string CSNPSearchQuery::GetTerms ( ) const

inline

Definition at line 93 of file snp_search_tool.hpp.

References CSNPSearchQuery::m_Terms.

Referenced by CSNPSearchJob::CSNPSearchJob(), CSNPSearchJob::x_DoSearch(), and CSNPSearchJob::x_ValidateParams().

GetTerms() [2/2]

string CEntrezSearchQuery::GetTerms ( void  ) const

inline

Definition at line 97 of file entrez_search_tool.hpp.

References CEntrezSearchQuery::m_Terms.

Referenced by CEntrezSearchJob::CEntrezSearchJob(), CEntrezSearchJob::x_DoSearch(), and CEntrezSearchJob::x_ValidateParams().

GetType()

IUIDataSourceType & CGenBankUIDataSource::GetType ( void  ) const

virtual

Implements IUIDataSource.

Definition at line 178 of file gb_ui_data_source.cpp.

References CGenBankUIDataSource::m_Type.

GetTypeDescriptor() [1/5]

const CViewTypeDescriptor & CSeqTextView::GetTypeDescriptor ( ) const

virtual

return an object providing meta information about thei view type

Implements CProjectViewBase.

Definition at line 162 of file seq_text_view.cpp.

References s_SeqTextViewTypeDescr.

Referenced by CSeqTextView::InitView().

GetTypeDescriptor() [2/5]

const CViewTypeDescriptor & CFeatTableView::GetTypeDescriptor ( ) const

virtual

return an object providing meta information about thei view type

Implements CProjectViewBase.

Definition at line 280 of file view_feattable.cpp.

References s_FeatTableViewTypeDescr.

GetTypeDescriptor() [3/5]

const CViewTypeDescriptor & CViewGraphic::GetTypeDescriptor ( ) const

virtual

return an object providing meta information about thei view type

Implements CProjectViewBase.

Definition at line 377 of file view_graphic.cpp.

References s_ViewGraphicTypeDescr.

Referenced by CViewGraphic::InitView(), and CViewGraphic::SaveSettingsAtProject().

GetTypeDescriptor() [4/5]

const CViewTypeDescriptor & CSequinDesktopView::GetTypeDescriptor ( ) const

virtual

return an object providing meta information about thei view type

Implements CProjectViewBase.

Definition at line 199 of file sequin_desktop_view.cpp.

GetTypeDescriptor() [5/5]

const CViewTypeDescriptor & CTextView::GetTypeDescriptor ( ) const

virtual

return an object providing meta information about thei view type

Implements CProjectViewBase.

Definition at line 236 of file text_view.cpp.

GetVcfContexts()

const vector<ISeqLocSearchContext*>& CVcfSearchQuery::GetVcfContexts ( ) const

inline

Definition at line 91 of file vcf_search_tool.hpp.

References CVcfSearchQuery::m_VcfContexts.

Referenced by CVcfSearchJob::x_DoSearch().

GetVisibleRanges() [1/2]

void CFeatTableView::GetVisibleRanges ( CVisibleRange &  vrange ) const

virtual

populate a visible range event for broadcasting

Populate a visible range event prior to broadcasting.

Reimplemented from CProjectView.

Definition at line 508 of file view_feattable.cpp.

GetVisibleRanges() [2/2]

void CViewGraphic::GetVisibleRanges ( CVisibleRange &  vrange ) const

virtual

populate a visible range event for broadcasting

Populate a visible range event prior to broadcasting.

Reimplemented from CProjectView.

Definition at line 575 of file view_graphic.cpp.

References CVisibleRange::AddLocation(), CSeqGraphicWidget::GetVisibleSeqRange(), CGraphicPanel::GetWidget(), CViewGraphic::m_GraphicPanel, CViewGraphic::m_SeqId, compile_time_bits::range(), CSeq_loc::SetId(), and CSeq_loc::SetInt().

GetWidget() [1/8]

wxSizer * CSNPSearchForm::GetWidget ( wxWindow *  )

virtual

return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget)

Reimplemented from CSearchFormBase.

Definition at line 186 of file snp_search_tool.cpp.

References ID_TEXT, CSearchFormBase::m_Sizer, CSearchFormBase::m_Text, and wxT.

GetWidget() [2/8]

wxSizer * CComponentSearchForm::GetWidget ( wxWindow *  )

virtual

return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget)

Reimplemented from CSearchFormBase.

Definition at line 184 of file component_search_tool.cpp.

References ID_COMBOBOX, ID_TEXT, CComponentSearchForm::m_DbCombo, CSearchFormBase::m_Sizer, CSearchFormBase::m_Text, NULL, and wxT.

GetWidget() [3/8]

wxSizer * CCpgSearchForm::GetWidget ( wxWindow *  )

virtual

return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget)

Reimplemented from CSearchFormBase.

Definition at line 354 of file cpg_search_tool.cpp.

References ID_COMBOBOX, CCpgSearchForm::m_AdjMergeThreshold, CCpgSearchForm::m_AdjMergeThresholdCtl, CCpgSearchForm::m_DbCombo, CCpgSearchForm::m_MinGC, CCpgSearchForm::m_MinGCCtl, CCpgSearchForm::m_MinLenOfIsland, CCpgSearchForm::m_MinLenOfIslandCtl, CCpgSearchForm::m_MinPercentage, CCpgSearchForm::m_MinPercentageCtl, CCpgSearchForm::m_SizeOfSlidingWindow, CCpgSearchForm::m_SizeOfSlidingWindowCtl, CSearchFormBase::m_Sizer, NULL, ToWxString(), and wxT.

GetWidget() [4/8]

wxSizer * CEntrezSearchForm::GetWidget ( wxWindow *  )

virtual

return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget)

Reimplemented from CSearchFormBase.

Definition at line 195 of file entrez_search_tool.cpp.

References ID_COMBOBOX, ID_TEXT, CEntrezSearchForm::m_DbCombo, CSearchFormBase::m_Sizer, CSearchFormBase::m_Text, NULL, and wxT.

GetWidget() [5/8]

wxSizer * CFeatureSearchForm::GetWidget ( wxWindow *  )

virtual

return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget)

Reimplemented from CSearchFormBase.

Definition at line 256 of file feature_search_tool.cpp.

References ID_COMBOBOX, ID_HYPERLINKCTRL, ID_TEXT, CFeatureSearchForm::m_DbCombo, CFeatureSearchForm::m_HyperLink, CFeatureSearchForm::m_SearchPattern, CSearchFormBase::m_Sizer, CSearchFormBase::m_Text, CFeatureSearchForm::m_TypeCombo, NULL, ToWxString(), and wxT.

GetWidget() [6/8]

wxSizer * COrfSearchForm::GetWidget ( wxWindow *  )

virtual

return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget)

Reimplemented from CSearchFormBase.

Definition at line 326 of file orf_search_tool.cpp.

References CGenetic_code_table_Base::Get(), CGen_code_table::GetCodeTable(), ID_COMBOBOX, ID_COMBOBOX_UPDATE, ITERATE, COrfSearchForm::m_BasepairsText, COrfSearchForm::m_DbCombo, COrfSearchForm::m_Gencode, COrfSearchForm::m_GencodeCombo, COrfSearchForm::m_MinPairs, CSearchFormBase::m_Sizer, COrfSearchForm::m_StartOrf, COrfSearchForm::m_StartorfCombo, NULL, sAutoSelect, ToWxString(), and wxT.

GetWidget() [7/8]

wxSizer * CSequenceSearchForm::GetWidget ( wxWindow *  )

virtual

return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget)

Reimplemented from CSearchFormBase.

Definition at line 252 of file sequence_search_tool.cpp.

References ID_COMBOBOX, ID_COMBOBOX_UPDATE, ID_TEXT, ITERATE, CSequenceSearchForm::m_DbCombo, CSequenceSearchForm::m_FileList, CSequenceSearchForm::m_PatternCombo, CSequenceSearchForm::m_pPatternSizer, CSequenceSearchForm::m_pSearchSizer, CSequenceSearchForm::m_SearchPattern, CSearchFormBase::m_Sizer, CSearchFormBase::m_Text, CSequenceSearchForm::m_TypeCombo, NULL, ToWxString(), and wxT.

GetWidget() [8/8]

wxSizer * CVcfSearchForm::GetWidget ( wxWindow *  )

virtual

return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget)

Reimplemented from CSearchFormBase.

Definition at line 190 of file vcf_search_tool.cpp.

References ID_COMBOBOX, ID_TEXT, CVcfSearchForm::m_DbCombo, CSearchFormBase::m_Sizer, CSearchFormBase::m_Text, NULL, and wxT.

GetWindow() [1/5]

wxWindow * CSeqTextView::GetWindow ( )

virtual

returns a pointer to the wxWindow representing the client

Implements CProjectViewBase.

Definition at line 73 of file seq_text_view.cpp.

References _ASSERT, and CSeqTextView::m_Window.

GetWindow() [2/5]

wxWindow * CFeatTableView::GetWindow ( )

virtual

returns a pointer to the wxWindow representing the client

Implements CProjectViewBase.

Definition at line 157 of file view_feattable.cpp.

References _ASSERT, and CFeatTableView::m_Panel.

Referenced by CFeatTableView::DestroyViewWindow().

GetWindow() [3/5]

wxWindow * CViewGraphic::GetWindow ( )

virtual

returns a pointer to the wxWindow representing the client

Implements CProjectViewBase.

Definition at line 364 of file view_graphic.cpp.

References _ASSERT, and CViewGraphic::m_GraphicPanel.

GetWindow() [4/5]

wxWindow * CSequinDesktopView::GetWindow ( )

virtual

returns a pointer to the wxWindow representing the client

Implements CProjectViewBase.

Definition at line 92 of file sequin_desktop_view.cpp.

References _ASSERT, and CSequinDesktopView::m_Window.

GetWindow() [5/5]

wxWindow * CTextView::GetWindow ( )

virtual

returns a pointer to the wxWindow representing the client

Implements CProjectViewBase.

Definition at line 89 of file text_view.cpp.

References _ASSERT, and CTextView::m_Window.

Id() [1/11]

static string CGBFlatFileLoadManager::Id ( )

inlinestatic

Definition at line 117 of file gb_flatfile_load_manager.hpp.

Referenced by CGBFlatFileLoadManager::GetFileLoaderId().

Id() [2/11]

static string CPhyLoader::Id ( void  )

inlinestatic

Definition at line 116 of file phy_loader.hpp.

Referenced by CPhyLoader::GetFileLoaderId().

Id() [3/11]

static string CRMLoader::Id ( void  )

inlinestatic

Definition at line 106 of file rm_load_manager.hpp.

Referenced by CRMLoader::GetFileLoaderId().

Id() [4/11]

static string C5ColLoadManager::Id ( void  )

inlinestatic

Definition at line 118 of file 5col_load_manager.hpp.

Referenced by C5ColLoadManager::GetFileLoaderId().

Id() [5/11]

static string CAgpLoader::Id ( void  )

inlinestatic

Definition at line 122 of file agp_loader.hpp.

Referenced by CAgpLoader::GetFileLoaderId().

Id() [6/11]

static string CBedLoadManager::Id ( void  )

inlinestatic

Definition at line 122 of file bed_load_manager.hpp.

Referenced by CBedLoadManager::GetFileLoaderId().

Id() [7/11]

static string CColumnarVCFLoaderManager::Id ( void  )

inlinestatic

Definition at line 126 of file columnar_vcf_load_manager.hpp.

Referenced by CColumnarVCFLoaderManager::GetFileLoaderId().

Id() [8/11]

static string CFASTAFormatLoadManager::Id ( void  )

inlinestatic

Definition at line 121 of file fasta_format_load_manager.hpp.

Referenced by CFASTAFormatLoadManager::GetFileLoaderId().

Id() [9/11]

static string CGffLoadManager::Id ( void  )

inlinestatic

Definition at line 125 of file gff_load_manager.hpp.

Referenced by CGffLoadManager::GetFileLoaderId().

Id() [10/11]

static string CVCFLoaderManager::Id ( void  )

inlinestatic

Definition at line 120 of file vcf_load_manager.hpp.

Referenced by CVCFLoaderManager::GetFileLoaderId().

Id() [11/11]

static string CWigLoadManager::Id ( void  )

inlinestatic

Definition at line 122 of file wig_load_manager.hpp.

Referenced by CWigLoadManager::GetFileLoaderId().

Init() [1/18]

void CCleanupPanel::Init

(

void

)

Initialises member variables.

Member initialisation

Definition at line 117 of file cleanup_panel.cpp.

References CCleanupPanel::m_ObjectList, and NULL.

Referenced by CCleanupPanel::CCleanupPanel().

Init() [2/18]

void CCleanupParams::Init

(

void

)

Initialises member variables.

Member initialisation for CCleanupParams

Definition at line 106 of file cleanup_params.cpp.

References CCleanupParams::m_CleanupMode.

Referenced by CCleanupParams::CCleanupParams(), and CCleanupPanel::RestoreDefaults().

Init() [3/18]

void CSNPSearchForm::Init ( void  )

virtual

Reimplemented from IDMSearchForm.

Definition at line 170 of file snp_search_tool.cpp.

References IDMSearchForm::Init().

Init() [4/18]

void CSrcEditParams::Init

(

void

)

Initialises member variables.

Member initialisation for CSrcEditParams

Definition at line 104 of file srcedit_params.cpp.

Referenced by CSrcEditParams::CSrcEditParams(), and CSrcEditPanel::RestoreDefaults().

Init() [5/18]

void CFASTAFormatParamsPanel::Init

(

void

)

Definition at line 98 of file fasta_format_params_panel.cpp.

Referenced by CFASTAFormatParamsPanel::CFASTAFormatParamsPanel().

Init() [6/18]

void CFastaLoadParams::Init

(

void

)

Initialises member variables.

Member initialisation for CFastaLoadParams

Definition at line 119 of file fasta_load_params.cpp.

References CFastaLoadParams::m_ForceLocalIDs, CFastaLoadParams::m_IgnoreGaps, CFastaLoadParams::m_LowercaseOption, CFastaLoadParams::m_MakeDelta, CFastaLoadParams::m_NoSplit, CFastaLoadParams::m_ReadFirst, CFastaLoadParams::m_SeqType, and CFastaLoadParams::m_SkipInvalid.

Referenced by CFastaLoadParams::CFastaLoadParams().

Init() [7/18]

void CGBFlatFileObjectLoader::Init

(

void

)

Definition at line 71 of file gb_flatfile_object_loader.cpp.

References CObjectManager::GetInstance(), CGBFlatFileObjectLoader::m_Scope, and CRef< C, Locker >::Reset().

Referenced by CGBFlatFileObjectLoader::Execute().

Init() [8/18]

void CGenBankLoadOptionPanel::Init

(

void

)

Definition at line 112 of file gb_load_option_panel.cpp.

References CGenBankLoadOptionPanel::m_AccInput, CGenBankLoadOptionPanel::m_ErrNum, CGenBankLoadOptionPanel::m_MRUWindow, CGenBankLoadOptionPanel::m_TokensNum, and NULL.

Referenced by CGenBankLoadOptionPanel::CGenBankLoadOptionPanel().

Init() [9/18]

void CGffLoadParams::Init

(

void

)

Initialises member variables.

Member initialisation for CGffLoadParams

Definition at line 113 of file gff_load_params.cpp.

References CGffLoadParams::m_FileFormat, and CGffLoadParams::m_ParseSeqIds.

Referenced by CGffLoadParams::CGffLoadParams().

Init() [10/18]

void CGffParamsPanel::Init

(

void

)

Initialises member variables.

Member initialisation

Definition at line 133 of file gff_params_panel.cpp.

References CGffParamsPanel::m_AssemblyPanel, and NULL.

Referenced by CGffParamsPanel::CGffParamsPanel().

Init() [11/18]

void CComponentSearchForm::Init ( void  )

virtual

Reimplemented from IDMSearchForm.

Definition at line 155 of file component_search_tool.cpp.

References IDMSearchForm::Init().

Init() [12/18]

void CCpgSearchForm::Init ( void  )

virtual

Reimplemented from IDMSearchForm.

Definition at line 312 of file cpg_search_tool.cpp.

References IDMSearchForm::Init().

Init() [13/18]

void CEntrezSearchForm::Init ( void  )

virtual

Reimplemented from IDMSearchForm.

Definition at line 168 of file entrez_search_tool.cpp.

References CEntrezDB::GetDbNames(), IDMSearchForm::Init(), CEntrezSearchForm::m_CurrDbName, and CEntrezSearchForm::m_DbNames.

Init() [14/18]

void CFeatureSearchForm::Init ( void  )

virtual

Reimplemented from IDMSearchForm.

Definition at line 189 of file feature_search_tool.cpp.

References IDMSearchForm::Init().

Init() [15/18]

void COrfSearchForm::Init ( void  )

virtual

Reimplemented from IDMSearchForm.

Definition at line 282 of file orf_search_tool.cpp.

References IDMSearchForm::Init(), and COrfSearchForm::x_UpdateKozak().

Init() [16/18]

void CSequenceSearchForm::Init ( void  )

virtual

Reimplemented from IDMSearchForm.

Definition at line 226 of file sequence_search_tool.cpp.

References IDMSearchForm::Init(), and CSequenceSearchForm::x_UpdateFileList().

Init() [17/18]

void CVcfSearchForm::Init ( void  )

virtual

Reimplemented from IDMSearchForm.

Definition at line 161 of file vcf_search_tool.cpp.

References IDMSearchForm::Init().

Init() [18/18]

void CResolveIdDlg::Init

(

void

)

Initialises member variables.

Member initialisation

Definition at line 322 of file resolve_id_dlg.cpp.

References CResolveIdDlg::m_Grid, and NULL.

Referenced by CResolveIdDlg::CResolveIdDlg().

InitUI() [1/16]

void CCleanupTool::InitUI ( )

virtual

override this function in a derived class and initialize extra members

Reimplemented from CAlgoToolManagerBase.

Definition at line 78 of file cleanup_tool.cpp.

References CAlgoToolManagerBase::InitUI(), CCleanupTool::m_Panel, and NULL.

InitUI() [2/16]

void CGBFlatFileLoadManager::InitUI ( )

virtual

Initializes the Manager before using it in UI.

This function shall reset Internal state of the tool.

Implements IUIToolManager.

Definition at line 105 of file gb_flatfile_load_manager.cpp.

References CGBFlatFileLoadManager::eParams, and CGBFlatFileLoadManager::m_State.

InitUI() [3/16]

void CGenBankUILoadManager::InitUI ( )

virtual

Initializes the Manager before using it in UI.

This function shall reset Internal state of the tool.

Implements IUIToolManager.

Definition at line 481 of file gb_ui_data_source.cpp.

References CGenBankUILoadManager::eSelectAcc, and CGenBankUILoadManager::m_State.

InitUI() [4/16]

void CMergeTool::InitUI ( )

virtual

override this function in a derived class and initialize extra members

Reimplemented from CAlgoToolManagerBase.

Definition at line 79 of file merge_tool.cpp.

References CAlgoToolManagerBase::InitUI(), CMergeTool::m_Panel, and NULL.

InitUI() [5/16]

void CAutodefToolManager::InitUI ( )

virtual

override this function in a derived class and initialize extra members

Reimplemented from CAlgoToolManagerBase.

Definition at line 84 of file autodef_tool_manager.cpp.

References CAlgoToolManagerBase::InitUI(), CAutodefToolManager::m_ParamsPanel, and NULL.

InitUI() [6/16]

void CSrcEditTool::InitUI ( )

virtual

override this function in a derived class and initialize extra members

Reimplemented from CAlgoToolManagerBase.

Definition at line 87 of file srcedit_tool.cpp.

References CAlgoToolManagerBase::InitUI(), CSrcEditTool::m_Panel, and NULL.

InitUI() [7/16]

void CPhyLoader::InitUI ( )

virtual

Initializes the Manager before using it in UI.

This function shall reset Internal state of the tool.

Implements IUIToolManager.

Definition at line 91 of file phy_loader.cpp.

InitUI() [8/16]

void CRMLoader::InitUI ( )

virtual

Initializes the Manager before using it in UI.

This function shall reset Internal state of the tool.

Implements IUIToolManager.

Definition at line 93 of file rm_load_manager.cpp.

InitUI() [9/16]

void C5ColLoadManager::InitUI ( )

virtual

Initializes the Manager before using it in UI.

This function shall reset Internal state of the tool.

Implements IUIToolManager.

Definition at line 89 of file 5col_load_manager.cpp.

InitUI() [10/16]

void CAgpLoader::InitUI ( )

virtual

Initializes the Manager before using it in UI.

This function shall reset Internal state of the tool.

Implements IUIToolManager.

Definition at line 97 of file agp_loader.cpp.

References CAgpLoader::eParams, and CAgpLoader::m_State.

InitUI() [11/16]

void CBedLoadManager::InitUI ( )

virtual

Initializes the Manager before using it in UI.

This function shall reset Internal state of the tool.

Implements IUIToolManager.

Definition at line 98 of file bed_load_manager.cpp.

References CBedLoadManager::eParams, and CBedLoadManager::m_State.

InitUI() [12/16]

void CColumnarVCFLoaderManager::InitUI ( )

virtual

Initializes the Manager before using it in UI.

This function shall reset Internal state of the tool.

Implements IUIToolManager.

Definition at line 178 of file columnar_vcf_load_manager.cpp.

References CColumnarVCFLoaderManager::eAssembly, and CColumnarVCFLoaderManager::m_State.

InitUI() [13/16]

void CFASTAFormatLoadManager::InitUI ( )

virtual

Initializes the Manager before using it in UI.

This function shall reset Internal state of the tool.

Implements IUIToolManager.

Definition at line 111 of file fasta_format_load_manager.cpp.

References CFASTAFormatLoadManager::eParams, and CFASTAFormatLoadManager::m_State.

InitUI() [14/16]

void CGffLoadManager::InitUI ( )

virtual

Initializes the Manager before using it in UI.

This function shall reset Internal state of the tool.

Implements IUIToolManager.

Definition at line 101 of file gff_load_manager.cpp.

References CGffLoadManager::eParams, and CGffLoadManager::m_State.

InitUI() [15/16]

void CVCFLoaderManager::InitUI ( )

virtual

Initializes the Manager before using it in UI.

This function shall reset Internal state of the tool.

Implements IUIToolManager.

Definition at line 99 of file vcf_load_manager.cpp.

References CVCFLoaderManager::eParams, and CVCFLoaderManager::m_State.

InitUI() [16/16]

void CWigLoadManager::InitUI ( )

virtual

Initializes the Manager before using it in UI.

This function shall reset Internal state of the tool.

Implements IUIToolManager.

Definition at line 98 of file wig_load_manager.cpp.

References CWigLoadManager::eParams, and CWigLoadManager::m_State.

InitView() [1/5]

bool CSeqTextView::InitView ( TConstScopedObjects &  objects, const objects::CUser_object *  params  )

virtual

initialize view with data, inside this function the view must call CProjectService::AttachView to connect to a project

Reimplemented from CProjectView.

Definition at line 87 of file seq_text_view.cpp.

References _ASSERT, CUIObject::GetLabel(), CException::GetMsg(), IServiceLocator::GetServiceByType(), CSeqTextView::GetTypeDescriptor(), CSeqTextPanel::InitObject(), CSeqTextView::m_OrigObj, CSeqTextView::m_Window, CProjectViewBase::m_Workbench, NULL, CProjectViewBase::OnProjectChanged(), CConstRef< C, Locker >::Reset(), ToWxString(), CProjectViewBase::x_AttachToProject(), CSeqTextView::x_MergeObjects(), CProjectViewBase::x_ReportInvalidInputData(), and CProjectViewBase::x_UpdateContentLabel().

InitView() [2/5]

bool CFeatTableView::InitView ( TConstScopedObjects &  objects, const objects::CUser_object *  params  )

virtual

initialize view with data, inside this function the view must call CProjectService::AttachView to connect to a project

Reimplemented from CProjectView.

Definition at line 342 of file view_feattable.cpp.

References CProjectView::InitView(), and CFeatTableView::x_MergeObjects().

InitView() [3/5]

bool CViewGraphic::InitView ( TConstScopedObjects &  objects, const objects::CUser_object *  params  )

virtual

initialize view with data, inside this function the view must call CProjectService::AttachView to connect to a project

Reimplemented from CProjectView.

Definition at line 132 of file view_graphic.cpp.

References _ASSERT, CGraphicPanel::CreateToolbar(), CLabel::eContent, CSeq_id::eFasta, eGetId_Best, fp, CScope::GetBioseqHandle(), CGBDocument::GetDefaultAssembly(), CSeqGraphicWidget::GetFeaturePanel(), CBioseq::GetFirstId(), CUIObject::GetHelpId(), GetId(), CLabel::GetLabel(), CException::GetMsg(), CConstRef< C, Locker >::GetPointer(), CRef< C, Locker >::GetPointer(), CSeq_entry_Base::GetSeq(), CBioseq_Handle::GetSeq_id_Handle(), CSeq_id_Handle::GetSeqId(), IServiceLocator::GetServiceByType(), CSeq_loc::GetTotalRange(), CViewGraphic::GetTypeDescriptor(), CGBDocument::GetUndoManager(), CGraphicPanel::GetWidget(), CGBDocument::GetWorkDir(), GUI_AsyncExec(), Info(), CSeqGraphicWidget::InitBioseqEditor(), CSeqGraphicWidget::InitDataSource(), map_checker< Container >::insert(), CSeq_entry_Base::IsSeq(), CSeq_loc_Base::IsWhole(), ITERATE, LOG_POST, CViewGraphic::m_GraphicPanel, CViewGraphic::m_SeqId, CProjectViewBase::m_Workbench, NULL, SConstScopedObject::object, compile_time_bits::range(), ReportIDError(), CConstRef< C, Locker >::Reset(), SConstScopedObject::scope, CSeqGraphicWidget::SetInputObject(), CSeqGraphicWidget::SetMarkers(), CSeqGraphicWidget::SetWorkDir(), NStr::Split(), str(), ToWxString(), NStr::TruncateSpaces(), CSeqGraphicWidget::UpdateConfig(), wxT, CProjectViewBase::x_AttachToProject(), CViewGraphic::x_GetViewSettingsFromParams(), CViewGraphic::x_MergeObjects(), CProjectViewBase::x_ReportInvalidInputData(), CViewGraphic::x_SetNonAsnInput(), CProjectViewBase::x_UpdateContentLabel(), and CSeqGraphicWidget::ZoomOnRange().

InitView() [4/5]

bool CSequinDesktopView::InitView ( TConstScopedObjects &  objects, const objects::CUser_object *  params  )

virtual

initialize view with data, inside this function the view must call CProjectService::AttachView to connect to a project

Reimplemented from CProjectView.

Definition at line 115 of file sequin_desktop_view.cpp.

References _ASSERT, IServiceLocator::GetServiceByType(), CGBDocument::GetUndoManager(), CTextPanel::GetWidget(), IWMClient::GetWindow(), CSeqDesktopPanel::InitWidget(), CSequinDesktopView::m_Window, CProjectViewBase::m_Workbench, NULL, CTextItemPanel::SetTrackSelection(), CSeqDesktopPanel::SetUndoManager(), CProjectViewBase::x_AttachToProject(), CProjectViewBase::x_ReportInvalidInputData(), and CProjectViewBase::x_UpdateContentLabel().

InitView() [5/5]

bool CTextView::InitView ( TConstScopedObjects &  objects, const objects::CUser_object *  params  )

virtual

initialize view with data, inside this function the view must call CProjectService::AttachView to connect to a project

Reimplemented from CProjectView.

Definition at line 118 of file text_view.cpp.

References _ASSERT, data, CUser_object_Base::GetData(), IServiceLocator::GetServiceByType(), CObject_id_Base::GetStr(), CUser_object_Base::GetType(), CGBDocument::GetUndoManager(), CTextPanel::GetWidget(), CTextPanel::InitWidget(), CObject_id_Base::IsStr(), ITERATE, label, CTextView::m_Window, CProjectViewBase::m_Workbench, NULL, CTextPanel::SetInitialSequence(), CTextPanel::SetInitialViewType(), CTextPanel::SetOpenExpanded(), CTextItemPanel::SetTrackSelection(), CTextPanel::SetUndoManager(), CProjectViewBase::x_AttachToProject(), CProjectViewBase::x_ReportInvalidInputData(), and CProjectViewBase::x_UpdateContentLabel().

IsCompatible() [1/8]

bool CSNPSearchTool::IsCompatible ( IDataMiningContext *  context )

virtual

retuns true if the tool is compatible with the provided Search Context

Implements CSearchToolBase.

Definition at line 121 of file snp_search_tool.cpp.

IsCompatible() [2/8]

bool CComponentSearchTool::IsCompatible ( IDataMiningContext *  context )

virtual

retuns true if the tool is compatible with the provided Search Context

Implements CSearchToolBase.

Definition at line 99 of file component_search_tool.cpp.

References context, and NULL.

IsCompatible() [3/8]

bool CCpgSearchTool::IsCompatible ( IDataMiningContext *  context )

virtual

retuns true if the tool is compatible with the provided Search Context

Implements CSearchToolBase.

Definition at line 220 of file cpg_search_tool.cpp.

References context, and NULL.

IsCompatible() [4/8]

bool CEntrezSearchTool::IsCompatible ( IDataMiningContext *  context )

virtual

retuns true if the tool is compatible with the provided Search Context

Implements CSearchToolBase.

Definition at line 116 of file entrez_search_tool.cpp.

IsCompatible() [5/8]

bool CFeatureSearchTool::IsCompatible ( IDataMiningContext *  context )

virtual

retuns true if the tool is compatible with the provided Search Context

Implements CSearchToolBase.

Definition at line 104 of file feature_search_tool.cpp.

References context, and NULL.

IsCompatible() [6/8]

bool COrfSearchTool::IsCompatible ( IDataMiningContext *  context )

virtual

retuns true if the tool is compatible with the provided Search Context

Implements CSearchToolBase.

Definition at line 198 of file orf_search_tool.cpp.

References context, and NULL.

IsCompatible() [7/8]

bool CSequenceSearchTool::IsCompatible ( IDataMiningContext *  context )

virtual

retuns true if the tool is compatible with the provided Search Context

Implements CSearchToolBase.

Definition at line 145 of file sequence_search_tool.cpp.

References context, and NULL.

IsCompatible() [8/8]

bool CVcfSearchTool::IsCompatible ( IDataMiningContext *  context )

virtual

retuns true if the tool is compatible with the provided Search Context

Implements CSearchToolBase.

Definition at line 100 of file vcf_search_tool.cpp.

References context, ISeqLocSearchContext::GetNonAsnData(), and NULL.

IsCompatibleWith() [1/3]

bool CSeqTextViewFactory::IsCompatibleWith ( const CObject &  object, objects::CScope &  scope  )

virtual

Reimplemented from IProjectViewFactory.

Definition at line 298 of file seq_text_view.cpp.

Referenced by CSeqTextViewFactory::TestInputObjects(), and CSeqTextViewFactory::x_NeedsConversion().

IsCompatibleWith() [2/3]

bool CFeatTableViewFactory::IsCompatibleWith ( const CObject &  object, objects::CScope &  scope  )

virtual

Reimplemented from IProjectViewFactory.

Definition at line 604 of file view_feattable.cpp.

References CSeq_annot::IsFtable(), and type.

Referenced by CFeatTableViewFactory::TestInputObjects(), and CFeatTableViewFactory::x_NeedsConversion().

IsCompatibleWith() [3/3]

bool CViewGraphicFactory::IsCompatibleWith ( const CObject &  object, objects::CScope &  scope  )

virtual

Reimplemented from IProjectViewFactory.

Definition at line 743 of file view_graphic.cpp.

References CSeq_entry_Base::IsSeq(), and type.

Referenced by CViewGraphicFactory::TestInputObjects(), and CViewGraphicFactory::x_NeedsConversion().

IsCompletedState() [1/12]

bool CGBFlatFileLoadManager::IsCompletedState ( )

virtual

Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated.

Typically this is the last state after Final state. This state does not have an associated UI panel. When manager reaches the “Completed” state the framework hides the dialog and calls GetTask() function.

Implements IUIToolManager.

Definition at line 152 of file gb_flatfile_load_manager.cpp.

References CGBFlatFileLoadManager::eCompleted, and CGBFlatFileLoadManager::m_State.

IsCompletedState() [2/12]

bool CGenBankUILoadManager::IsCompletedState ( )

virtual

Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated.

Typically this is the last state after Final state. This state does not have an associated UI panel. When manager reaches the “Completed” state the framework hides the dialog and calls GetTask() function.

Implements IUIToolManager.

Definition at line 542 of file gb_ui_data_source.cpp.

References CGenBankUILoadManager::eCompleted, and CGenBankUILoadManager::m_State.

IsCompletedState() [3/12]

bool CPhyLoader::IsCompletedState ( )

virtual

Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated.

Typically this is the last state after Final state. This state does not have an associated UI panel. When manager reaches the “Completed” state the framework hides the dialog and calls GetTask() function.

Implements IUIToolManager.

Definition at line 135 of file phy_loader.cpp.

IsCompletedState() [4/12]

bool CRMLoader::IsCompletedState ( )

virtual

Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated.

Typically this is the last state after Final state. This state does not have an associated UI panel. When manager reaches the “Completed” state the framework hides the dialog and calls GetTask() function.

Implements IUIToolManager.

Definition at line 122 of file rm_load_manager.cpp.

IsCompletedState() [5/12]

bool C5ColLoadManager::IsCompletedState ( )

virtual

Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated.

Typically this is the last state after Final state. This state does not have an associated UI panel. When manager reaches the “Completed” state the framework hides the dialog and calls GetTask() function.

Implements IUIToolManager.

Definition at line 116 of file 5col_load_manager.cpp.

IsCompletedState() [6/12]

bool CAgpLoader::IsCompletedState ( )

virtual

Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated.

Typically this is the last state after Final state. This state does not have an associated UI panel. When manager reaches the “Completed” state the framework hides the dialog and calls GetTask() function.

Implements IUIToolManager.

Definition at line 145 of file agp_loader.cpp.

References CAgpLoader::eCompleted, and CAgpLoader::m_State.

IsCompletedState() [7/12]

bool CBedLoadManager::IsCompletedState ( )

virtual

Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated.

Typically this is the last state after Final state. This state does not have an associated UI panel. When manager reaches the “Completed” state the framework hides the dialog and calls GetTask() function.

Implements IUIToolManager.

Definition at line 146 of file bed_load_manager.cpp.

References CBedLoadManager::eCompleted, and CBedLoadManager::m_State.

IsCompletedState() [8/12]

bool CColumnarVCFLoaderManager::IsCompletedState ( )

virtual

Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated.

Typically this is the last state after Final state. This state does not have an associated UI panel. When manager reaches the “Completed” state the framework hides the dialog and calls GetTask() function.

Implements IUIToolManager.

Definition at line 264 of file columnar_vcf_load_manager.cpp.

References CColumnarVCFLoaderManager::eCompleted, and CColumnarVCFLoaderManager::m_State.

IsCompletedState() [9/12]

bool CFASTAFormatLoadManager::IsCompletedState ( )

virtual

Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated.

Typically this is the last state after Final state. This state does not have an associated UI panel. When manager reaches the “Completed” state the framework hides the dialog and calls GetTask() function.

Implements IUIToolManager.

Definition at line 159 of file fasta_format_load_manager.cpp.

References CFASTAFormatLoadManager::eCompleted, and CFASTAFormatLoadManager::m_State.

IsCompletedState() [10/12]

bool CGffLoadManager::IsCompletedState ( )

virtual

Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated.

Typically this is the last state after Final state. This state does not have an associated UI panel. When manager reaches the “Completed” state the framework hides the dialog and calls GetTask() function.

Implements IUIToolManager.

Definition at line 149 of file gff_load_manager.cpp.

References CGffLoadManager::eCompleted, and CGffLoadManager::m_State.

IsCompletedState() [11/12]

bool CVCFLoaderManager::IsCompletedState ( )

virtual

Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated.

Typically this is the last state after Final state. This state does not have an associated UI panel. When manager reaches the “Completed” state the framework hides the dialog and calls GetTask() function.

Implements IUIToolManager.

Definition at line 146 of file vcf_load_manager.cpp.

References CVCFLoaderManager::eCompleted, and CVCFLoaderManager::m_State.

IsCompletedState() [12/12]

bool CWigLoadManager::IsCompletedState ( )

virtual

Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated.

Typically this is the last state after Final state. This state does not have an associated UI panel. When manager reaches the “Completed” state the framework hides the dialog and calls GetTask() function.

Implements IUIToolManager.

Definition at line 147 of file wig_load_manager.cpp.

References CWigLoadManager::eCompleted, and CWigLoadManager::m_State.

IsFinalState() [1/15]

bool CCleanupTool::IsFinalState ( )

virtual

True if Tool Manager has reached its final state, i.e.

the last page (panel) in the sequence is displayed and "Finish" button is shown. The framework calls this function to decide whether “Finish” or “Next” button needs to be shown.

Reimplemented from CAlgoToolManagerBase.

Definition at line 91 of file cleanup_tool.cpp.

References CAlgoToolManagerBase::eParams, and CAlgoToolManagerBase::m_State.

IsFinalState() [2/15]

bool CGBFlatFileLoadManager::IsFinalState ( )

virtual

True if Tool Manager has reached its final state, i.e.

the last page (panel) in the sequence is displayed and "Finish" button is shown. The framework calls this function to decide whether “Finish” or “Next” button needs to be shown.

Implements IUIToolManager.

Definition at line 146 of file gb_flatfile_load_manager.cpp.

References CGBFlatFileLoadManager::eParams, and CGBFlatFileLoadManager::m_State.

IsFinalState() [3/15]

bool CGenBankUILoadManager::IsFinalState ( )

virtual

True if Tool Manager has reached its final state, i.e.

the last page (panel) in the sequence is displayed and "Finish" button is shown. The framework calls this function to decide whether “Finish” or “Next” button needs to be shown.

Implements IUIToolManager.

Definition at line 536 of file gb_ui_data_source.cpp.

References CGenBankUILoadManager::eSelectProject, and CGenBankUILoadManager::m_State.

IsFinalState() [4/15]

bool CMergeTool::IsFinalState ( )

virtual

True if Tool Manager has reached its final state, i.e.

the last page (panel) in the sequence is displayed and "Finish" button is shown. The framework calls this function to decide whether “Finish” or “Next” button needs to be shown.

Reimplemented from CAlgoToolManagerBase.

Definition at line 91 of file merge_tool.cpp.

References CAlgoToolManagerBase::eParams, and CAlgoToolManagerBase::m_State.

IsFinalState() [5/15]

bool CSrcEditTool::IsFinalState ( )

virtual

True if Tool Manager has reached its final state, i.e.

the last page (panel) in the sequence is displayed and "Finish" button is shown. The framework calls this function to decide whether “Finish” or “Next” button needs to be shown.

Reimplemented from CAlgoToolManagerBase.

Definition at line 100 of file srcedit_tool.cpp.

References CAlgoToolManagerBase::eParams, and CAlgoToolManagerBase::m_State.

IsFinalState() [6/15]

bool CPhyLoader::IsFinalState ( )

virtual

True if Tool Manager has reached its final state, i.e.

the last page (panel) in the sequence is displayed and "Finish" button is shown. The framework calls this function to decide whether “Finish” or “Next” button needs to be shown.

Implements IUIToolManager.

Definition at line 128 of file phy_loader.cpp.

IsFinalState() [7/15]

bool CRMLoader::IsFinalState ( )

virtual

True if Tool Manager has reached its final state, i.e.

the last page (panel) in the sequence is displayed and "Finish" button is shown. The framework calls this function to decide whether “Finish” or “Next” button needs to be shown.

Implements IUIToolManager.

Definition at line 116 of file rm_load_manager.cpp.

IsFinalState() [8/15]

bool C5ColLoadManager::IsFinalState ( )

virtual

True if Tool Manager has reached its final state, i.e.

the last page (panel) in the sequence is displayed and "Finish" button is shown. The framework calls this function to decide whether “Finish” or “Next” button needs to be shown.

Implements IUIToolManager.

Definition at line 110 of file 5col_load_manager.cpp.

IsFinalState() [9/15]

bool CAgpLoader::IsFinalState ( )

virtual

True if Tool Manager has reached its final state, i.e.

the last page (panel) in the sequence is displayed and "Finish" button is shown. The framework calls this function to decide whether “Finish” or “Next” button needs to be shown.

Implements IUIToolManager.

Definition at line 139 of file agp_loader.cpp.

References CAgpLoader::eParams, and CAgpLoader::m_State.

IsFinalState() [10/15]

bool CBedLoadManager::IsFinalState ( )

virtual

True if Tool Manager has reached its final state, i.e.

the last page (panel) in the sequence is displayed and "Finish" button is shown. The framework calls this function to decide whether “Finish” or “Next” button needs to be shown.

Implements IUIToolManager.

Definition at line 140 of file bed_load_manager.cpp.

References CBedLoadManager::eParams, and CBedLoadManager::m_State.

IsFinalState() [11/15]

bool CColumnarVCFLoaderManager::IsFinalState ( )

virtual

True if Tool Manager has reached its final state, i.e.

the last page (panel) in the sequence is displayed and "Finish" button is shown. The framework calls this function to decide whether “Finish” or “Next” button needs to be shown.

Implements IUIToolManager.

Definition at line 258 of file columnar_vcf_load_manager.cpp.

References CColumnarVCFLoaderManager::eCompleted, and CColumnarVCFLoaderManager::m_State.

IsFinalState() [12/15]

bool CFASTAFormatLoadManager::IsFinalState ( )

virtual

True if Tool Manager has reached its final state, i.e.

the last page (panel) in the sequence is displayed and "Finish" button is shown. The framework calls this function to decide whether “Finish” or “Next” button needs to be shown.

Implements IUIToolManager.

Definition at line 153 of file fasta_format_load_manager.cpp.

References CFASTAFormatLoadManager::eParams, and CFASTAFormatLoadManager::m_State.

IsFinalState() [13/15]

bool CGffLoadManager::IsFinalState ( )

virtual

True if Tool Manager has reached its final state, i.e.

the last page (panel) in the sequence is displayed and "Finish" button is shown. The framework calls this function to decide whether “Finish” or “Next” button needs to be shown.

Implements IUIToolManager.

Definition at line 143 of file gff_load_manager.cpp.

References CGffLoadManager::eParams, and CGffLoadManager::m_State.

IsFinalState() [14/15]

bool CVCFLoaderManager::IsFinalState ( )

virtual

True if Tool Manager has reached its final state, i.e.

the last page (panel) in the sequence is displayed and "Finish" button is shown. The framework calls this function to decide whether “Finish” or “Next” button needs to be shown.

Implements IUIToolManager.

Definition at line 140 of file vcf_load_manager.cpp.

References CVCFLoaderManager::eParams, and CVCFLoaderManager::m_State.

IsFinalState() [15/15]

bool CWigLoadManager::IsFinalState ( )

virtual

True if Tool Manager has reached its final state, i.e.

the last page (panel) in the sequence is displayed and "Finish" button is shown. The framework calls this function to decide whether “Finish” or “Next” button needs to be shown.

Implements IUIToolManager.

Definition at line 141 of file wig_load_manager.cpp.

References CWigLoadManager::eParams, and CWigLoadManager::m_State.

IsInitialState() [1/11]

bool CGBFlatFileLoadManager::IsInitialState ( )

virtual

return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence)

Implements IFileFormatLoaderManager.

Definition at line 211 of file gb_flatfile_load_manager.cpp.

References CGBFlatFileLoadManager::eParams, and CGBFlatFileLoadManager::m_State.

IsInitialState() [2/11]

bool CPhyLoader::IsInitialState ( )

virtual

return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence)

Implements IFileFormatLoaderManager.

Definition at line 183 of file phy_loader.cpp.

IsInitialState() [3/11]

bool CRMLoader::IsInitialState ( )

virtual

return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence)

Implements IFileFormatLoaderManager.

Definition at line 170 of file rm_load_manager.cpp.

IsInitialState() [4/11]

bool C5ColLoadManager::IsInitialState ( )

virtual

return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence)

Implements IFileFormatLoaderManager.

Definition at line 164 of file 5col_load_manager.cpp.

IsInitialState() [5/11]

bool CAgpLoader::IsInitialState ( )

virtual

return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence)

Implements IFileFormatLoaderManager.

Definition at line 204 of file agp_loader.cpp.

References CAgpLoader::eParams, and CAgpLoader::m_State.

IsInitialState() [6/11]

bool CBedLoadManager::IsInitialState ( )

virtual

return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence)

Implements IFileFormatLoaderManager.

Definition at line 204 of file bed_load_manager.cpp.

References CBedLoadManager::eParams, and CBedLoadManager::m_State.

IsInitialState() [7/11]

bool CColumnarVCFLoaderManager::IsInitialState ( )

virtual

return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence)

Implements IFileFormatLoaderManager.

Definition at line 449 of file columnar_vcf_load_manager.cpp.

References CColumnarVCFLoaderManager::eAssembly, and CColumnarVCFLoaderManager::m_State.

IsInitialState() [8/11]

bool CFASTAFormatLoadManager::IsInitialState ( )

virtual

return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence)

Implements IFileFormatLoaderManager.

Definition at line 218 of file fasta_format_load_manager.cpp.

References CFASTAFormatLoadManager::eParams, and CFASTAFormatLoadManager::m_State.

IsInitialState() [9/11]

bool CGffLoadManager::IsInitialState ( )

virtual

return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence)

Implements IFileFormatLoaderManager.

Definition at line 210 of file gff_load_manager.cpp.

References CGffLoadManager::eParams, and CGffLoadManager::m_State.

IsInitialState() [10/11]

bool CVCFLoaderManager::IsInitialState ( )

virtual

return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence)

Implements IFileFormatLoaderManager.

Definition at line 205 of file vcf_load_manager.cpp.

References CVCFLoaderManager::eParams, and CVCFLoaderManager::m_State.

IsInitialState() [11/11]

bool CWigLoadManager::IsInitialState ( )

virtual

return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence)

Implements IFileFormatLoaderManager.

Definition at line 205 of file wig_load_manager.cpp.

References CWigLoadManager::eParams, and CWigLoadManager::m_State.

IsInputValid()

bool CGenBankLoadOptionPanel::IsInputValid

(

)

Definition at line 216 of file gb_load_option_panel.cpp.

References EMPTY_INPUT, GB_LOADER_ERR, NStr::IntToString(), INVALID_ELEMS_MSG, INVALID_INPUT, CGenBankLoadOptionPanel::m_ErrNum, CGenBankLoadOptionPanel::m_TokensNum, text(), ToWxString(), wxT, and CGenBankLoadOptionPanel::x_ValidateInput().

Referenced by CGenBankUILoadManager::DoTransition().

IsOpen()

bool CGenBankUIDataSource::IsOpen ( )

virtual

a Data source needs to be open before use and closed after.

Implements IUIDataSource.

Definition at line 190 of file gb_ui_data_source.cpp.

References CGenBankUIDataSource::m_Open.

Label() [1/11]

static string CGBFlatFileLoadManager::Label ( )

inlinestatic

Definition at line 118 of file gb_flatfile_load_manager.hpp.

Label() [2/11]

static string CPhyLoader::Label ( )

inlinestatic

Definition at line 117 of file phy_loader.hpp.

Label() [3/11]

static string CRMLoader::Label ( )

inlinestatic

Definition at line 107 of file rm_load_manager.hpp.

Label() [4/11]

static string C5ColLoadManager::Label ( )

inlinestatic

Definition at line 119 of file 5col_load_manager.hpp.

Label() [5/11]

static string CAgpLoader::Label ( )

inlinestatic

Definition at line 123 of file agp_loader.hpp.

Label() [6/11]

static string CBedLoadManager::Label ( )

inlinestatic

Definition at line 123 of file bed_load_manager.hpp.

Label() [7/11]

static string CColumnarVCFLoaderManager::Label ( )

inlinestatic

Definition at line 127 of file columnar_vcf_load_manager.hpp.

Label() [8/11]

static string CFASTAFormatLoadManager::Label ( )

inlinestatic

Definition at line 122 of file fasta_format_load_manager.hpp.

Label() [9/11]

static string CGffLoadManager::Label ( )

inlinestatic

Definition at line 126 of file gff_load_manager.hpp.

Label() [10/11]

static string CVCFLoaderManager::Label ( )

inlinestatic

Definition at line 121 of file vcf_load_manager.hpp.

Label() [11/11]

static string CWigLoadManager::Label ( )

inlinestatic

Definition at line 123 of file wig_load_manager.hpp.

LoadSettings() [1/18]

void CCleanupPanel::LoadSettings ( )

virtual

Implements CAlgoToolManagerParamsPanel.

Definition at line 238 of file cleanup_panel.cpp.

References CGuiRegistry::GetInstance(), CGuiRegistry::GetReadView(), kTableTag, CwxTableListCtrl::LoadTableSettings(), CCleanupPanel::m_ObjectList, CAlgoToolManagerParamsPanel::m_RegPath, and CGuiRegistryUtil::MakeKey().

Referenced by CCleanupTool::x_CreateParamsPanelIfNeeded().

LoadSettings() [2/18]

void CCleanupParams::LoadSettings ( )

virtual

Implements IRegSettings.

Definition at line 132 of file cleanup_params.cpp.

References CGuiRegistry::GetInstance(), CRegistryReadView::GetInt(), CGuiRegistry::GetReadView(), kCleanupModeTag, CCleanupParams::m_CleanupMode, and CCleanupParams::m_RegPath.

LoadSettings() [3/18]

void CGBFlatFileLoadManager::LoadSettings ( )

virtual

Implements IRegSettings.

Definition at line 252 of file gb_flatfile_load_manager.cpp.

References CGBFlatFileLoadParams::LoadSettings(), and CGBFlatFileLoadManager::m_Params.

LoadSettings() [4/18]

void CGenBankUILoadManager::LoadSettings ( )

virtual

Implements IRegSettings.

Definition at line 629 of file gb_ui_data_source.cpp.

References CGuiRegistry::GetInstance(), CGuiRegistry::GetReadView(), kProjectParamsTag, CGenBankLoadOptionPanel::LoadSettings(), SProjectSelectorParams::LoadSettings(), CGenBankUILoadManager::m_OptionPanel, CGenBankUILoadManager::m_ProjectParams, and CGenBankUILoadManager::m_RegPath.

Referenced by CGenBankUILoadManager::GetCurrentPanel().

LoadSettings() [5/18]

void CFeatTableView::LoadSettings ( )

virtual

Implements IRegSettings.

Definition at line 262 of file view_feattable.cpp.

References CGuiRegistry::GetInstance(), CGuiRegistry::GetReadView(), CwxTableListCtrl::LoadTableSettings(), CFeatTableView::m_FTblWidget, and CFeatTableView::m_RegPath.

LoadSettings() [6/18]

void CSrcEditParams::LoadSettings ( )

virtual

Implements IRegSettings.

Definition at line 120 of file srcedit_params.cpp.

LoadSettings() [7/18]

void CFastaLoadParams::LoadSettings ( )

virtual

Implements IRegSettings.

Definition at line 162 of file fasta_load_params.cpp.

References CRegistryReadView::GetBool(), CGuiRegistry::GetInstance(), CRegistryReadView::GetInt(), CGuiRegistry::GetReadView(), kForceLocalIDsTag, kIgnoreGaps, kLowercaseOptionTag, kMakeDeltaTag, kNoSplit, kReadFirstTag, kSeqTypeTag, kSkipInvalidTag, CFastaLoadParams::m_ForceLocalIDs, CFastaLoadParams::m_IgnoreGaps, CFastaLoadParams::m_LowercaseOption, CFastaLoadParams::m_MakeDelta, CFastaLoadParams::m_NoSplit, CFastaLoadParams::m_ReadFirst, CFastaLoadParams::m_RegPath, CFastaLoadParams::m_SeqType, and CFastaLoadParams::m_SkipInvalid.

Referenced by CFASTAFormatLoadManager::LoadSettings().

LoadSettings() [8/18]

void CGffLoadParams::LoadSettings ( )

virtual

Implements IRegSettings.

Definition at line 142 of file gff_load_params.cpp.

References CGuiRegistry::GetInstance(), CRegistryReadView::GetInt(), CGuiRegistry::GetReadView(), CRegistryReadView::GetString(), kFileFormat, kMapAssembly, kNameFeatSet, kParseSeqIds, CMapAssemblyParams::LoadSettings(), CGffLoadParams::m_FileFormat, CGffLoadParams::m_MapAssembly, CGffLoadParams::m_NameFeatSet, CGffLoadParams::m_ParseSeqIds, CGffLoadParams::m_RegPath, ToStdString(), and ToWxString().

Referenced by CGffLoadManager::LoadSettings().

LoadSettings() [9/18]

void CPhyLoader::LoadSettings ( )

virtual

Implements IRegSettings.

Definition at line 224 of file phy_loader.cpp.

LoadSettings() [10/18]

void C5ColLoadManager::LoadSettings ( )

virtual

Implements IRegSettings.

Definition at line 204 of file 5col_load_manager.cpp.

LoadSettings() [11/18]

void CAgpLoader::LoadSettings ( )

virtual

Implements IRegSettings.

Definition at line 246 of file agp_loader.cpp.

References CAgpLoadParams::LoadSettings(), and CAgpLoader::m_Params.

LoadSettings() [12/18]

void CBedLoadManager::LoadSettings ( )

virtual

Implements IRegSettings.

Definition at line 249 of file bed_load_manager.cpp.

References CBedLoadParams::LoadSettings(), and CBedLoadManager::m_Params.

LoadSettings() [13/18]

void CColumnarVCFLoaderManager::LoadSettings ( )

virtual

Implements IRegSettings.

Definition at line 495 of file columnar_vcf_load_manager.cpp.

References CVcfAssemblySelectionPanel::LoadSettings(), CColumnarVCFLoaderManager::m_AssemblyPanel, and CColumnarVCFLoaderManager::m_RegPath.

LoadSettings() [14/18]

void CFASTAFormatLoadManager::LoadSettings ( )

virtual

Implements IRegSettings.

Definition at line 261 of file fasta_format_load_manager.cpp.

References CFastaLoadParams::LoadSettings(), and CFASTAFormatLoadManager::m_Params.

LoadSettings() [15/18]

void CGffLoadManager::LoadSettings ( )

virtual

Implements IRegSettings.

Definition at line 262 of file gff_load_manager.cpp.

References CGffLoadParams::LoadSettings(), and CGffLoadManager::m_Params.

LoadSettings() [16/18]

void CVCFLoaderManager::LoadSettings ( )

virtual

Implements IRegSettings.

Definition at line 249 of file vcf_load_manager.cpp.

References CBedLoadParams::LoadSettings(), and CVCFLoaderManager::m_Params.

LoadSettings() [17/18]

void CWigLoadManager::LoadSettings ( )

virtual

Implements IRegSettings.

Definition at line 248 of file wig_load_manager.cpp.

References CWigLoadParams::LoadSettings(), and CWigLoadManager::m_Params.

LoadSettings() [18/18]

void CGenBankLoadOptionPanel::LoadSettings

(

const string &

regPath

)

Definition at line 521 of file gb_load_option_panel.cpp.

References CTimeMRUList< T >::Add(), CTimeMRUList< T >::Clear(), CTimeFormat::eISO8601_DateTimeSec, format, CGuiRegistry::GetInstance(), CTimeFormat::GetPredefined(), CGuiRegistry::GetReadView(), CRegistryReadView::GetString(), CRegistryReadView::GetStringVec(), CTime::GetTimeT(), i, input(), kEmptyStr, kIdsInputTag, kMRUTag, kPanelTag, CGenBankLoadOptionPanel::m_AccMRUList, CGenBankLoadOptionPanel::SetInput(), t, NStr::URLDecode(), and CGenBankLoadOptionPanel::x_FillMRUList().

Referenced by CGenBankUILoadManager::LoadSettings(), and CGBLoadWizard::LoadSettings().

OnAccInputUpdated()

void CGenBankLoadOptionPanel::OnAccInputUpdated

(

wxCommandEvent &

event

)

wxEVT_COMMAND_TEXT_UPDATED event handler for ID_ACC_INPUT

Definition at line 560 of file gb_load_option_panel.cpp.

References CGenBankLoadOptionPanel::m_AccInput, and CGenBankLoadOptionPanel::x_ValidateInput().

OnOpenGraphicalView()

void CViewGraphic::OnOpenGraphicalView

(

CEvent *

evt

)

Definition at line 602 of file view_graphic.cpp.

References COpenGraphicViewEvent::GetObject(), COpenGraphicViewEvent::GetParams(), IServiceLocator::GetServiceByType(), and CProjectViewBase::m_Workbench.

OnParseSeqIdLocalSelected()

void CGffParamsPanel::OnParseSeqIdLocalSelected

(

wxCommandEvent &

event

)

wxEVT_COMMAND_RADIOBUTTON_SELECTED event handler for ID_SEQ_ID_LOCAL

Definition at line 299 of file gff_params_panel.cpp.

References CGffParamsPanel::x_SetParseSeqId().

OnParseSeqIdNormalSelected()

void CGffParamsPanel::OnParseSeqIdNormalSelected

(

wxCommandEvent &

event

)

wxEVT_COMMAND_RADIOBUTTON_SELECTED event handler for ID_SEQ_ID_NORMAL

Definition at line 289 of file gff_params_panel.cpp.

References CGffParamsPanel::x_SetParseSeqId().

OnParseSeqIdNumericSelected()

void CGffParamsPanel::OnParseSeqIdNumericSelected

(

wxCommandEvent &

event

)

wxEVT_COMMAND_RADIOBUTTON_SELECTED event handler for IDSEQ_ID_NUMERIC

Definition at line 294 of file gff_params_panel.cpp.

References CGffParamsPanel::x_SetParseSeqId().

OnProjectChanged() [1/5]

void CFeatTableView::OnProjectChanged ( )

virtual

Reimplemented from CProjectViewBase.

Definition at line 357 of file view_feattable.cpp.

References CFeatTableView::x_Update(), and CProjectViewBase::x_UpdateContentLabel().

Referenced by CFeatTableView::OnProjectChanged(), and CFeatTableView::x_PostAttachToProject().

OnProjectChanged() [2/5]

void CFeatTableView::OnProjectChanged ( CProjectViewEvent &  evt )

virtual

Reimplemented from CProjectViewBase.

Definition at line 349 of file view_feattable.cpp.

References CProjectViewEvent::eData, CProjectViewEvent::GetSubtype(), and CFeatTableView::OnProjectChanged().

OnProjectChanged() [3/5]

void CViewGraphic::OnProjectChanged ( CProjectViewEvent &  evt )

virtual

Reimplemented from CProjectViewBase.

Definition at line 335 of file view_graphic.cpp.

References _ASSERT, CProjectViewEvent::eBothPropsData, CProjectViewEvent::eData, CProjectViewEvent::eDataChanging, CProjectViewEvent::GetProjectId(), IServiceLocator::GetServiceByType(), CProjectViewEvent::GetSubtype(), CGraphicPanel::GetWidget(), CViewGraphic::m_GraphicPanel, CProjectViewBase::m_Workbench, CSeqGraphicWidget::OnDataChanged(), CSeqGraphicWidget::OnDataChanging(), and CViewGraphic::x_SetNonAsnInput().

OnProjectChanged() [4/5]

void CSequinDesktopView::OnProjectChanged ( CProjectViewEvent &  evt )

virtual

Reimplemented from CProjectViewBase.

Definition at line 164 of file sequin_desktop_view.cpp.

References CSeqDesktopPanel::DataChanged(), CSeqDesktopPanel::DataChanging(), CProjectViewEvent::eBothPropsData, CProjectViewEvent::eData, CProjectViewEvent::eDataChanging, CProjectViewEvent::GetSubtype(), and CSequinDesktopView::m_Window.

OnProjectChanged() [5/5]

void CTextView::OnProjectChanged ( CProjectViewEvent &  evt )

virtual

Reimplemented from CProjectViewBase.

Definition at line 203 of file text_view.cpp.

References CTextPanel::DataChanged(), CTextPanel::DataChanging(), CProjectViewEvent::eBothPropsData, CProjectViewEvent::eData, CProjectViewEvent::eDataChanging, CProjectViewEvent::GetSubtype(), and CTextView::m_Window.

OnRecentAccClicked()

void CGenBankLoadOptionPanel::OnRecentAccClicked

(

wxHtmlLinkEvent &

event

)

wxEVT_COMMAND_HTML_LINK_CLICKED event handler for ID_HTMLWINDOW2

Definition at line 450 of file gb_load_option_panel.cpp.

References NStr::fSplit_Tokenize, CGenBankLoadOptionPanel::GetInput(), info, input(), NStr::Join(), CGenBankLoadOptionPanel::m_AccInput, sDelim(), NStr::Split(), ToStdString(), ToWxString(), NStr::TruncateSpacesInPlace(), and wxT.

OnTextGotFocus()

void CTextView::OnTextGotFocus ( )

virtual

ITextWidgetHost implementation.

Implements ITextWidgetHost.

Definition at line 359 of file text_view.cpp.

References IServiceLocator::GetServiceByType(), CTextView::m_UsingStatusBar, CProjectViewBase::m_Workbench, and NULL.

OnTextLostFocus()

void CTextView::OnTextLostFocus ( )

virtual

Implements ITextWidgetHost.

Definition at line 368 of file text_view.cpp.

References IServiceLocator::GetServiceByType(), CTextView::m_UsingStatusBar, and CProjectViewBase::m_Workbench.

OnTextPositionChanged()

void CTextView::OnTextPositionChanged ( int  row, int  col  )

virtual

Implements ITextWidgetHost.

Definition at line 377 of file text_view.cpp.

References IServiceLocator::GetServiceByType(), CProjectViewBase::m_Workbench, row, text(), and ToWxString().

OnViewAttached()

void CViewGraphic::OnViewAttached ( IView &  )

virtual

Reimplemented from CProjectViewBase.

Definition at line 610 of file view_graphic.cpp.

References IWorkbench::GetViewManagerService(), IViewManagerService::GetViews(), CProjectViewBase::m_Workbench, and CViewGraphic::x_UpdateVisRangeLayout().

OnViewReleased()

void CViewGraphic::OnViewReleased ( IView &  view )

virtual

Reimplemented from CProjectViewBase.

Definition at line 617 of file view_graphic.cpp.

References CProjectViewBase::GetId(), IWorkbench::GetViewManagerService(), IViewManagerService::GetViews(), CProjectViewBase::m_Workbench, NON_CONST_ITERATE, and CViewGraphic::x_UpdateVisRangeLayout().

OnVisibleRangeChanged()

void CViewGraphic::OnVisibleRangeChanged ( const CVisibleRange &  vrange, IVisibleRangeClient *  source  )

virtual

Reimplemented from CProjectView.

Definition at line 522 of file view_graphic.cpp.

References CVisibleRange::Clamp(), Error(), CSeqGraphicWidget::fSaveRange, IWorkbench::GetViewManagerService(), IViewManagerService::GetViews(), CSeqGraphicWidget::GetVisibleSeqRange(), CGraphicPanel::GetWidget(), LOG_POST, CViewGraphic::m_GraphicPanel, CViewGraphic::m_SeqId, CProjectViewBase::m_Workbench, CVisibleRange::Match(), CProjectViewBase::x_GetScope(), CViewGraphic::x_UpdateVisRangeLayout(), and CSeqGraphicWidget::ZoomOnRange().

OnWidgetCommand() [1/2]

void CSequinDesktopView::OnWidgetCommand ( const string &  command )

virtual

Implements IGuiWidgetHost.

Definition at line 277 of file sequin_desktop_view.cpp.

OnWidgetCommand() [2/2]

void CTextView::OnWidgetCommand ( const string &  command )

virtual

Implements IGuiWidgetHost.

Definition at line 346 of file text_view.cpp.

OnWidgetDataChanged()

void CViewGraphic::OnWidgetDataChanged

(

CEvent *

evt

)

Definition at line 595 of file view_graphic.cpp.

References _ASSERT, CGraphicPanel::GetWidget(), CViewGraphic::m_GraphicPanel, and CSeqGraphicWidget::OnMarkerChanged().

OnWidgetRangeChanged() [1/2]

void CFeatTableView::OnWidgetRangeChanged ( )

virtual

Reimplemented from CProjectView.

Definition at line 410 of file view_feattable.cpp.

References CFeatTableView::x_UpdateStatusMessage().

OnWidgetRangeChanged() [2/2]

void CViewGraphic::OnWidgetRangeChanged ( )

virtual

Reimplemented from CProjectView.

Definition at line 587 of file view_graphic.cpp.

References IWorkbench::GetViewManagerService(), IViewManagerService::GetViews(), CProjectViewBase::m_Workbench, and CViewGraphic::x_UpdateVisRangeLayout().

OnWidgetSelChanged()

void CFeatTableView::OnWidgetSelChanged ( )

virtual

Reimplemented from CProjectView.

Definition at line 404 of file view_feattable.cpp.

References CProjectView::OnWidgetSelChanged(), and CFeatTableView::x_UpdateStatusMessage().

Open()

bool CGenBankUIDataSource::Open ( )

virtual

Prepares Data Source for use, any initialization that can be potentially time-consuming or may require error handling shall be done in this function, not in a constructor.

Is initialization takes more than 1-2 sec it shall be done on a background thread (see App Job Dispatcher).

Implements IUIDataSource.

Definition at line 198 of file gb_ui_data_source.cpp.

References DirName(), NStr::DoubleToString(), CObjectManager::eDefault, CStopWatch::Elapsed(), Error(), FnToStdString(), FnToWxString(), IRegistry::GetBool(), CGuiRegistry::GetInstance(), CExtensionRegistry::GetInstance(), CObjectManager::GetInstance(), CRegistryReadView::GetInt(), CException::GetMsg(), CDataLoader::GetName(), IRegistry::GetString(), CConfig::GetTree(), in(), Info(), NStr::IntToString(), kAppExpCmdExtPoint, LOG_POST, CGenBankUIDataSource::m_ObjMgr, CGenBankUIDataSource::m_Open, msg(), IRWRegistry::Read(), CObjectManager::RegisterDataLoader(), CCSRADataLoader::RegisterInObjectManager(), CGBDataLoader::RegisterInObjectManager(), registry, CSysPath::ResolvePath(), CSysPath::ResolvePathExisting(), CStopWatch::Restart(), IRWRegistry::Set(), CObjectManager::SetLoaderOptions(), CStopWatch::Start(), sw, t, CException::what(), and wxT.

operator=() [1/4]

void CCleanupParams::operator=

(

const CCleanupParams &

data

)

Assignment operator for CCleanupParams.

Assignment operator for CCleanupParams

Definition at line 73 of file cleanup_params.cpp.

References CCleanupParams::Copy(), and data.

operator=() [2/4]

void CFastaLoadParams::operator=

(

const CFastaLoadParams &

data

)

Assignment operator for CFastaLoadParams.

Assignment operator for CFastaLoadParams

Definition at line 73 of file fasta_load_params.cpp.

References CFastaLoadParams::Copy(), and data.

operator=() [3/4]

void CGffLoadParams::operator=

(

const CGffLoadParams &

data

)

Assignment operator for CGffLoadParams.

Assignment operator for CGffLoadParams

Definition at line 75 of file gff_load_params.cpp.

References CGffLoadParams::Copy(), and data.

operator=() [4/4]

void CSrcEditParams::operator=

(

const CSrcEditParams &

data

)

Assignment operator for CSrcEditParams.

Assignment operator for CSrcEditParams

Definition at line 73 of file srcedit_params.cpp.

References CSrcEditParams::Copy(), and data.

operator==() [1/5]

bool CGenBankLoadOptionPanel::CAccDescriptor::operator== ( const CAccDescriptor &  ad ) const

inline

Definition at line 87 of file gb_load_option_panel.hpp.

References CGenBankLoadOptionPanel::CAccDescriptor::m_Accession.

operator==() [2/5]

bool CCleanupParams::operator==

(

const CCleanupParams &

data

)

const

Equality operator for CCleanupParams.

Equality operator for CCleanupParams

Definition at line 82 of file cleanup_params.cpp.

References data, and CCleanupParams::m_CleanupMode.

operator==() [3/5]

bool CFastaLoadParams::operator==

(

const CFastaLoadParams &

data

)

const

Equality operator for CFastaLoadParams.

Equality operator for CFastaLoadParams

Definition at line 82 of file fasta_load_params.cpp.

References data, CFastaLoadParams::m_ForceLocalIDs, CFastaLoadParams::m_IgnoreGaps, CFastaLoadParams::m_LowercaseOption, CFastaLoadParams::m_MakeDelta, CFastaLoadParams::m_NoSplit, CFastaLoadParams::m_ReadFirst, CFastaLoadParams::m_SeqType, and CFastaLoadParams::m_SkipInvalid.

operator==() [4/5]

bool CGffLoadParams::operator==

(

const CGffLoadParams &

data

)

const

Equality operator for CGffLoadParams.

Equality operator for CGffLoadParams

Definition at line 84 of file gff_load_params.cpp.

References data, CGffLoadParams::m_FileFormat, CGffLoadParams::m_MapAssembly, CGffLoadParams::m_NameFeatSet, and CGffLoadParams::m_ParseSeqIds.

operator==() [5/5]

bool CSrcEditParams::operator==

(

const CSrcEditParams &

data

)

const

Equality operator for CSrcEditParams.

Equality operator for CSrcEditParams

Definition at line 82 of file srcedit_params.cpp.

PostExecute() [1/12]

bool C5ColObjectLoader::PostExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 118 of file 5col_object_loader.cpp.

References wxT, and CReportLoaderErrors::x_ShowErrorsDlg().

PostExecute() [2/12]

bool CAgpObjectLoader::PostExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 145 of file agp_object_loader.cpp.

References wxT, and CReportLoaderErrors::x_ShowErrorsDlg().

PostExecute() [3/12]

bool CAssemblyObjectLoader::PostExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 172 of file assembly_object_loader.cpp.

References wxT, and CReportLoaderErrors::x_ShowErrorsDlg().

PostExecute() [4/12]

bool CBedObjectLoader::PostExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 170 of file bed_object_loader.cpp.

References CBedObjectLoader::m_Objects, wxT, CReportLoaderErrors::x_ShowErrorsDlg(), and CMappingObjectLoader::x_ShowMappingDlg().

PostExecute() [5/12]

bool CChainLoader::PostExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 85 of file chain_loader.cpp.

References CChainLoader::m_ExecuteUnits.

PostExecute() [6/12]

bool CGBFlatFileObjectLoader::PostExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 171 of file gb_flatfile_object_loader.cpp.

References wxT, and CReportLoaderErrorsEx::x_ShowErrorsDlg().

PostExecute() [7/12]

bool CGBObjectLoader::PostExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 183 of file gb_object_loader.cpp.

References wxT, and CReportLoaderErrors::x_ShowErrorsDlg().

PostExecute() [8/12]

bool CGffObjectLoader::PostExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 198 of file gff_object_loader.cpp.

References CGffObjectLoader::m_Objects, wxT, CReportLoaderErrors::x_ShowErrorsDlg(), and CMappingObjectLoader::x_ShowMappingDlg().

PostExecute() [9/12]

bool CPhyObjectLoader::PostExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 175 of file phy_object_loader.cpp.

References wxT, and CReportLoaderErrors::x_ShowErrorsDlg().

PostExecute() [10/12]

bool CPslObjectLoader::PostExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 124 of file psl_object_loader.cpp.

References CPslObjectLoader::m_Objects, wxT, CReportLoaderErrors::x_ShowErrorsDlg(), and CMappingObjectLoader::x_ShowMappingDlg().

PostExecute() [11/12]

bool CVcfObjectLoader::PostExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 141 of file vcf_object_loader.cpp.

References CVcfObjectLoader::m_Objects, wxT, CReportLoaderErrors::x_ShowErrorsDlg(), and CMappingObjectLoader::x_ShowMappingDlg().

PostExecute() [12/12]

bool CWigObjectLoader::PostExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 209 of file wig_object_loader.cpp.

References CWigObjectLoader::m_Objects, wxT, CReportLoaderErrors::x_ShowErrorsDlg(), and CMappingObjectLoader::x_ShowMappingDlg().

PreExecute() [1/12]

bool C5ColObjectLoader::PreExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 66 of file 5col_object_loader.cpp.

PreExecute() [2/12]

bool CAgpObjectLoader::PreExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 66 of file agp_object_loader.cpp.

PreExecute() [3/12]

bool CAssemblyObjectLoader::PreExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 75 of file assembly_object_loader.cpp.

PreExecute() [4/12]

bool CBedObjectLoader::PreExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 69 of file bed_object_loader.cpp.

PreExecute() [5/12]

bool CChainLoader::PreExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 64 of file chain_loader.cpp.

References CChainLoader::m_ExecuteUnits.

PreExecute() [6/12]

bool CGBFlatFileObjectLoader::PreExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 78 of file gb_flatfile_object_loader.cpp.

PreExecute() [7/12]

bool CGBObjectLoader::PreExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 64 of file gb_object_loader.cpp.

PreExecute() [8/12]

bool CGffObjectLoader::PreExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 71 of file gff_object_loader.cpp.

PreExecute() [9/12]

bool CPhyObjectLoader::PreExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 66 of file phy_object_loader.cpp.

PreExecute() [10/12]

bool CPslObjectLoader::PreExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 66 of file psl_object_loader.cpp.

PreExecute() [11/12]

bool CVcfObjectLoader::PreExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 66 of file vcf_object_loader.cpp.

PreExecute() [12/12]

bool CWigObjectLoader::PreExecute ( )

virtual

Implements IExecuteUnit.

Definition at line 89 of file wig_object_loader.cpp.

RecognizeFormat() [1/22]

bool CGBFlatFileLoadManager::RecognizeFormat ( CFormatGuess::EFormat  fmt )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 224 of file gb_flatfile_load_manager.cpp.

References CFormatGuess::eFlatFileGenbank.

RecognizeFormat() [2/22]

bool CPhyLoader::RecognizeFormat ( CFormatGuess::EFormat  fmt )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 196 of file phy_loader.cpp.

References CFormatGuess::eNewick.

RecognizeFormat() [3/22]

bool CRMLoader::RecognizeFormat ( CFormatGuess::EFormat  fmt )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 183 of file rm_load_manager.cpp.

References CFormatGuess::eRmo.

RecognizeFormat() [4/22]

bool C5ColLoadManager::RecognizeFormat ( CFormatGuess::EFormat  fmt )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 177 of file 5col_load_manager.cpp.

References CFormatGuess::eFiveColFeatureTable.

RecognizeFormat() [5/22]

bool CAgpLoader::RecognizeFormat ( CFormatGuess::EFormat  fmt )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 216 of file agp_loader.cpp.

References CFormatGuess::eAgp.

RecognizeFormat() [6/22]

bool CBedLoadManager::RecognizeFormat ( CFormatGuess::EFormat  fmt )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 217 of file bed_load_manager.cpp.

References CFormatGuess::eBed, and CFormatGuess::eBed15.

RecognizeFormat() [7/22]

bool CColumnarVCFLoaderManager::RecognizeFormat ( CFormatGuess::EFormat  fmt )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 462 of file columnar_vcf_load_manager.cpp.

References CFormatGuess::eVcf.

RecognizeFormat() [8/22]

bool CFASTAFormatLoadManager::RecognizeFormat ( CFormatGuess::EFormat  fmt )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 231 of file fasta_format_load_manager.cpp.

References CFormatGuess::eFasta.

RecognizeFormat() [9/22]

bool CGffLoadManager::RecognizeFormat ( CFormatGuess::EFormat  fmt )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 224 of file gff_load_manager.cpp.

References CFormatGuess::eGff2, CFormatGuess::eGff3, CFormatGuess::eGtf, CFormatGuess::eGtf_POISENED, and CFormatGuess::eGvf.

RecognizeFormat() [10/22]

bool CVCFLoaderManager::RecognizeFormat ( CFormatGuess::EFormat  fmt )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 218 of file vcf_load_manager.cpp.

References CFormatGuess::eVcf.

RecognizeFormat() [11/22]

bool CWigLoadManager::RecognizeFormat ( CFormatGuess::EFormat  fmt )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 218 of file wig_load_manager.cpp.

References CFormatGuess::eWiggle.

RecognizeFormat() [12/22]

bool CGBFlatFileLoadManager::RecognizeFormat ( const wxString &  filename )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 217 of file gb_flatfile_load_manager.cpp.

References CFileExtensions::kGenBank, and CFileExtensions::RecognizeExtension().

RecognizeFormat() [13/22]

bool CPhyLoader::RecognizeFormat ( const wxString &  filename )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 189 of file phy_loader.cpp.

References CFileExtensions::kTree, and CFileExtensions::RecognizeExtension().

RecognizeFormat() [14/22]

bool CRMLoader::RecognizeFormat ( const wxString &  filename )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 176 of file rm_load_manager.cpp.

References CFileExtensions::kTxt, and CFileExtensions::RecognizeExtension().

RecognizeFormat() [15/22]

bool C5ColLoadManager::RecognizeFormat ( const wxString &  filename )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 170 of file 5col_load_manager.cpp.

References CFileExtensions::k5Column, and CFileExtensions::RecognizeExtension().

RecognizeFormat() [16/22]

bool CAgpLoader::RecognizeFormat ( const wxString &  filename )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 209 of file agp_loader.cpp.

References CFileExtensions::kAGP, and CFileExtensions::RecognizeExtension().

RecognizeFormat() [17/22]

bool CBedLoadManager::RecognizeFormat ( const wxString &  filename )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 210 of file bed_load_manager.cpp.

References wxT.

RecognizeFormat() [18/22]

bool CColumnarVCFLoaderManager::RecognizeFormat ( const wxString &  filename )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 455 of file columnar_vcf_load_manager.cpp.

References CFileExtensions::kVCF, and CFileExtensions::RecognizeExtension().

RecognizeFormat() [19/22]

bool CFASTAFormatLoadManager::RecognizeFormat ( const wxString &  filename )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 224 of file fasta_format_load_manager.cpp.

References CFileExtensions::kFASTA, and CFileExtensions::RecognizeExtension().

RecognizeFormat() [20/22]

bool CGffLoadManager::RecognizeFormat ( const wxString &  filename )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 216 of file gff_load_manager.cpp.

References CFileExtensions::kGFF, CFileExtensions::kGTF, and CFileExtensions::RecognizeExtension().

RecognizeFormat() [21/22]

bool CVCFLoaderManager::RecognizeFormat ( const wxString &  filename )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 211 of file vcf_load_manager.cpp.

References CFileExtensions::kVCF, and CFileExtensions::RecognizeExtension().

RecognizeFormat() [22/22]

bool CWigLoadManager::RecognizeFormat ( const wxString &  filename )

virtual

return true if the given file format is supported by this manager

Implements IFileFormatLoaderManager.

Definition at line 211 of file wig_load_manager.cpp.

References wxT.

RegisterCommands() [1/3]

void CViewGraphicFactory::RegisterCommands ( CUICommandRegistry &  , wxFileArtProvider &    )

virtual

called by the framework to give Factory a chance to register commands used by view

Reimplemented from IViewFactory.

Definition at line 718 of file view_graphic.cpp.

References CSeqGraphicWidget::RegisterCommands().

RegisterCommands() [2/3]

void CSequinDesktopViewFactory::RegisterCommands ( CUICommandRegistry &  , wxFileArtProvider &    )

virtual

called by the framework to give Factory a chance to register commands used by view

Reimplemented from IViewFactory.

Definition at line 387 of file sequin_desktop_view.cpp.

RegisterCommands() [3/3]

void CTextViewFactory::RegisterCommands ( CUICommandRegistry &  , wxFileArtProvider &    )

virtual

called by the framework to give Factory a chance to register commands used by view

Reimplemented from IViewFactory.

Definition at line 409 of file text_view.cpp.

References CTextPanel::RegisterCommands().

RegisterIconAliases() [1/5]

void CSeqTextViewFactory::RegisterIconAliases ( wxFileArtProvider &  provider )

virtual

called by the framework to give Factory a chance to register images used by view

Implements IViewFactory.

Definition at line 270 of file seq_text_view.cpp.

References CUIObject::GetIconAlias(), IProjectViewFactory::GetViewTypeDescriptor(), wxFileArtProvider::RegisterFileAlias(), ToWxString(), and wxT.

RegisterIconAliases() [2/5]

void CFeatTableViewFactory::RegisterIconAliases ( wxFileArtProvider &  provider )

virtual

called by the framework to give Factory a chance to register images used by view

Implements IViewFactory.

Definition at line 578 of file view_feattable.cpp.

References CUIObject::GetIconAlias(), IProjectViewFactory::GetViewTypeDescriptor(), wxFileArtProvider::RegisterFileAlias(), ToWxString(), and wxT.

RegisterIconAliases() [3/5]

void CViewGraphicFactory::RegisterIconAliases ( wxFileArtProvider &  provider )

virtual

called by the framework to give Factory a chance to register images used by view

Implements IViewFactory.

Definition at line 711 of file view_graphic.cpp.

References CUIObject::GetIconAlias(), IProjectViewFactory::GetViewTypeDescriptor(), wxFileArtProvider::RegisterFileAlias(), ToWxString(), and wxT.

RegisterIconAliases() [4/5]

void CSequinDesktopViewFactory::RegisterIconAliases ( wxFileArtProvider &  provider )

virtual

called by the framework to give Factory a chance to register images used by view

Implements IViewFactory.

Definition at line 381 of file sequin_desktop_view.cpp.

References CUIObject::GetIconAlias(), IProjectViewFactory::GetViewTypeDescriptor(), wxFileArtProvider::RegisterFileAlias(), ToWxString(), and wxT.

RegisterIconAliases() [5/5]

void CTextViewFactory::RegisterIconAliases ( wxFileArtProvider &  provider )

virtual

called by the framework to give Factory a chance to register images used by view

Implements IViewFactory.

Definition at line 403 of file text_view.cpp.

References CUIObject::GetIconAlias(), IProjectViewFactory::GetViewTypeDescriptor(), wxFileArtProvider::RegisterFileAlias(), ToWxString(), and wxT.

ReportError()

void CAssemblyObjectLoader::ReportError ( const string &  accession, const string &  error  )

virtual

Implements IGencollSvcErrors.

Definition at line 178 of file assembly_object_loader.cpp.

References wxT, and CReportLoaderErrors::x_UpdateHTMLResults().

RestoreDefaults()

void CCleanupPanel::RestoreDefaults ( )

virtual

override in derived classes

Restores the default options for the panel

Implements CAlgoToolManagerParamsPanel.

Definition at line 251 of file cleanup_panel.cpp.

References CCleanupPanel::GetData(), CCleanupParams::Init(), and CCleanupPanel::TransferDataToWindow().

SaveMruAccessions() [1/2]

void CGenBankUILoadManager::SaveMruAccessions

(

)

Definition at line 623 of file gb_ui_data_source.cpp.

References CGenBankUILoadManager::m_OptionPanel, CGenBankUILoadManager::m_RegPath, and CGenBankLoadOptionPanel::SaveMruAccessions().

Referenced by CGenBankUILoadManager::GetTask().

SaveMruAccessions() [2/2]

void CGenBankLoadOptionPanel::SaveMruAccessions

(

const string &

regPath

)

Definition at line 494 of file gb_load_option_panel.cpp.

References CTimeMRUList< T >::Add(), CTime::AsString(), CTimeFormat::eISO8601_DateTimeSec, format, CGuiRegistry::GetInstance(), CTimeMRUList< T >::GetMap(), CTimeFormat::GetPredefined(), CGuiRegistry::GetWriteView(), ITERATE, kMRUTag, kPanelTag, CGenBankLoadOptionPanel::m_AccMRUList, CGenBankLoadOptionPanel::m_Ids, CGenBankLoadOptionPanel::m_NAs, CGenBankLoadOptionPanel::m_ValidTokens, CRegistryWriteView::Set(), and CTime::ToLocalTime().

Referenced by CGenBankUILoadManager::SaveMruAccessions().

SaveSettings() [1/18]

void CCleanupPanel::SaveSettings ( ) const

virtual

override in derived classes

Implements CAlgoToolManagerParamsPanel.

Definition at line 228 of file cleanup_panel.cpp.

References CGuiRegistry::GetInstance(), CGuiRegistry::GetWriteView(), kTableTag, CCleanupPanel::m_ObjectList, CAlgoToolManagerParamsPanel::m_RegPath, CGuiRegistryUtil::MakeKey(), and CwxTableListCtrl::SaveTableSettings().

SaveSettings() [2/18]

void CCleanupParams::SaveSettings ( ) const

virtual

Implements IRegSettings.

Definition at line 121 of file cleanup_params.cpp.

References CGuiRegistry::GetInstance(), CGuiRegistry::GetWriteView(), kCleanupModeTag, CCleanupParams::m_CleanupMode, CCleanupParams::m_RegPath, and CRegistryWriteView::Set().

SaveSettings() [3/18]

void CGBFlatFileLoadManager::SaveSettings ( ) const

virtual

Implements IRegSettings.

Definition at line 247 of file gb_flatfile_load_manager.cpp.

References CGBFlatFileLoadManager::m_Params, and CGBFlatFileLoadParams::SaveSettings().

SaveSettings() [4/18]

void CGenBankUILoadManager::SaveSettings ( ) const

virtual

Implements IRegSettings.

Definition at line 608 of file gb_ui_data_source.cpp.

References CGuiRegistry::GetInstance(), CGuiRegistry::GetWriteView(), kProjectParamsTag, CGenBankUILoadManager::m_OptionPanel, CGenBankUILoadManager::m_ProjectParams, CGenBankUILoadManager::m_RegPath, CGenBankLoadOptionPanel::SaveSettings(), and SProjectSelectorParams::SaveSettings().

SaveSettings() [5/18]

void CFeatTableView::SaveSettings ( ) const

virtual

Implements IRegSettings.

Definition at line 271 of file view_feattable.cpp.

References CGuiRegistry::GetInstance(), CGuiRegistry::GetWriteView(), CFeatTableView::m_FTblWidget, CFeatTableView::m_RegPath, and CwxTableListCtrl::SaveTableSettings().

SaveSettings() [6/18]

void CSrcEditParams::SaveSettings ( ) const

virtual

Implements IRegSettings.

Definition at line 116 of file srcedit_params.cpp.

SaveSettings() [7/18]

void CFastaLoadParams::SaveSettings ( ) const

virtual

IRegSettings.

Implements IRegSettings.

Definition at line 144 of file fasta_load_params.cpp.

References CGuiRegistry::GetInstance(), CGuiRegistry::GetWriteView(), kForceLocalIDsTag, kIgnoreGaps, kLowercaseOptionTag, kMakeDeltaTag, kNoSplit, kReadFirstTag, kSeqTypeTag, kSkipInvalidTag, CFastaLoadParams::m_ForceLocalIDs, CFastaLoadParams::m_IgnoreGaps, CFastaLoadParams::m_LowercaseOption, CFastaLoadParams::m_MakeDelta, CFastaLoadParams::m_NoSplit, CFastaLoadParams::m_ReadFirst, CFastaLoadParams::m_RegPath, CFastaLoadParams::m_SeqType, CFastaLoadParams::m_SkipInvalid, and CRegistryWriteView::Set().

Referenced by CFASTAFormatLoadManager::SaveSettings().

SaveSettings() [8/18]

void CGffLoadParams::SaveSettings ( ) const

virtual

IRegSettings.

Implements IRegSettings.

Definition at line 127 of file gff_load_params.cpp.

References CGuiRegistry::GetInstance(), CGuiRegistry::GetWriteView(), kFileFormat, kMapAssembly, kNameFeatSet, kParseSeqIds, CGffLoadParams::m_FileFormat, CGffLoadParams::m_MapAssembly, CGffLoadParams::m_NameFeatSet, CGffLoadParams::m_ParseSeqIds, CGffLoadParams::m_RegPath, CMapAssemblyParams::SaveSettings(), CRegistryWriteView::Set(), and ToStdString().

Referenced by CGffLoadManager::SaveSettings().

SaveSettings() [9/18]

void CPhyLoader::SaveSettings ( ) const

virtual

Implements IRegSettings.

Definition at line 219 of file phy_loader.cpp.

SaveSettings() [10/18]

void C5ColLoadManager::SaveSettings ( ) const

virtual

Implements IRegSettings.

Definition at line 199 of file 5col_load_manager.cpp.

SaveSettings() [11/18]

void CAgpLoader::SaveSettings ( ) const

virtual

Implements IRegSettings.

Definition at line 240 of file agp_loader.cpp.

References CAgpLoader::m_Params, and CAgpLoadParams::SaveSettings().

SaveSettings() [12/18]

void CBedLoadManager::SaveSettings ( ) const

virtual

Implements IRegSettings.

Definition at line 243 of file bed_load_manager.cpp.

References CBedLoadManager::m_Params, and CBedLoadParams::SaveSettings().

SaveSettings() [13/18]

void CColumnarVCFLoaderManager::SaveSettings ( ) const

virtual

Implements IRegSettings.

Definition at line 487 of file columnar_vcf_load_manager.cpp.

References CColumnarVCFLoaderManager::m_AssemblyPanel, CColumnarVCFLoaderManager::m_RegPath, and CVcfAssemblySelectionPanel::SaveSettings().

SaveSettings() [14/18]

void CFASTAFormatLoadManager::SaveSettings ( ) const

virtual

Implements IRegSettings.

Definition at line 255 of file fasta_format_load_manager.cpp.

References CFASTAFormatLoadManager::m_Params, and CFastaLoadParams::SaveSettings().

SaveSettings() [15/18]

void CGffLoadManager::SaveSettings ( ) const

virtual

Implements IRegSettings.

Definition at line 256 of file gff_load_manager.cpp.

References CGffLoadManager::m_Params, and CGffLoadParams::SaveSettings().

SaveSettings() [16/18]

void CVCFLoaderManager::SaveSettings ( ) const

virtual

Implements IRegSettings.

Definition at line 243 of file vcf_load_manager.cpp.

References CVCFLoaderManager::m_Params, and CBedLoadParams::SaveSettings().

SaveSettings() [17/18]

void CWigLoadManager::SaveSettings ( ) const

virtual

Implements IRegSettings.

Definition at line 242 of file wig_load_manager.cpp.

References CWigLoadManager::m_Params, and CWigLoadParams::SaveSettings().

SaveSettings() [18/18]

void CGenBankLoadOptionPanel::SaveSettings

(

const string &

regPath

)

Definition at line 481 of file gb_load_option_panel.cpp.

References CGenBankLoadOptionPanel::GetInput(), CGuiRegistry::GetInstance(), CGuiRegistry::GetWriteView(), input(), kIdsInputTag, kPanelTag, CRegistryWriteView::Set(), and NStr::URLEncode().

Referenced by CGenBankUILoadManager::SaveSettings(), and CGBLoadWizard::SaveSettings().

SaveSettingsAtProject()

void CViewGraphic::SaveSettingsAtProject ( objects::CGBProjectHandle &  project ) const

virtual

Implements IViewSettingsAtProject.

Definition at line 855 of file view_graphic.cpp.

References CSeq_id::eFasta, CRange_Base::GetFrom(), CUIObject::GetHelpId(), CSeqGraphicWidget::GetMarkers(), CRange_Base::GetTo(), CViewGraphic::GetTypeDescriptor(), CSeqGraphicWidget::GetVisibleSeqRange(), CGraphicPanel::GetWidget(), Info(), CSeqGraphicWidget::IsDirty(), LOG_POST, CViewGraphic::m_GraphicPanel, CViewGraphic::m_SeqId, NStr::NumericToString(), and CSeqGraphicWidget::SetDirty().

SeqLocToString()

string CFeatureSearchJob::SeqLocToString

(

const objects::CSeq_loc &

loc

)

Definition at line 480 of file feature_search_tool.cpp.

References CSeq_loc_Base::e_Whole, COpenRange< Position >::Empty(), eNa_strand_minus, CRange_Base::GetFrom(), CSeq_loc::GetId(), CSeq_loc::GetLabel(), CSeq_loc::GetStrand(), CRange_Base::GetTo(), CSeq_loc::GetTotalRange(), out(), NStr::UIntToString(), and CSeq_loc_Base::Which().

Referenced by CFeatureSearchJob::x_AddFeatToResults().

SetCleanupMode()

void CCleanupParams::SetCleanupMode ( int  value )

inline

Definition at line 86 of file cleanup_params.hpp.

References CCleanupParams::m_CleanupMode, and rapidjson::value.

SetData() [1/4]

void CCleanupPanel::SetData ( const CCleanupParams &  data )

inline

Definition at line 114 of file cleanup_panel.hpp.

References data, and CCleanupPanel::m_data.

Referenced by CCleanupTool::x_CreateParamsPanelIfNeeded().

SetData() [2/4]

void CFASTAFormatParamsPanel::SetData ( const CFastaLoadParams &  data )

inline

Definition at line 92 of file fasta_format_params_panel.hpp.

References data, and CFASTAFormatParamsPanel::m_data.

Referenced by CFASTAFormatLoadManager::x_GetParamsPanel().

SetData() [3/4]

void CGffParamsPanel::SetData ( const CGffLoadParams &  data )

inline

Definition at line 116 of file gff_params_panel.hpp.

References data, and CGffParamsPanel::m_data.

Referenced by CGffLoadManager::x_GetParamsPanel().

SetData() [4/4]

void CResolveIdDlg::SetData	(	const TData &	data,
		TIdMap &	map,
		objects::CScope &	scope
	)

Definition at line 368 of file resolve_id_dlg.cpp.

References data, and CResolveIdDlg::m_Grid.

Referenced by CMappingObjectLoader::x_ShowMappingDlg().

SetDictionary()

virtual void CEntrezSearchForm::SetDictionary ( list< string > *  )

inlinevirtual

Reimplemented from CSearchFormBase.

Definition at line 116 of file entrez_search_tool.hpp.

SetFileFormat()

void CGffLoadParams::SetFileFormat ( int  value )

inline

Definition at line 86 of file gff_load_params.hpp.

References CGffLoadParams::m_FileFormat, and rapidjson::value.

SetFilenames() [1/11]

void CGBFlatFileLoadManager::SetFilenames ( const vector< wxString > &  filenames )

virtual

initilize the manager with the given filenames

Implements IFileFormatLoaderManager.

Definition at line 201 of file gb_flatfile_load_manager.cpp.

References filenames, and CGBFlatFileLoadManager::m_FileNames.

SetFilenames() [2/11]

void CPhyLoader::SetFilenames ( const vector< wxString > &  filenames )

virtual

initilize the manager with the given filenames

Implements IFileFormatLoaderManager.

Definition at line 173 of file phy_loader.cpp.

References filenames, and CPhyLoader::m_FileNames.

SetFilenames() [3/11]

void CRMLoader::SetFilenames ( const vector< wxString > &  filenames )

virtual

initilize the manager with the given filenames

Implements IFileFormatLoaderManager.

Definition at line 160 of file rm_load_manager.cpp.

References filenames, and CRMLoader::m_FileNames.

SetFilenames() [4/11]

void C5ColLoadManager::SetFilenames ( const vector< wxString > &  filenames )

virtual

initilize the manager with the given filenames

Implements IFileFormatLoaderManager.

Definition at line 154 of file 5col_load_manager.cpp.

References filenames, and C5ColLoadManager::m_FileNames.

SetFilenames() [5/11]

void CAgpLoader::SetFilenames ( const vector< wxString > &  filenames )

virtual

initilize the manager with the given filenames

Implements IFileFormatLoaderManager.

Definition at line 194 of file agp_loader.cpp.

References filenames, and CAgpLoader::m_FileNames.

SetFilenames() [6/11]

void CBedLoadManager::SetFilenames ( const vector< wxString > &  filenames )

virtual

initilize the manager with the given filenames

Implements IFileFormatLoaderManager.

Definition at line 194 of file bed_load_manager.cpp.

References filenames, and CBedLoadManager::m_FileNames.

SetFilenames() [7/11]

void CColumnarVCFLoaderManager::SetFilenames ( const vector< wxString > &  filenames )

virtual

initilize the manager with the given filenames

Implements IFileFormatLoaderManager.

Definition at line 439 of file columnar_vcf_load_manager.cpp.

References filenames, and CColumnarVCFLoaderManager::m_FileNames.

SetFilenames() [8/11]

void CFASTAFormatLoadManager::SetFilenames ( const vector< wxString > &  filenames )

virtual

initilize the manager with the given filenames

Implements IFileFormatLoaderManager.

Definition at line 208 of file fasta_format_load_manager.cpp.

References filenames, and CFASTAFormatLoadManager::m_FileNames.

SetFilenames() [9/11]

void CGffLoadManager::SetFilenames ( const vector< wxString > &  filenames )

virtual

initilize the manager with the given filenames

Implements IFileFormatLoaderManager.

Definition at line 200 of file gff_load_manager.cpp.

References filenames, and CGffLoadManager::m_FileNames.

SetFilenames() [10/11]

void CVCFLoaderManager::SetFilenames ( const vector< wxString > &  filenames )

virtual

initilize the manager with the given filenames

Implements IFileFormatLoaderManager.

Definition at line 195 of file vcf_load_manager.cpp.

References filenames, and CVCFLoaderManager::m_FileNames.

SetFilenames() [11/11]

void CWigLoadManager::SetFilenames ( const vector< wxString > &  filenames )

virtual

initilize the manager with the given filenames

Implements IFileFormatLoaderManager.

Definition at line 195 of file wig_load_manager.cpp.

References filenames, and CWigLoadManager::m_FileNames.

SetForceLocalIDs()

void CFastaLoadParams::SetForceLocalIDs ( bool  value )

inline

Definition at line 81 of file fasta_load_params.hpp.

References CFastaLoadParams::m_ForceLocalIDs, and rapidjson::value.

SetIgnoreGaps()

void CFastaLoadParams::SetIgnoreGaps ( bool  value )

inline

Definition at line 84 of file fasta_load_params.hpp.

References CFastaLoadParams::m_IgnoreGaps, and rapidjson::value.

SetInput()

void CGenBankLoadOptionPanel::SetInput

(

const string &

input

)

Definition at line 199 of file gb_load_option_panel.cpp.

References _ASSERT, input(), CGenBankLoadOptionPanel::m_AccInput, and ToWxString().

Referenced by CGenBankLoadOptionPanel::LoadSettings().

SetLowercaseOption()

void CFastaLoadParams::SetLowercaseOption ( int  value )

inline

Definition at line 87 of file fasta_load_params.hpp.

References CFastaLoadParams::m_LowercaseOption, and rapidjson::value.

SetMainValue()

virtual void CEntrezSearchForm::SetMainValue ( string  )

inlinevirtual

Reimplemented from CSearchFormBase.

Definition at line 117 of file entrez_search_tool.hpp.

SetMakeDelta()

void CFastaLoadParams::SetMakeDelta ( bool  value )

inline

Definition at line 90 of file fasta_load_params.hpp.

References CFastaLoadParams::m_MakeDelta, and rapidjson::value.

SetMapAssembly()

void CGffLoadParams::SetMapAssembly ( CMapAssemblyParams  value )

inline

Definition at line 89 of file gff_load_params.hpp.

References CGffLoadParams::m_MapAssembly, and rapidjson::value.

Referenced by CGffParamsPanel::TransferDataFromWindow().

SetNameFeatSet()

void CGffLoadParams::SetNameFeatSet ( wxString  value )

inline

Definition at line 92 of file gff_load_params.hpp.

References CGffLoadParams::m_NameFeatSet, and rapidjson::value.

SetNoSplit()

void CFastaLoadParams::SetNoSplit ( bool  value )

inline

Definition at line 93 of file fasta_load_params.hpp.

References CFastaLoadParams::m_NoSplit, and rapidjson::value.

SetObjects() [1/3]

TConstScopedObjects& CCleanupParams::SetObjects ( void  )

inline

Definition at line 82 of file cleanup_params.hpp.

References CCleanupParams::m_Objects.

SetObjects() [2/3]

TConstScopedObjects& CSrcEditParams::SetObjects ( void  )

inline

Definition at line 82 of file srcedit_params.hpp.

References CSrcEditParams::m_Objects.

SetObjects() [3/3]

void CCleanupPanel::SetObjects ( TConstScopedObjects *  objects )

inline

Definition at line 123 of file cleanup_panel.hpp.

References CCleanupPanel::m_InputObjects.

Referenced by CCleanupTool::x_CreateParamsPanelIfNeeded().

SetOrigObject()

void CViewGraphic::SetOrigObject ( SConstScopedObject &  obj )

virtual

Reimplemented from IProjectView.

Definition at line 512 of file view_graphic.cpp.

References CConstRef< C, Locker >::GetPointer(), CGraphicPanel::GetWidget(), CSeqGraphicWidget::InitDataSource(), CViewGraphic::m_GraphicPanel, CViewGraphic::m_SeqId, SConstScopedObject::object, CProjectViewBase::RefreshViewWindow(), CConstRef< C, Locker >::Reset(), CSeqGraphicWidget::SetInputObject(), and CProjectViewBase::x_UpdateContentLabel().

SetParentWindow() [1/12]

void CGBFlatFileLoadManager::SetParentWindow ( wxWindow *  parent )

virtual

Implements IToolWizard.

Definition at line 93 of file gb_flatfile_load_manager.cpp.

References CGBFlatFileLoadManager::m_ParentWindow.

SetParentWindow() [2/12]

void CGenBankUILoadManager::SetParentWindow ( wxWindow *  parent )

virtual

Implements IUIToolManager.

Definition at line 469 of file gb_ui_data_source.cpp.

References CGenBankUILoadManager::m_ParentWindow.

SetParentWindow() [3/12]

void CPhyLoader::SetParentWindow ( wxWindow *  parent )

virtual

Implements IToolWizard.

Definition at line 79 of file phy_loader.cpp.

References CPhyLoader::m_ParentWindow.

SetParentWindow() [4/12]

void CRMLoader::SetParentWindow ( wxWindow *  parent )

virtual

Implements IToolWizard.

Definition at line 81 of file rm_load_manager.cpp.

References CRMLoader::m_ParentWindow.

SetParentWindow() [5/12]

void C5ColLoadManager::SetParentWindow ( wxWindow *  parent )

virtual

Implements IToolWizard.

Definition at line 78 of file 5col_load_manager.cpp.

SetParentWindow() [6/12]

void CAgpLoader::SetParentWindow ( wxWindow *  parent )

virtual

Implements IToolWizard.

Definition at line 85 of file agp_loader.cpp.

References CAgpLoader::m_ParentWindow.

SetParentWindow() [7/12]

void CBedLoadManager::SetParentWindow ( wxWindow *  parent )

virtual

Implements IToolWizard.

Definition at line 86 of file bed_load_manager.cpp.

References CBedLoadManager::m_ParentWindow.

SetParentWindow() [8/12]

void CColumnarVCFLoaderManager::SetParentWindow ( wxWindow *  parent )

virtual

Implements IToolWizard.

Definition at line 166 of file columnar_vcf_load_manager.cpp.

References CColumnarVCFLoaderManager::m_ParentWindow.

SetParentWindow() [9/12]

void CFASTAFormatLoadManager::SetParentWindow ( wxWindow *  parent )

virtual

Implements IToolWizard.

Definition at line 99 of file fasta_format_load_manager.cpp.

References CFASTAFormatLoadManager::m_ParentWindow.

SetParentWindow() [10/12]

void CGffLoadManager::SetParentWindow ( wxWindow *  parent )

virtual

Implements IToolWizard.

Definition at line 89 of file gff_load_manager.cpp.

References CGffLoadManager::m_ParentWindow.

SetParentWindow() [11/12]

void CVCFLoaderManager::SetParentWindow ( wxWindow *  parent )

virtual

Implements IToolWizard.

Definition at line 87 of file vcf_load_manager.cpp.

References CVCFLoaderManager::m_ParentWindow.

SetParentWindow() [12/12]

void CWigLoadManager::SetParentWindow ( wxWindow *  parent )

virtual

Implements IToolWizard.

Definition at line 86 of file wig_load_manager.cpp.

References CWigLoadManager::m_ParentWindow.

SetParseSeqIds()

void CGffLoadParams::SetParseSeqIds ( int  value )

inline

Definition at line 95 of file gff_load_params.hpp.

References CGffLoadParams::m_ParseSeqIds, and rapidjson::value.

Referenced by CGffParamsPanel::x_SetParseSeqId().

SetPosition() [1/2]

bool CTextView::SetPosition ( const objects::CBioseq_Handle &  h, const CObject *  object  )

virtual

Implements IFlatFileCtrl.

Definition at line 313 of file text_view.cpp.

References CTextView::m_Window, and IFlatFileCtrl::SetPosition().

SetPosition() [2/2]

bool CTextView::SetPosition ( const string &  seq, const CObject *  object  )

virtual

IFlatFileCtrl implementation.

Implements IFlatFileCtrl.

Definition at line 307 of file text_view.cpp.

References CTextView::m_Window, and IFlatFileCtrl::SetPosition().

SetPrevPage() [1/8]

virtual void CGBFlatFileLoadManager::SetPrevPage ( IWizardPage *  )

inlinevirtual

Sets a wizard page which should show before the first page of the tool.

Reimplemented from IToolWizard.

Definition at line 90 of file gb_flatfile_load_manager.hpp.

References CGBFlatFileLoadManager::m_OptionsPage, and CWizardPage::SetPrevPage().

SetPrevPage() [2/8]

virtual void CAgpLoader::SetPrevPage ( IWizardPage *  )

inlinevirtual

Sets a wizard page which should show before the first page of the tool.

Reimplemented from IToolWizard.

Definition at line 95 of file agp_loader.hpp.

References CAgpLoader::m_OptionsPage, and CWizardPage::SetPrevPage().

SetPrevPage() [3/8]

virtual void CBedLoadManager::SetPrevPage ( IWizardPage *  )

inlinevirtual

Sets a wizard page which should show before the first page of the tool.

Reimplemented from IToolWizard.

Definition at line 95 of file bed_load_manager.hpp.

References CBedLoadManager::m_OptionsPage, and CWizardPage::SetPrevPage().

SetPrevPage() [4/8]

virtual void CColumnarVCFLoaderManager::SetPrevPage ( IWizardPage *  )

inlinevirtual

Sets a wizard page which should show before the first page of the tool.

Reimplemented from IToolWizard.

Definition at line 99 of file columnar_vcf_load_manager.hpp.

SetPrevPage() [5/8]

virtual void CFASTAFormatLoadManager::SetPrevPage ( IWizardPage *  )

inlinevirtual

Sets a wizard page which should show before the first page of the tool.

Reimplemented from IToolWizard.

Definition at line 94 of file fasta_format_load_manager.hpp.

References CFASTAFormatLoadManager::m_OptionsPage, and CWizardPage::SetPrevPage().

SetPrevPage() [6/8]

virtual void CGffLoadManager::SetPrevPage ( IWizardPage *  )

inlinevirtual

Sets a wizard page which should show before the first page of the tool.

Reimplemented from IToolWizard.

Definition at line 98 of file gff_load_manager.hpp.

References CGffLoadManager::m_OptionsPage, and CWizardPage::SetPrevPage().

SetPrevPage() [7/8]

virtual void CVCFLoaderManager::SetPrevPage ( IWizardPage *  )

inlinevirtual

Sets a wizard page which should show before the first page of the tool.

Reimplemented from IToolWizard.

Definition at line 93 of file vcf_load_manager.hpp.

References CVCFLoaderManager::m_OptionsPage, and CWizardPage::SetPrevPage().

SetPrevPage() [8/8]

virtual void CWigLoadManager::SetPrevPage ( IWizardPage *  )

inlinevirtual

Sets a wizard page which should show before the first page of the tool.

Reimplemented from IToolWizard.

Definition at line 95 of file wig_load_manager.hpp.

References CWigLoadManager::m_OptionsPage, and CWizardPage::SetPrevPage().

SetReadFirst()

void CFastaLoadParams::SetReadFirst ( bool  value )

inline

Definition at line 96 of file fasta_load_params.hpp.

References CFastaLoadParams::m_ReadFirst, and rapidjson::value.

SetRegistryPath() [1/16]

void CCleanupParams::SetRegistryPath ( const string &  path )

virtual

IRegSettings.

Implements IRegSettings.

Definition at line 116 of file cleanup_params.cpp.

References CCleanupParams::m_RegPath.

SetRegistryPath() [2/16]

void CGBFlatFileLoadManager::SetRegistryPath ( const string &  path )

virtual

Implements IRegSettings.

Definition at line 241 of file gb_flatfile_load_manager.cpp.

References CGBFlatFileLoadManager::m_Params, CGBFlatFileLoadManager::m_RegPath, and CGBFlatFileLoadParams::SetRegistryPath().

SetRegistryPath() [3/16]

void CGenBankUILoadManager::SetRegistryPath ( const string &  path )

virtual

Implements IRegSettings.

Definition at line 600 of file gb_ui_data_source.cpp.

References CGenBankUILoadManager::m_RegPath.

SetRegistryPath() [4/16]

void CSrcEditParams::SetRegistryPath ( const string &  path )

virtual

IRegSettings.

Implements IRegSettings.

Definition at line 111 of file srcedit_params.cpp.

References CSrcEditParams::m_RegPath.

SetRegistryPath() [5/16]

virtual void CFastaLoadParams::SetRegistryPath ( const string &  path )

inlinevirtual

IRegSettings.

Implements IRegSettings.

Definition at line 75 of file fasta_load_params.hpp.

References CFastaLoadParams::m_RegPath.

Referenced by CFASTAFormatLoadManager::SetRegistryPath().

SetRegistryPath() [6/16]

virtual void CGffLoadParams::SetRegistryPath ( const string &  path )

inlinevirtual

IRegSettings.

Implements IRegSettings.

Definition at line 80 of file gff_load_params.hpp.

References CGffLoadParams::m_RegPath.

Referenced by CGffLoadManager::SetRegistryPath().

SetRegistryPath() [7/16]

void CPhyLoader::SetRegistryPath ( const string &  path )

virtual

Implements IRegSettings.

Definition at line 214 of file phy_loader.cpp.

References CPhyLoader::m_RegPath.

SetRegistryPath() [8/16]

void C5ColLoadManager::SetRegistryPath ( const string &  path )

virtual

Implements IRegSettings.

Definition at line 194 of file 5col_load_manager.cpp.

References C5ColLoadManager::m_RegPath.

SetRegistryPath() [9/16]

void CAgpLoader::SetRegistryPath ( const string &  path )

virtual

Implements IRegSettings.

Definition at line 234 of file agp_loader.cpp.

References CAgpLoader::m_Params, CAgpLoader::m_RegPath, and CAgpLoadParams::SetRegistryPath().

SetRegistryPath() [10/16]

void CBedLoadManager::SetRegistryPath ( const string &  path )

virtual

Implements IRegSettings.

Definition at line 237 of file bed_load_manager.cpp.

References CBedLoadManager::m_Params, CBedLoadManager::m_RegPath, and CBedLoadParams::SetRegistryPath().

SetRegistryPath() [11/16]

void CColumnarVCFLoaderManager::SetRegistryPath ( const string &  path )

virtual

Implements IRegSettings.

Definition at line 480 of file columnar_vcf_load_manager.cpp.

References CColumnarVCFLoaderManager::m_RegPath.

SetRegistryPath() [12/16]

void CFASTAFormatLoadManager::SetRegistryPath ( const string &  path )

virtual

Implements IRegSettings.

Definition at line 249 of file fasta_format_load_manager.cpp.

References CFASTAFormatLoadManager::m_Params, CFASTAFormatLoadManager::m_RegPath, and CFastaLoadParams::SetRegistryPath().

SetRegistryPath() [13/16]

void CGffLoadManager::SetRegistryPath ( const string &  path )

virtual

Implements IRegSettings.

Definition at line 250 of file gff_load_manager.cpp.

References CGffLoadManager::m_Params, CGffLoadManager::m_RegPath, and CGffLoadParams::SetRegistryPath().

SetRegistryPath() [14/16]

void CVCFLoaderManager::SetRegistryPath ( const string &  path )

virtual

Implements IRegSettings.

Definition at line 237 of file vcf_load_manager.cpp.

References CVCFLoaderManager::m_Params, CVCFLoaderManager::m_RegPath, and CBedLoadParams::SetRegistryPath().

SetRegistryPath() [15/16]

void CWigLoadManager::SetRegistryPath ( const string &  path )

virtual

Implements IRegSettings.

Definition at line 236 of file wig_load_manager.cpp.

References CWigLoadManager::m_Params, CWigLoadManager::m_RegPath, and CWigLoadParams::SetRegistryPath().

SetRegistryPath() [16/16]

void CFeatTableView::SetRegistryPath ( const string &  reg_path )

virtual

Implements IRegSettings.

Definition at line 522 of file view_feattable.cpp.

References CFeatTableView::m_RegPath.

SetReleaseType()

void CEntrezSearchJob::SetReleaseType ( xml::node &  ds )

protected

Adds an additional child node, indicating the release type (RefSeq or GenBank)

Definition at line 330 of file entrez_search_tool.cpp.

References xml::node::end(), xml::node::find(), NStr::Find(), xml::node::get_content(), xml::node::insert(), and NPOS.

Referenced by CEntrezSearchJob::x_DoSearch().

SetSeqType()

void CFastaLoadParams::SetSeqType ( int  value )

inline

Definition at line 99 of file fasta_load_params.hpp.

References CFastaLoadParams::m_SeqType, and rapidjson::value.

SetServiceLocator() [1/13]

void CGenBankUIDataSource::SetServiceLocator ( IServiceLocator *  locator )

virtual

Implements IServiceLocatorConsumer.

Definition at line 135 of file gb_ui_data_source.cpp.

References CGenBankUIDataSource::m_SrvLocator.

SetServiceLocator() [2/13]

void CGBFlatFileLoadManager::SetServiceLocator ( IServiceLocator *  srv_locator )

virtual

Sets / unsets Service Locator.

Tool Manager can use the locator to obtain the services necessary services.

Implements IUIToolManager.

Definition at line 87 of file gb_flatfile_load_manager.cpp.

References CGBFlatFileLoadManager::m_SrvLocator.

SetServiceLocator() [3/13]

void CGenBankUILoadManager::SetServiceLocator ( IServiceLocator *  srv_locator )

virtual

Sets / unsets Service Locator.

Tool Manager can use the locator to obtain the services necessary services.

Implements IUIToolManager.

Definition at line 463 of file gb_ui_data_source.cpp.

References CGenBankUILoadManager::m_SrvLocator.

SetServiceLocator() [4/13]

void CPhyLoader::SetServiceLocator ( IServiceLocator *  srv_locator )

virtual

Sets / unsets Service Locator.

Tool Manager can use the locator to obtain the services necessary services.

Implements IUIToolManager.

Definition at line 73 of file phy_loader.cpp.

References CPhyLoader::m_SrvLocator.

SetServiceLocator() [5/13]

void CRMLoader::SetServiceLocator ( IServiceLocator *  srv_locator )

virtual

Sets / unsets Service Locator.

Tool Manager can use the locator to obtain the services necessary services.

Implements IUIToolManager.

Definition at line 75 of file rm_load_manager.cpp.

References CRMLoader::m_SrvLocator.

SetServiceLocator() [6/13]

void C5ColLoadManager::SetServiceLocator ( IServiceLocator *  srv_locator )

virtual

Sets / unsets Service Locator.

Tool Manager can use the locator to obtain the services necessary services.

Implements IUIToolManager.

Definition at line 72 of file 5col_load_manager.cpp.

References C5ColLoadManager::m_SrvLocator.

SetServiceLocator() [7/13]

void CAgpLoader::SetServiceLocator ( IServiceLocator *  srv_locator )

virtual

Sets / unsets Service Locator.

Tool Manager can use the locator to obtain the services necessary services.

Implements IUIToolManager.

Definition at line 79 of file agp_loader.cpp.

References CAgpLoader::m_SrvLocator.

SetServiceLocator() [8/13]

void CBedLoadManager::SetServiceLocator ( IServiceLocator *  srv_locator )

virtual

Sets / unsets Service Locator.

Tool Manager can use the locator to obtain the services necessary services.

Implements IUIToolManager.

Definition at line 80 of file bed_load_manager.cpp.

References CBedLoadManager::m_SrvLocator.

SetServiceLocator() [9/13]

void CColumnarVCFLoaderManager::SetServiceLocator ( IServiceLocator *  srv_locator )

virtual

Sets / unsets Service Locator.

Tool Manager can use the locator to obtain the services necessary services.

Implements IUIToolManager.

Definition at line 160 of file columnar_vcf_load_manager.cpp.

References CColumnarVCFLoaderManager::m_SrvLocator.

SetServiceLocator() [10/13]

void CFASTAFormatLoadManager::SetServiceLocator ( IServiceLocator *  srv_locator )

virtual

Sets / unsets Service Locator.

Tool Manager can use the locator to obtain the services necessary services.

Implements IUIToolManager.

Definition at line 93 of file fasta_format_load_manager.cpp.

References CFASTAFormatLoadManager::m_SrvLocator.

SetServiceLocator() [11/13]

void CGffLoadManager::SetServiceLocator ( IServiceLocator *  srv_locator )

virtual

Sets / unsets Service Locator.

Tool Manager can use the locator to obtain the services necessary services.

Implements IUIToolManager.

Definition at line 83 of file gff_load_manager.cpp.

References CGffLoadManager::m_SrvLocator.

SetServiceLocator() [12/13]

void CVCFLoaderManager::SetServiceLocator ( IServiceLocator *  srv_locator )

virtual

Sets / unsets Service Locator.

Tool Manager can use the locator to obtain the services necessary services.

Implements IUIToolManager.

Definition at line 81 of file vcf_load_manager.cpp.

References CVCFLoaderManager::m_SrvLocator.

SetServiceLocator() [13/13]

void CWigLoadManager::SetServiceLocator ( IServiceLocator *  srv_locator )

virtual

Sets / unsets Service Locator.

Tool Manager can use the locator to obtain the services necessary services.

Implements IUIToolManager.

Definition at line 80 of file wig_load_manager.cpp.

References CWigLoadManager::m_SrvLocator.

SetSkipInvalid()

void CFastaLoadParams::SetSkipInvalid ( bool  value )

inline

Definition at line 102 of file fasta_load_params.hpp.

References CFastaLoadParams::m_SkipInvalid, and rapidjson::value.

SetWorkbench()

void CViewGraphic::SetWorkbench ( IWorkbench *  workbench )

virtual

IView implementation.

Reimplemented from CProjectView.

Definition at line 635 of file view_graphic.cpp.

References IServiceLocator::GetServiceByType(), CProjectViewBase::m_Workbench, and CProjectView::SetWorkbench().

ShowToolTips() [1/5]

bool CCleanupPanel::ShowToolTips ( )

static

Should we show tooltips?

Should we show tooltips?

Definition at line 161 of file cleanup_panel.cpp.

ShowToolTips() [2/5]

bool CFASTAFormatParamsPanel::ShowToolTips ( )

static

Definition at line 169 of file fasta_format_params_panel.cpp.

ShowToolTips() [3/5]

bool CGenBankLoadOptionPanel::ShowToolTips ( )

static

Definition at line 574 of file gb_load_option_panel.cpp.

ShowToolTips() [4/5]

bool CGffParamsPanel::ShowToolTips ( )

static

Should we show tooltips?

Should we show tooltips?

Definition at line 228 of file gff_params_panel.cpp.

Referenced by CGffParamsPanel::CreateControls().

ShowToolTips() [5/5]

bool CResolveIdDlg::ShowToolTips ( )

static

Should we show tooltips?

Should we show tooltips?

Definition at line 399 of file resolve_id_dlg.cpp.

ShowView() [1/2]

void CSequinDesktopView::ShowView ( const string &  viewName, FWindowFactory  widgetFactory, TConstScopedObjects &  objects, bool  bFloat  )

virtual

Implements IGuiWidgetHost.

Definition at line 281 of file sequin_desktop_view.cpp.

References IServiceLocator::GetServiceByType(), and CProjectViewBase::m_Workbench.

ShowView() [2/2]

void CTextView::ShowView ( const string &  viewName, FWindowFactory  widgetFactory, TConstScopedObjects &  objects, bool  bFloat  )

virtual

Implements IGuiWidgetHost.

Definition at line 350 of file text_view.cpp.

References IServiceLocator::GetServiceByType(), and CProjectViewBase::m_Workbench.

SKozakPattern()

COrfSearchForm::SKozakPattern::SKozakPattern ( const string &  name, const string &  regexp, int  codon_pos  )

inline

Definition at line 127 of file orf_search_tool.hpp.

TestInputObjects() [1/5]

int CSeqTextViewFactory::TestInputObjects ( TConstScopedObjects &  objects )

virtual

tests input objects (not using object conversion) and returns a combination of ETestResult flags better name is IsCompatibleWith()

Implements IProjectViewFactory.

Definition at line 306 of file seq_text_view.cpp.

References IProjectViewFactory::fCanShowAll, IProjectViewFactory::fCanShowIfConverted, IProjectViewFactory::fCanShowNone, IProjectViewFactory::fCanShowSeparated, IProjectViewFactory::fCanShowSome, i, CSeqTextViewFactory::IsCompatibleWith(), and CSeqTextViewFactory::x_NeedsConversion().

TestInputObjects() [2/5]

int CFeatTableViewFactory::TestInputObjects ( TConstScopedObjects &  objects )

virtual

tests input objects (not using object conversion) and returns a combination of ETestResult flags better name is IsCompatibleWith()

Implements IProjectViewFactory.

Definition at line 643 of file view_feattable.cpp.

References IProjectViewFactory::fCanShowAll, IProjectViewFactory::fCanShowIfConverted, IProjectViewFactory::fCanShowNone, IProjectViewFactory::fCanShowSeparated, IProjectViewFactory::fCanShowSome, i, CFeatTableViewFactory::IsCompatibleWith(), and CFeatTableViewFactory::x_NeedsConversion().

TestInputObjects() [3/5]

int CViewGraphicFactory::TestInputObjects ( TConstScopedObjects &  objects )

virtual

tests input objects (not using object conversion) and returns a combination of ETestResult flags better name is IsCompatibleWith()

Implements IProjectViewFactory.

Definition at line 779 of file view_graphic.cpp.

References IProjectViewFactory::fCanShowAll, IProjectViewFactory::fCanShowIfConverted, IProjectViewFactory::fCanShowNone, IProjectViewFactory::fCanShowSeparated, IProjectViewFactory::fCanShowSome, i, CViewGraphicFactory::IsCompatibleWith(), and CViewGraphicFactory::x_NeedsConversion().

TestInputObjects() [4/5]

int CSequinDesktopViewFactory::TestInputObjects ( TConstScopedObjects &  objects )

virtual

tests input objects (not using object conversion) and returns a combination of ETestResult flags better name is IsCompatibleWith()

Implements IProjectViewFactory.

Definition at line 409 of file sequin_desktop_view.cpp.

References IProjectViewFactory::fCanShowAll, IProjectViewFactory::fCanShowSeparated, IProjectViewFactory::fCanShowSome, and i.

TestInputObjects() [5/5]

int CTextViewFactory::TestInputObjects ( TConstScopedObjects &  objects )

virtual

tests input objects (not using object conversion) and returns a combination of ETestResult flags better name is IsCompatibleWith()

Implements IProjectViewFactory.

Definition at line 432 of file text_view.cpp.

References IProjectViewFactory::fCanShowAll, IProjectViewFactory::fCanShowSeparated, IProjectViewFactory::fCanShowSome, and i.

Token()

CGenBankLoadOptionPanel::Token::Token ( )

inline

Definition at line 164 of file gb_load_option_panel.hpp.

ToString() [1/8]

virtual string CSNPSearchQuery::ToString ( ) const

inlinevirtual

Prepare a string representation of a query (for logging and debugging)

Implements IDMSearchQuery.

Definition at line 95 of file snp_search_tool.hpp.

References CSNPSearchQuery::m_Terms.

ToString() [2/8]

virtual string CComponentSearchQuery::ToString ( ) const

inlinevirtual

Prepare a string representation of a query (for logging and debugging)

Implements IDMSearchQuery.

Definition at line 93 of file component_search_tool.hpp.

References CComponentSearchQuery::GetIds().

ToString() [3/8]

string CCpgSearchQuery::ToString ( ) const

virtual

Prepare a string representation of a query (for logging and debugging)

Implements IDMSearchQuery.

Definition at line 269 of file cpg_search_tool.cpp.

References CCpgSearchQuery::m_AdjMergeThreshold, CCpgSearchQuery::m_MinGC, CCpgSearchQuery::m_MinLenOfIsland, CCpgSearchQuery::m_MinPercentage, and CCpgSearchQuery::m_SizeOfSlidingWindow.

ToString() [4/8]

virtual string CEntrezSearchQuery::ToString ( ) const

inlinevirtual

Prepare a string representation of a query (for logging and debugging)

Implements IDMSearchQuery.

Definition at line 100 of file entrez_search_tool.hpp.

References CEntrezSearchQuery::m_DbName, and CEntrezSearchQuery::m_Terms.

ToString() [5/8]

string CFeatureSearchQuery::ToString ( ) const

virtual

Prepare a string representation of a query (for logging and debugging)

Implements IDMSearchQuery.

Definition at line 151 of file feature_search_tool.cpp.

References CFeatureSearchQuery::m_Pattern.

ToString() [6/8]

string COrfSearchQuery::ToString ( ) const

virtual

Prepare a string representation of a query (for logging and debugging)

Implements IDMSearchQuery.

Definition at line 249 of file orf_search_tool.cpp.

References COrfSearchQuery::m_Gencode, COrfSearchQuery::m_MinPairs, and COrfSearchQuery::m_StartOrf.

ToString() [7/8]

string CSequenceSearchQuery::ToString ( ) const

virtual

Prepare a string representation of a query (for logging and debugging)

Implements IDMSearchQuery.

Definition at line 193 of file sequence_search_tool.cpp.

References CSearchToolBase::GetPatternTypeStr(), CSequenceSearchQuery::m_Pattern, CSequenceSearchQuery::m_PatternFile, and CSequenceSearchQuery::m_PatternType.

ToString() [8/8]

virtual string CVcfSearchQuery::ToString ( ) const

inlinevirtual

Prepare a string representation of a query (for logging and debugging)

Implements IDMSearchQuery.

Definition at line 95 of file vcf_search_tool.hpp.

References CVcfSearchQuery::GetIds().

TransferDataFromWindow() [1/3]

bool CCleanupPanel::TransferDataFromWindow ( )

virtual

Transfer data from the window.

Transfer data from the window

Definition at line 210 of file cleanup_panel.cpp.

References CCleanupPanel::GetData(), CObjectListWidget::GetSelection(), CCleanupPanel::m_ObjectList, and wxT.

TransferDataFromWindow() [2/3]

bool CFASTAFormatParamsPanel::TransferDataFromWindow ( )

virtual

Transfer data from the window

Definition at line 207 of file fasta_format_params_panel.cpp.

Referenced by CFASTAFormatLoadManager::CPage::CanLeavePage(), and CFASTAFormatLoadManager::DoTransition().

TransferDataFromWindow() [3/3]

bool CGffParamsPanel::TransferDataFromWindow ( )

virtual

Transfer data from the window

Definition at line 279 of file gff_params_panel.cpp.

References CAssemblySelPanel::GetData(), CGffParamsPanel::GetData(), CGffParamsPanel::m_AssemblyPanel, and CGffLoadParams::SetMapAssembly().

Referenced by CGffLoadManager::DoTransition().

TransferDataToWindow() [1/3]

bool CCleanupPanel::TransferDataToWindow ( )

virtual

Transfer data to the window.

Transfer data to the window

Definition at line 196 of file cleanup_panel.cpp.

References CCleanupPanel::m_InputObjects, CCleanupPanel::m_ObjectList, CwxTableListCtrl::SelectAll(), and CObjectListWidget::SetObjects().

Referenced by CCleanupPanel::RestoreDefaults().

TransferDataToWindow() [2/3]

bool CFASTAFormatParamsPanel::TransferDataToWindow ( )

virtual

Transfer data to the window

Definition at line 198 of file fasta_format_params_panel.cpp.

Referenced by CFASTAFormatLoadManager::x_GetParamsPanel().

TransferDataToWindow() [3/3]

bool CGffParamsPanel::TransferDataToWindow ( )

virtual

Transfer data to the window

Definition at line 263 of file gff_params_panel.cpp.

References CGffParamsPanel::GetData(), CGffParamsPanel::m_AssemblyPanel, CAssemblySelPanel::SetData(), and CGffParamsPanel::x_SetParseSeqId().

Referenced by CGffLoadManager::x_GetParamsPanel().

Update() [1/8]

void CSNPSearchForm::Update ( void  )

virtual

Implements IDMSearchForm.

Definition at line 200 of file snp_search_tool.cpp.

Update() [2/8]

void CComponentSearchForm::Update ( void  )

virtual

Implements IDMSearchForm.

Definition at line 210 of file component_search_tool.cpp.

References CComponentSearchForm::m_DbCombo, and CSearchFormBase::UpdateContextCombo().

Update() [3/8]

void CCpgSearchForm::Update ( void  )

virtual

Implements IDMSearchForm.

Definition at line 458 of file cpg_search_tool.cpp.

References CCpgSearchForm::m_DbCombo, and CSearchFormBase::UpdateContextCombo().

Update() [4/8]

void CEntrezSearchForm::Update ( void  )

virtual

Implements IDMSearchForm.

Definition at line 222 of file entrez_search_tool.cpp.

References CEntrezDB::GetDbNames(), ITERATE, CEntrezSearchForm::m_CurrDbName, CEntrezSearchForm::m_DbCombo, CEntrezSearchForm::m_DbNames, ToStdString(), and ToWxString().

Update() [5/8]

void CFeatureSearchForm::Update ( void  )

virtual

Implements IDMSearchForm.

Definition at line 194 of file feature_search_tool.cpp.

References ITERATE, NStr::Join(), CFeatureSearchForm::m_DbCombo, CSearchFormBase::m_FeatTypesSet, CFeatureSearchForm::m_HyperLink, ToWxString(), CSearchFormBase::UpdateContextCombo(), and NStr::Wrap().

Update() [6/8]

void COrfSearchForm::Update ( void  )

virtual

Implements IDMSearchForm.

Definition at line 406 of file orf_search_tool.cpp.

References COrfSearchForm::m_DbCombo, and CSearchFormBase::UpdateContextCombo().

Update() [7/8]

void CSequenceSearchForm::Update ( void  )

virtual

Implements IDMSearchForm.

Definition at line 332 of file sequence_search_tool.cpp.

References CSequenceSearchForm::m_DbCombo, CSequenceSearchForm::m_pPatternSizer, CSequenceSearchForm::m_pSearchSizer, CSearchFormBase::m_Sizer, CSequenceSearchForm::m_TypeCombo, and CSearchFormBase::UpdateContextCombo().

Update() [8/8]

void CVcfSearchForm::Update ( void  )

virtual

Implements IDMSearchForm.

Definition at line 216 of file vcf_search_tool.cpp.

References CVcfSearchForm::m_DbCombo, and CSearchFormBase::UpdateContextCombo().

UpdateContexts() [1/7]

void CSNPSearchForm::UpdateContexts ( )

virtual

updates m_ContextCombo

Reimplemented from CSearchFormBase.

Definition at line 204 of file snp_search_tool.cpp.

References CSearchFormBase::m_Controller, IDMSearchFormController::OnSearchEnabled(), and CSearchFormBase::UpdateContexts().

UpdateContexts() [2/7]

void CComponentSearchForm::UpdateContexts ( )

virtual

updates m_ContextCombo

Reimplemented from CSearchFormBase.

Definition at line 165 of file component_search_tool.cpp.

References CSearchFormBase::UpdateContexts().

UpdateContexts() [3/7]

void CCpgSearchForm::UpdateContexts ( )

virtual

updates m_ContextCombo

Reimplemented from CSearchFormBase.

Definition at line 464 of file cpg_search_tool.cpp.

References CSearchFormBase::UpdateContexts().

UpdateContexts() [4/7]

void CEntrezSearchForm::UpdateContexts ( )

virtual

updates m_ContextCombo

Reimplemented from CSearchFormBase.

Definition at line 244 of file entrez_search_tool.cpp.

References CSearchFormBase::m_Controller, IDMSearchFormController::OnSearchEnabled(), and CSearchFormBase::UpdateContexts().

UpdateContexts() [5/7]

virtual void CFeatureSearchForm::UpdateContexts ( )

inlineprotectedvirtual

updates m_ContextCombo

Reimplemented from CSearchFormBase.

Definition at line 155 of file feature_search_tool.hpp.

References CSearchFormBase::UpdateContexts().

UpdateContexts() [6/7]

void CSequenceSearchForm::UpdateContexts ( )

protectedvirtual

updates m_ContextCombo

Reimplemented from CSearchFormBase.

Definition at line 423 of file sequence_search_tool.cpp.

References CSearchFormBase::UpdateContexts().

UpdateContexts() [7/7]

void CVcfSearchForm::UpdateContexts ( )

virtual

updates m_ContextCombo

Reimplemented from CSearchFormBase.

Definition at line 171 of file vcf_search_tool.cpp.

References CSearchFormBase::UpdateContexts().

ValidateFilenames() [1/11]

bool CWigLoadManager::ValidateFilenames ( const vector< wxString > &  filenames )

virtual

checks given filenames and returns true if the manager can handle them, otherwise - shows an error message

Implements IFileFormatLoaderManager.

Definition at line 188 of file wig_load_manager.cpp.

ValidateFilenames() [2/11]

bool CGBFlatFileLoadManager::ValidateFilenames ( const vector< wxString > &  filenames )

virtual

checks given filenames and returns true if the manager can handle them, otherwise - shows an error message

Implements IFileFormatLoaderManager.

Definition at line 194 of file gb_flatfile_load_manager.cpp.

ValidateFilenames() [3/11]

bool CPhyLoader::ValidateFilenames ( const vector< wxString > &  filenames )

virtual

checks given filenames and returns true if the manager can handle them, otherwise - shows an error message

Implements IFileFormatLoaderManager.

Definition at line 166 of file phy_loader.cpp.

ValidateFilenames() [4/11]

bool CRMLoader::ValidateFilenames ( const vector< wxString > &  filenames )

virtual

checks given filenames and returns true if the manager can handle them, otherwise - shows an error message

Implements IFileFormatLoaderManager.

Definition at line 153 of file rm_load_manager.cpp.

ValidateFilenames() [5/11]

bool C5ColLoadManager::ValidateFilenames ( const vector< wxString > &  filenames )

virtual

checks given filenames and returns true if the manager can handle them, otherwise - shows an error message

Implements IFileFormatLoaderManager.

Definition at line 147 of file 5col_load_manager.cpp.

ValidateFilenames() [6/11]

bool CAgpLoader::ValidateFilenames ( const vector< wxString > &  filenames )

virtual

checks given filenames and returns true if the manager can handle them, otherwise - shows an error message

Implements IFileFormatLoaderManager.

Definition at line 187 of file agp_loader.cpp.

ValidateFilenames() [7/11]

bool CBedLoadManager::ValidateFilenames ( const vector< wxString > &  filenames )

virtual

checks given filenames and returns true if the manager can handle them, otherwise - shows an error message

Implements IFileFormatLoaderManager.

Definition at line 187 of file bed_load_manager.cpp.

ValidateFilenames() [8/11]

bool CColumnarVCFLoaderManager::ValidateFilenames ( const vector< wxString > &  filenames )

virtual

checks given filenames and returns true if the manager can handle them, otherwise - shows an error message

Implements IFileFormatLoaderManager.

Definition at line 432 of file columnar_vcf_load_manager.cpp.

ValidateFilenames() [9/11]

bool CFASTAFormatLoadManager::ValidateFilenames ( const vector< wxString > &  filenames )

virtual

checks given filenames and returns true if the manager can handle them, otherwise - shows an error message

Implements IFileFormatLoaderManager.

Definition at line 201 of file fasta_format_load_manager.cpp.

ValidateFilenames() [10/11]

bool CGffLoadManager::ValidateFilenames ( const vector< wxString > &  filenames )

virtual

checks given filenames and returns true if the manager can handle them, otherwise - shows an error message

Implements IFileFormatLoaderManager.

Definition at line 193 of file gff_load_manager.cpp.

ValidateFilenames() [11/11]

bool CVCFLoaderManager::ValidateFilenames ( const vector< wxString > &  filenames )

virtual

checks given filenames and returns true if the manager can handle them, otherwise - shows an error message

Implements IFileFormatLoaderManager.

Definition at line 188 of file vcf_load_manager.cpp.

WidgetActivated() [1/2]

void CSequinDesktopView::WidgetActivated ( )

virtual

Implements IGuiWidgetHost.

Definition at line 264 of file sequin_desktop_view.cpp.

WidgetActivated() [2/2]

void CTextView::WidgetActivated ( )

virtual

Implements IGuiWidgetHost.

Definition at line 333 of file text_view.cpp.

WidgetSelectionChanged() [1/2]

void CSequinDesktopView::WidgetSelectionChanged ( )

virtual

Implements IGuiWidgetHost.

Definition at line 258 of file sequin_desktop_view.cpp.

References CEvent::eEvent_Message, CEventHandler::ePool_Parent, CViewEvent::eWidgetSelectionChanged, and CEventHandler::Send().

WidgetSelectionChanged() [2/2]

void CTextView::WidgetSelectionChanged ( )

virtual

Implements ITextWidgetHost.

Definition at line 327 of file text_view.cpp.

References CProjectViewBase::m_SelectionService, and ISelectionService::OnSelectionChanged().

x_AddFeatToResults()

void CFeatureSearchJob::x_AddFeatToResults ( const objects::CSeq_feat &  feat, objects::CScope &  scope, const string &  loc_label, const int  cnt, const int  cnt_found, const string &  ctx_name  )

protected

Definition at line 619 of file feature_search_tool.cpp.

References cnt, CSeq_feat_Base::GetLocation(), NStr::IntToString(), kProgressStr(), location, CSearchJobBase::m_Mutex, CSearchJobBase::m_ProgressStr, CFeatureSearchJob::SeqLocToString(), and CFeatureSearchJob::x_AddToResults().

Referenced by CFeatureSearchJob::x_SearchFeatures().

x_AddToResults() [1/5]

void CComponentSearchJob::x_AddToResults ( CObject &  obj, objects::CScope &  scope, const string &  loc_name, const string &  ctx_name  )

protected

Definition at line 442 of file component_search_tool.cpp.

References CObjectList::AddRow(), CObjectList::Append(), CObjectList::ClearRows(), count, CObjectList::GetNumRows(), CDMSearchResult::GetObjectList(), CSearchJobBase::m_AccList, CSearchJobBase::m_Mutex, CSearchJobBase::m_TempResult, row, and CObjectList::SetString().

Referenced by CComponentSearchJob::x_DoSearch().

x_AddToResults() [2/5]

void CFeatureSearchJob::x_AddToResults ( CObject &  obj, objects::CScope &  scope, const string &  loc_name, const string &  strand, const string &  acc_name, const string &  ctx_name  )

protected

x_AddToResults() [3/5]

void CCpgSearchJob::x_AddToResults ( CObject &  obj, objects::CScope &  scope, const string &  loc_name, int  start, int  stop, int  length, int  gc, const string &  ctx_name  )

protected

Definition at line 655 of file cpg_search_tool.cpp.

References CObjectList::AddRow(), CObjectList::Append(), CObjectList::ClearRows(), count, NStr::fWithCommas, CObjectList::GetNumRows(), CDMSearchResult::GetObjectList(), NStr::IntToString(), CSearchJobBase::m_AccList, CSearchJobBase::m_Mutex, CSearchJobBase::m_ProgressStr, CSearchJobBase::m_TempResult, row, CObjectList::SetInteger(), and CObjectList::SetString().

Referenced by CCpgSearchJob::x_DoSearch().

x_AddToResults() [4/5]

void CSequenceSearchJob::x_AddToResults ( CObject &  obj, objects::CScope &  scope, const string &  sequence, const string &  loc_name, const string &  strand, const string &  ctx_name  )

protected

Definition at line 845 of file sequence_search_tool.cpp.

References CObjectList::AddRow(), CObjectList::Append(), CObjectList::ClearRows(), count, CSearchToolBase::eNamed, NStr::fWithCommas, CRange_Base::GetFrom(), CObjectList::GetNumRows(), CDMSearchResult::GetObjectList(), CRange_Base::GetTo(), CSeq_loc::GetTotalRange(), NStr::IntToString(), CSearchJobBase::m_AccList, CSearchJobBase::m_Mutex, CSequenceSearchJob::m_PatternType, CSearchJobBase::m_ProgressStr, CSequenceSearchJob::m_SearchStr, CSearchJobBase::m_TempResult, row, CObjectList::SetInteger(), and CObjectList::SetString().

Referenced by CSequenceSearchJob::x_SearchSequence().

x_AddToResults() [5/5]

void COrfSearchJob::x_AddToResults ( CObject &  obj, objects::CScope &  scope, int  start, int  stop, const string &  strand, int  length, int  p_length, const string &  start_cdn, const string &  stop_cdn, const string &  translated_seq, const string &  nucleotide_seq, const string &  start_context, const string &  ctx_name, const string &  kozak, int  k_loc, int  color  )

protected

Definition at line 874 of file orf_search_tool.cpp.

References CObjectList::AddRow(), CObjectList::Append(), CObjectList::ClearRows(), color, count, NStr::fWithCommas, CObjectList::GetNumRows(), CDMSearchResult::GetObjectList(), NStr::IntToString(), CSearchJobBase::m_AccList, CSearchJobBase::m_Mutex, CSearchJobBase::m_ProgressStr, CSearchJobBase::m_TempResult, row, CObjectList::SetInteger(), and CObjectList::SetString().

Referenced by COrfSearchJob::x_DoSearch().

x_CreateEditJob()

CEditAppJob * CAutodefToolManager::x_CreateEditJob ( )

protected

Definition at line 183 of file autodef_tool_manager.cpp.

References CRef< C, Locker >::GetPointer(), IServiceLocator::GetServiceByType(), CAutodefToolManager::m_Params, and CAlgoToolManagerBase::m_SrvLocator.

Referenced by CAutodefToolManager::GetTask().

x_CreateJob() [1/8]

CRef< CSearchJobBase > CSNPSearchTool::x_CreateJob ( IDMSearchQuery &  query )

protectedvirtual

implementing CSearchToolBase pure virtual function

Implements CSearchToolBase.

Definition at line 127 of file snp_search_tool.cpp.

References query, and CRef< C, Locker >::Reset().

x_CreateJob() [2/8]

CRef< CSearchJobBase > CComponentSearchTool::x_CreateJob ( IDMSearchQuery &  query )

protectedvirtual

implementing CSearchToolBase pure virtual function

Implements CSearchToolBase.

Definition at line 107 of file component_search_tool.cpp.

References query, and CRef< C, Locker >::Reset().

x_CreateJob() [3/8]

CRef< CSearchJobBase > CCpgSearchTool::x_CreateJob ( IDMSearchQuery &  query )

protectedvirtual

implementing CSearchToolBase pure virtual function

Implements CSearchToolBase.

Definition at line 228 of file cpg_search_tool.cpp.

References query, and CRef< C, Locker >::Reset().

x_CreateJob() [4/8]

CRef< CSearchJobBase > CEntrezSearchTool::x_CreateJob ( IDMSearchQuery &  query )

protectedvirtual

implementing CSearchToolBase pure virtual function

Implements CSearchToolBase.

Definition at line 122 of file entrez_search_tool.cpp.

References query, and CRef< C, Locker >::Reset().

x_CreateJob() [5/8]

CRef< CSearchJobBase > CFeatureSearchTool::x_CreateJob ( IDMSearchQuery &  query )

protectedvirtual

implementing CSearchToolBase pure virtual function

Implements CSearchToolBase.

Definition at line 112 of file feature_search_tool.cpp.

References query, and CRef< C, Locker >::Reset().

x_CreateJob() [6/8]

CRef< CSearchJobBase > COrfSearchTool::x_CreateJob ( IDMSearchQuery &  query )

protectedvirtual

implementing CSearchToolBase pure virtual function

Implements CSearchToolBase.

Definition at line 206 of file orf_search_tool.cpp.

References COrfSearchForm::m_Kozak, query, and CRef< C, Locker >::Reset().

x_CreateJob() [7/8]

CRef< CSearchJobBase > CSequenceSearchTool::x_CreateJob ( IDMSearchQuery &  query )

protectedvirtual

implementing CSearchToolBase pure virtual function

Implements CSearchToolBase.

Definition at line 152 of file sequence_search_tool.cpp.

References query, and CRef< C, Locker >::Reset().

x_CreateJob() [8/8]

CRef< CSearchJobBase > CVcfSearchTool::x_CreateJob ( IDMSearchQuery &  query )

protectedvirtual

implementing CSearchToolBase pure virtual function

Implements CSearchToolBase.

Definition at line 114 of file vcf_search_tool.cpp.

References query, and CRef< C, Locker >::Reset().

x_CreateLoadingJob() [1/4]

CDataLoadingAppJob * CCleanupTool::x_CreateLoadingJob ( )

protectedvirtual

factory method for creating the job that executes the tool algorithm override in derived classes

Implements CAlgoToolManagerBase.

Definition at line 183 of file cleanup_tool.cpp.

References CCleanupParams::GetCleanupMode(), CCleanupPanel::GetData(), Info(), LOG_POST, CCleanupTool::m_Panel, and CCleanupTool::m_Params.

Referenced by CCleanupTool::GetTask().

x_CreateLoadingJob() [2/4]

CDataLoadingAppJob * CMergeTool::x_CreateLoadingJob ( )

protectedvirtual

factory method for creating the job that executes the tool algorithm override in derived classes

Implements CAlgoToolManagerBase.

Definition at line 186 of file merge_tool.cpp.

References CMergePanel::GetData(), CMergeTool::m_Panel, and CMergeTool::m_Params.

Referenced by CMergeTool::GetTask().

x_CreateLoadingJob() [3/4]

CDataLoadingAppJob * CAutodefToolManager::x_CreateLoadingJob ( )

protectedvirtual

factory method for creating the job that executes the tool algorithm override in derived classes

Implements CAlgoToolManagerBase.

Definition at line 177 of file autodef_tool_manager.cpp.

References NULL.

x_CreateLoadingJob() [4/4]

CDataLoadingAppJob * CSrcEditTool::x_CreateLoadingJob ( )

protectedvirtual

factory method for creating the job that executes the tool algorithm override in derived classes

Implements CAlgoToolManagerBase.

Definition at line 193 of file srcedit_tool.cpp.

References CSrcEditPanel::GetData(), CSrcEditTool::m_Panel, and CSrcEditTool::m_Params.

Referenced by CSrcEditTool::GetTask().

x_CreateMenuBarMenu()

void CFeatTableView::x_CreateMenuBarMenu ( )

protectedvirtual

initializes m_MenuBarMenu; override in derived classes

Reimplemented from CProjectViewBase.

Definition at line 181 of file view_feattable.cpp.

References CFeatTableView::x_InitMenuResources().

x_CreateParamsPanelIfNeeded() [1/4]

bool CCleanupTool::x_CreateParamsPanelIfNeeded ( )

protectedvirtual

returns / creates Parameters panel, override in derived classes see cpp file for example

Implements CAlgoToolManagerBase.

Definition at line 121 of file cleanup_tool.cpp.

References CCleanupPanel::Create(), CCleanupPanel::LoadSettings(), CCleanupTool::m_Objects, CCleanupTool::m_Panel, CCleanupTool::m_Params, CAlgoToolManagerBase::m_ParentWindow, CAlgoToolManagerBase::m_RegPath, NULL, CCleanupPanel::SetData(), CCleanupPanel::SetObjects(), CAlgoToolManagerParamsPanel::SetRegistryPath(), and CCleanupTool::x_SelectCompatibleInputObjects().

x_CreateParamsPanelIfNeeded() [2/4]

bool CMergeTool::x_CreateParamsPanelIfNeeded ( )

protectedvirtual

returns / creates Parameters panel, override in derived classes see cpp file for example

Implements CAlgoToolManagerBase.

Definition at line 123 of file merge_tool.cpp.

References CMergePanel::Create(), CMergePanel::LoadSettings(), CMergeTool::m_Objects, CMergeTool::m_Panel, CMergeTool::m_Params, CAlgoToolManagerBase::m_ParentWindow, CAlgoToolManagerBase::m_RegPath, NULL, CMergePanel::SetData(), CMergePanel::SetObjects(), CMergePanel::SetRegistryPath(), and CMergeTool::x_SelectCompatibleInputObjects().

x_CreateParamsPanelIfNeeded() [3/4]

bool CAutodefToolManager::x_CreateParamsPanelIfNeeded ( )

protectedvirtual

returns / creates Parameters panel, override in derived classes see cpp file for example

Implements CAlgoToolManagerBase.

Definition at line 100 of file autodef_tool_manager.cpp.

References CAutodefParamsPanel::Create(), CAutodefParamsPanel::LoadSettings(), CAutodefToolManager::m_Params, CAutodefToolManager::m_ParamsPanel, CAlgoToolManagerBase::m_ParentWindow, CAlgoToolManagerBase::m_RegPath, CAutodefToolManager::m_SeqEntries, NULL, CAutodefParamsPanel::SetParams(), CAutodefParamsPanel::SetRegistryPath(), and CAutodefToolManager::x_SelectCompatibleInputObjects().

x_CreateParamsPanelIfNeeded() [4/4]

bool CSrcEditTool::x_CreateParamsPanelIfNeeded ( )

protectedvirtual

returns / creates Parameters panel, override in derived classes see cpp file for example

Implements CAlgoToolManagerBase.

Definition at line 131 of file srcedit_tool.cpp.

References CSrcEditPanel::Create(), CSrcEditPanel::LoadSettings(), CSrcEditTool::m_Objects, CSrcEditTool::m_Panel, CSrcEditTool::m_Params, CAlgoToolManagerBase::m_ParentWindow, CAlgoToolManagerBase::m_RegPath, NULL, CSrcEditPanel::SetData(), CSrcEditPanel::SetObjects(), CAlgoToolManagerParamsPanel::SetRegistryPath(), and CSrcEditTool::x_SelectCompatibleInputObjects().

x_CreateProjectPanelIfNeeded()

void CAutodefToolManager::x_CreateProjectPanelIfNeeded ( )

protectedvirtual

returns / creates Project panel

Reimplemented from CAlgoToolManagerBase.

Definition at line 191 of file autodef_tool_manager.cpp.

x_CreateWidgets() [1/3]

void CComponentSearchForm::x_CreateWidgets ( )

protectedvirtual

Definition at line 171 of file component_search_tool.cpp.

Referenced by CComponentSearchForm::Create().

x_CreateWidgets() [2/3]

void CFeatureSearchForm::x_CreateWidgets ( )

protectedvirtual

Definition at line 326 of file feature_search_tool.cpp.

Referenced by CFeatureSearchForm::Create().

x_CreateWidgets() [3/3]

void CVcfSearchForm::x_CreateWidgets ( )

protectedvirtual

Definition at line 177 of file vcf_search_tool.cpp.

Referenced by CVcfSearchForm::Create().

x_DecodeGeneticCode()

int COrfSearchJob::x_DecodeGeneticCode ( const string &  s )

protected

Definition at line 859 of file orf_search_tool.cpp.

References eUnknown, CGenetic_code_table_Base::Get(), CGen_code_table::GetCodeTable(), ITERATE, and NCBI_THROW.

Referenced by COrfSearchJob::x_DoSearch().

x_DoSearch() [1/8]

IAppJob::EJobState CSNPSearchJob::x_DoSearch ( )

protectedvirtual

performs searching, assuming that params are correct; Implement in derived classes

Implements CSearchJobBase.

Definition at line 240 of file snp_search_tool.cpp.

References CScope::AddDefaults(), CObjectList::AddRow(), NSNPWebServices::c_SNPVarExt_Comment, NSNPWebServices::c_SNPVarExt_GeneSymbol, NSNPWebServices::c_SNPVarExt_QueryId, CVariantPlacement_Base::CanGetAssembly(), CUser_field_Base::CanGetData(), IAppJob::eCanceled, IAppJob::eCompleted, eExtreme_Positional, CVariantPlacement_Base::GetAssembly(), CUser_field_Base::GetData(), CObjectManager::GetInstance(), CVariantPlacement_Base::GetLoc(), CDMSearchResult::GetObjectList(), CRef< C, Locker >::GetPointer(), CSeq_loc::GetStart(), CSeq_loc::GetStop(), CObject_id_Base::GetStr(), CUser_field_Base::C_Data::GetStr(), CDbtag_Base::GetTag(), CSNPSearchQuery::GetTerms(), CJobCancelable::IsCanceled(), CUser_field_Base::C_Data::IsStr(), ITERATE, CSearchJobBase::m_Mutex, CSNPSearchJob::m_Query, CSearchJobBase::m_TempResult, NCBI_ASSERT, NON_CONST_ITERATE, om, NSNPWebServices::Search(), CObjectList::SetInteger(), and CObjectList::SetString().

x_DoSearch() [2/8]

IAppJob::EJobState CComponentSearchJob::x_DoSearch ( )

protectedvirtual

performs searching, assuming that params are correct; Implement in derived classes

Implements CSearchJobBase.

Definition at line 307 of file component_search_tool.cpp.

References count, IAppJob::eCanceled, IAppJob::eCompleted, CLabel::eDefault, eGetId_ForceGi, CStopWatch::Elapsed(), eNa_strand_plus, Error(), CSeqMap::eSeqRef, CSeqMap::fFindRef, NStr::fSplit_Tokenize, NStr::fWithCommas, CScope::GetBioseqHandle(), CBioseq_Handle::GetBioseqLength(), CSeqMap_CI::GetEndPosition(), CSeq_id_Handle::GetHandle(), GetId(), GetIdHandle(), CComponentSearchQuery::GetIds(), CLabel::GetLabel(), CException::GetMsg(), CSeqMap_CI::GetPosition(), CSeqMap_CI::GetRefSeqid(), CSearchQueryBase::GetScopedLocs(), CSeq_id_Handle::GetSeqId(), CBioseq_Handle::GetSeqMap(), CSeq_id::GetTextseq_Id(), CSeq_loc::GetTotalRange(), CSeqMap_CI::GetType(), Info(), NStr::IntToString(), CJobCancelable::IsCanceled(), CTextseq_id_Base::IsSetVersion(), CSeq_loc_Base::IsWhole(), ITERATE, LOG_POST, CSearchQueryBase::SScopedLoc::m_ContextName, CSearchQueryBase::SScopedLoc::m_Loc, CSearchJobBase::m_Mutex, CSearchJobBase::m_ProgressStr, CComponentSearchJob::m_Query, CSearchQueryBase::SScopedLoc::m_Scope, CSeqUtils::Match(), NON_CONST_ITERATE, compile_time_bits::range(), CSeqMap::ResolvedRangeIterator(), CSeq_loc::SetId(), CSeq_loc::SetInt(), NStr::Split(), CStopWatch::Start(), sw, and CComponentSearchJob::x_AddToResults().

x_DoSearch() [3/8]

IAppJob::EJobState CCpgSearchJob::x_DoSearch ( )

protectedvirtual

performs searching, assuming that params are correct; Implement in derived classes

Implements CSearchJobBase.

Definition at line 543 of file cpg_search_tool.cpp.

References CSeq_annot::AddComment(), data, CBioseq_Handle::eCoding_Iupac, IAppJob::eCompleted, CTime::eCurrent, CLabel::eDefault, IAppJob::eFailed, CCpgSearchQuery::GetAdjMergeThreshold(), CScope::GetBioseqHandle(), CRange_Base::GetFrom(), GetId(), CCpGIslands::GetIsles(), CLabel::GetLabel(), COpenRange< Position >::GetLength(), CSeq_feat_Base::GetLocation(), CCpgSearchQuery::GetMinGC(), CCpgSearchQuery::GetMinLenOfIsland(), CCpgSearchQuery::GetMinPercentage(), CSearchQueryBase::GetScopedLocs(), CSeqVector::GetSeqData(), CCpgSearchQuery::GetSizeOfSlidingWindow(), CRange_Base::GetTo(), CSeq_loc::GetTotalRange(), i, ITERATE, label, CSearchQueryBase::SScopedLoc::m_ContextName, CSearchQueryBase::SScopedLoc::m_Loc, CCpgSearchJob::m_Query, CSearchQueryBase::SScopedLoc::m_Scope, CCpGIslands::MergeIslesWithin(), CSeqUtils::RemapChildToParent(), row, CSeq_annot::SetCreateDate(), CSeq_annot_Base::SetData(), CSeq_feat_Base::SetData(), CSeq_interval_Base::SetFrom(), CSeq_interval_Base::SetId(), CSeq_feat_Base::SetLocation(), CSeq_annot::SetNameDesc(), CSeq_interval_Base::SetTo(), ncbi::grid::netcache::search::fields::size, CSeqVector::size(), NStr::SizetToString(), NStr::StringToInt(), and CCpgSearchJob::x_AddToResults().

x_DoSearch() [4/8]

IAppJob::EJobState CEntrezSearchJob::x_DoSearch ( )

protectedvirtual

performs searching, assuming that params are correct; Implement in derived classes

Implements CSearchJobBase.

Definition at line 287 of file entrez_search_tool.cpp.

References CScope::AddDefaults(), CObjectList::AddRow(), IAppJob::eCanceled, IAppJob::eCompleted, xml::document::get_root_node(), CEntrezSearchQuery::GetDbName(), CObjectManager::GetInstance(), CDMSearchResult::GetObjectList(), CRef< C, Locker >::GetPointer(), CEntrezSearchQuery::GetTerms(), int, CJobCancelable::IsCanceled(), kMaxResults, CSearchJobBase::m_MaxResultsCount, CSearchJobBase::m_Mutex, CEntrezSearchJob::m_Query, CSearchJobBase::m_ResultsCount, CSearchJobBase::m_TempResult, NON_CONST_ITERATE, om, CEntrezDB::Query(), xml::node::run_xpath_query(), and CEntrezSearchJob::SetReleaseType().

x_DoSearch() [5/8]

virtual EJobState CFeatureSearchJob::x_DoSearch ( )

protectedvirtual

performs searching, assuming that params are correct; Implement in derived classes

Implements CSearchJobBase.

x_DoSearch() [6/8]

IAppJob::EJobState COrfSearchJob::x_DoSearch ( )

protectedvirtual

performs searching, assuming that params are correct; Implement in derived classes

Implements CSearchJobBase.

Definition at line 592 of file orf_search_tool.cpp.

References color, delta(), CSeqFeatData_Base::e_Cdregion, CSeq_data_Base::e_Iupacna, IAppJob::eCanceled, CBioseq_Handle::eCoding_Iupac, CBioseq_Handle::eCoding_Ncbi, IAppJob::eCompleted, CLabel::eDefault, CSeq_feat_Base::eExp_ev_not_experimental, eExtreme_Positional, IAppJob::eFailed, CCdregion_Base::eFrame_one, eGetId_Canonical, eNa_strand_minus, multimap_checker< Container >::end(), CRegexp::fCompile_ignore_case, IDMSearchTool::TFilters::filters, multimap_checker< Container >::find(), COrf::FindOrfs(), CScope::GetBioseqHandle(), CBioseq_Handle::GetBioseqLength(), ITaxon1Node::GetGC(), COrfSearchQuery::GetGencode(), GetId(), CLabel::GetLabel(), CMappedFeat::GetLocation(), CRegexp::GetMatch(), COrfSearchQuery::GetMinPairs(), CSearchQueryBase::GetScopedLocs(), CSeqVector::GetSeqData(), COrfSearchQuery::GetStartOrf(), CScope::GetTaxIds(), CSeq_loc::GetTotalRange(), CTaxon1::Init(), multimap_checker< Container >::insert(), int, CJobCancelable::IsCanceled(), ITERATE, CTaxon1::LoadNode(), CSearchQueryBase::SScopedLoc::m_ContextName, CSearchJobBase::m_Filters, COrfSearchJob::m_KozakList, CSearchQueryBase::SScopedLoc::m_Loc, COrfSearchJob::m_Query, CSearchQueryBase::SScopedLoc::m_Scope, match(), max(), min(), NCBI_CATCH, NON_CONST_ITERATE, NULL, compile_time_bits::range(), CSeqUtils::RemapChildToParent(), sAutoSelect, IDMSearchTool::TFilters::selected, CSeqVector::SetCoding(), CSeq_feat_Base::SetData(), CSeq_feat_Base::SetExp_ev(), CSeq_loc::SetId(), CSeq_loc::SetInt(), CSeq_feat_Base::SetLocation(), CSeq_feat_Base::SetTitle(), CSeqVector::size(), ct::sort(), NStr::StringToInt(), tmp, NStr::ToLower(), NStr::ToUpper(), CSeqTranslator::Translate(), rapidjson::value, COrfSearchJob::x_AddToResults(), and COrfSearchJob::x_DecodeGeneticCode().

x_DoSearch() [7/8]

IAppJob::EJobState CSequenceSearchJob::x_DoSearch ( )

protectedvirtual

performs searching, assuming that params are correct; Implement in derived classes

Implements CSearchJobBase.

Definition at line 553 of file sequence_search_tool.cpp.

References IAppJob::eFailed, CSearchToolBase::eNamed, CSearchToolBase::eRegexp, CSearchToolBase::eWildcard, CRegexp::fCompile_ignore_case, CSequenceSearchQuery::GetPattern(), CSequenceSearchQuery::GetPatternFile(), CSequenceSearchQuery::GetPatternType(), CSearchQueryBase::GetScopedLocs(), ITERATE, CSequenceSearchForm::m_FileList, CSequenceSearchJob::m_Pattern, CSequenceSearchJob::m_PatternFile, CSequenceSearchJob::m_PatternType, CSequenceSearchJob::m_Query, CSequenceSearchJob::m_SearchStr, NULL, CRegexp::WildcardToRegexp(), and CSequenceSearchJob::x_SearchSequence().

x_DoSearch() [8/8]

IAppJob::EJobState CVcfSearchJob::x_DoSearch ( )

protectedvirtual

performs searching, assuming that params are correct; Implement in derived classes

Implements CSearchJobBase.

Definition at line 268 of file vcf_search_tool.cpp.

References CObjectList::AddRow(), INonAsnTrackData::DoSearch(), IAppJob::eCanceled, IAppJob::eCompleted, CVcfSearchQuery::GetIds(), CDMSearchResult::GetObjectList(), CRef< C, Locker >::GetPointer(), CVcfSearchQuery::GetVcfContexts(), CJobCancelable::IsCanceled(), CSearchJobBase::m_Mutex, CSearchJobBase::m_ProgressStr, CVcfSearchJob::m_Query, CSearchJobBase::m_TempResult, result, results, CStopWatch::Start(), and sw.

x_FillMRUList()

void CGenBankLoadOptionPanel::x_FillMRUList ( )

private

Definition at line 162 of file gb_load_option_panel.cpp.

References CTime::eCurrent, CTimeMRUList< T >::GetMap(), CGenBankLoadOptionPanel::m_AccMRUList, CGenBankLoadOptionPanel::m_MRUWindow, sFormatTimePeriod(), t, ToWxString(), and wxT.

Referenced by CGenBankLoadOptionPanel::LoadSettings().

x_GetMatches()

void CSequenceSearchJob::x_GetMatches ( const string &  data, int  start, TRangeCollection &  coll, bool  reverse  )

protected

"offset" argument defines the sequence position corresponding to the fisrt character in "data"

Definition at line 761 of file sequence_search_tool.cpp.

References _ASSERT, data, CSearchToolBase::eExactMatch, NStr::eForwardSearch, CSearchToolBase::eNamed, NStr::eNocase, CSearchToolBase::eRegexp, CSearchToolBase::eWildcard, NStr::Find(), CRegexp::fMatch_default, CRegexp::GetMatch(), CRegexp::GetResults(), i, set< Key, Compare >::insert(), int, CJobCancelable::IsCanceled(), kMaxResults, len, CSequenceSearchJob::m_Pattern, CSequenceSearchJob::m_PatternType, CSearchJobBase::m_ResultsCount, CSequenceSearchJob::m_SearchStr, NPOS, CRegexp::NumFound(), offset, and set< Key, Compare >::size().

Referenced by CSequenceSearchJob::x_SearchSequence().

x_GetNewOLTModel() [1/5]

CObjectListTableModel * CSNPSearchJob::x_GetNewOLTModel ( ) const

protectedvirtual

factory method creating new column handler for CObjectListWidget

factory method creating new model for CObjectListWidget

Reimplemented from CSearchJobBase.

Definition at line 330 of file snp_search_tool.cpp.

x_GetNewOLTModel() [2/5]

CObjectListTableModel * CCpgSearchJob::x_GetNewOLTModel ( ) const

protectedvirtual

factory method creating new column handler for CObjectListWidget

factory method creating new model for CObjectListWidget

Reimplemented from CSearchJobBase.

Definition at line 692 of file cpg_search_tool.cpp.

x_GetNewOLTModel() [3/5]

CObjectListTableModel * CEntrezSearchJob::x_GetNewOLTModel ( ) const

protectedvirtual

factory method creating new column handler for CObjectListWidget

factory method creating new model for CObjectListWidget

Reimplemented from CSearchJobBase.

Definition at line 325 of file entrez_search_tool.cpp.

References CEntrezSearchQuery::GetDbName(), and CEntrezSearchJob::m_Query.

x_GetNewOLTModel() [4/5]

CObjectListTableModel * COrfSearchJob::x_GetNewOLTModel ( ) const

protectedvirtual

factory method creating new column handler for CObjectListWidget

factory method creating new model for CObjectListWidget

Reimplemented from CSearchJobBase.

Definition at line 931 of file orf_search_tool.cpp.

References COrfSearchJob::m_ColorCol, and COrfSearchTableModel::SetColorColumn().

x_GetNewOLTModel() [5/5]

CObjectListTableModel * CSequenceSearchJob::x_GetNewOLTModel ( ) const

protectedvirtual

factory method creating new column handler for CObjectListWidget

factory method creating new model for CObjectListWidget

Reimplemented from CSearchJobBase.

Definition at line 891 of file sequence_search_tool.cpp.

x_GetOrigObject()

const CObject * CFeatTableView::x_GetOrigObject ( ) const

protectedvirtual

Reimplemented from CProjectViewBase.

Definition at line 364 of file view_feattable.cpp.

References CConstRef< C, Locker >::GetPointer(), and CFeatTableView::m_OrigObject.

x_GetParamsAsRegSetting() [1/4]

IRegSettings * CCleanupTool::x_GetParamsAsRegSetting ( )

protectedvirtual

return a pointer to Parameters object as IRegSettings interface

Implements CAlgoToolManagerBase.

Definition at line 164 of file cleanup_tool.cpp.

References CCleanupTool::m_Params.

x_GetParamsAsRegSetting() [2/4]

IRegSettings * CMergeTool::x_GetParamsAsRegSetting ( )

protectedvirtual

return a pointer to Parameters object as IRegSettings interface

Implements CAlgoToolManagerBase.

Definition at line 161 of file merge_tool.cpp.

References NULL.

x_GetParamsAsRegSetting() [3/4]

IRegSettings * CAutodefToolManager::x_GetParamsAsRegSetting ( )

protectedvirtual

return a pointer to Parameters object as IRegSettings interface

Implements CAlgoToolManagerBase.

Definition at line 171 of file autodef_tool_manager.cpp.

References CAutodefToolManager::m_Params.

x_GetParamsAsRegSetting() [4/4]

IRegSettings * CSrcEditTool::x_GetParamsAsRegSetting ( )

protectedvirtual

return a pointer to Parameters object as IRegSettings interface

Implements CAlgoToolManagerBase.

Definition at line 174 of file srcedit_tool.cpp.

References CSrcEditTool::m_Params.

x_GetParamsPanel() [1/11]

CAlgoToolManagerParamsPanel * CCleanupTool::x_GetParamsPanel ( )

protectedvirtual

returns a pointer to the parameters panel, override in derived classes

Implements CAlgoToolManagerBase.

Definition at line 159 of file cleanup_tool.cpp.

References CCleanupTool::m_Panel.

Referenced by CCleanupTool::DoTransition().

x_GetParamsPanel() [2/11]

CGBFlatFileParamsPanel * CGBFlatFileLoadManager::x_GetParamsPanel ( )

protected

Definition at line 122 of file gb_flatfile_load_manager.cpp.

References CGBFlatFileLoadManager::m_Params, CGBFlatFileLoadManager::m_ParamsPanel, CGBFlatFileLoadManager::m_ParentWindow, NULL, and CGBFlatFileParamsPanel::SetData().

Referenced by CGBFlatFileLoadManager::GetCurrentPanel(), and CGBFlatFileLoadManager::CPage::GetPanel().

x_GetParamsPanel() [3/11]

CAlgoToolManagerParamsPanel * CMergeTool::x_GetParamsPanel ( )

protectedvirtual

returns a pointer to the parameters panel, override in derived classes

Implements CAlgoToolManagerBase.

Definition at line 156 of file merge_tool.cpp.

References CMergeTool::m_Panel.

Referenced by CMergeTool::DoTransition().

x_GetParamsPanel() [4/11]

CAlgoToolManagerParamsPanel * CAutodefToolManager::x_GetParamsPanel ( )

protectedvirtual

returns a pointer to the parameters panel, override in derived classes

Implements CAlgoToolManagerBase.

Definition at line 165 of file autodef_tool_manager.cpp.

References CAutodefToolManager::m_ParamsPanel.

x_GetParamsPanel() [5/11]

CAlgoToolManagerParamsPanel * CSrcEditTool::x_GetParamsPanel ( )

protectedvirtual

returns a pointer to the parameters panel, override in derived classes

Implements CAlgoToolManagerBase.

Definition at line 169 of file srcedit_tool.cpp.

References CSrcEditTool::m_Panel.

Referenced by CSrcEditTool::DoTransition().

x_GetParamsPanel() [6/11]

CAgpLoadPage * CAgpLoader::x_GetParamsPanel ( )

protected

Definition at line 115 of file agp_loader.cpp.

References CAgpLoader::m_Params, CAgpLoader::m_ParamsPanel, CAgpLoader::m_ParentWindow, NULL, CAgpLoadPage::SetData(), and CAgpLoadPage::TransferDataToWindow().

Referenced by CAgpLoader::GetCurrentPanel(), and CAgpLoader::CPage::GetPanel().

x_GetParamsPanel() [7/11]

CBedParamsPanel * CBedLoadManager::x_GetParamsPanel ( )

protected

Definition at line 116 of file bed_load_manager.cpp.

References CBedLoadManager::m_Params, CBedLoadManager::m_ParamsPanel, CBedLoadManager::m_ParentWindow, NULL, CBedParamsPanel::SetData(), and CBedParamsPanel::TransferDataToWindow().

Referenced by CBedLoadManager::GetCurrentPanel(), and CBedLoadManager::CPage::GetPanel().

x_GetParamsPanel() [8/11]

CFASTAFormatParamsPanel * CFASTAFormatLoadManager::x_GetParamsPanel ( )

protected

Definition at line 129 of file fasta_format_load_manager.cpp.

References CFASTAFormatLoadManager::m_Params, CFASTAFormatLoadManager::m_ParamsPanel, CFASTAFormatLoadManager::m_ParentWindow, NULL, CFASTAFormatParamsPanel::SetData(), and CFASTAFormatParamsPanel::TransferDataToWindow().

Referenced by CFASTAFormatLoadManager::GetCurrentPanel(), and CFASTAFormatLoadManager::CPage::GetPanel().

x_GetParamsPanel() [9/11]

CGffParamsPanel * CGffLoadManager::x_GetParamsPanel ( )

protected

Definition at line 119 of file gff_load_manager.cpp.

References CGffLoadManager::m_Params, CGffLoadManager::m_ParamsPanel, CGffLoadManager::m_ParentWindow, NULL, CGffParamsPanel::SetData(), and CGffParamsPanel::TransferDataToWindow().

Referenced by CGffLoadManager::GetCurrentPanel(), and CGffLoadManager::CPage::GetPanel().

x_GetParamsPanel() [10/11]

CBedParamsPanel * CVCFLoaderManager::x_GetParamsPanel ( )

protected

Definition at line 116 of file vcf_load_manager.cpp.

References CVCFLoaderManager::m_Params, CVCFLoaderManager::m_ParamsPanel, CVCFLoaderManager::m_ParentWindow, NULL, CBedParamsPanel::SetData(), and CBedParamsPanel::TransferDataToWindow().

Referenced by CVCFLoaderManager::GetCurrentPanel(), and CVCFLoaderManager::CPage::GetPanel().

x_GetParamsPanel() [11/11]

CWigParamsPanel * CWigLoadManager::x_GetParamsPanel ( )

protected

Definition at line 116 of file wig_load_manager.cpp.

References CWigLoadManager::m_Params, CWigLoadManager::m_ParamsPanel, CWigLoadManager::m_ParentWindow, NULL, CWigParamsPanel::SetData(), and CWigParamsPanel::TransferDataToWindow().

Referenced by CWigLoadManager::GetCurrentPanel(), and CWigLoadManager::CPage::GetPanel().

x_GetRefSeqs()

void CColumnarVCFLoaderManager::x_GetRefSeqs ( )

protected

Definition at line 341 of file columnar_vcf_load_manager.cpp.

References CSeq_id::AsFastaString(), map_checker< Container >::clear(), CGC_TypedSeqId_Base::e_Genbank, CGC_SeqIdAlias::e_Public, CGC_TypedSeqId_Base::e_Refseq, CGC_Assembly::eChromosome, Error(), CGC_Assembly::eTopLevel, CGencollSvc::GetInstance(), GUI_AsyncExec(), Info(), LOG_POST, CColumnarVCFLoaderManager::m_AssmAcc, CColumnarVCFLoaderManager::m_GenCollAssm, CColumnarVCFLoaderManager::m_MappedSeqIds, CColumnarVCFLoaderManager::m_RefSeqIds, CColumnarVCFLoaderManager::m_TopLevelSeqCount, and wxT.

Referenced by CColumnarVCFLoaderManager::DoTransition().

x_GetSequence()

void CSequenceSearchJob::x_GetSequence ( objects::CSeqVector &  vec, const CRange< TSeqPos > &  range, string *  s  )

protected

Definition at line 827 of file sequence_search_tool.cpp.

References CSeqVector::GetSeqData(), and compile_time_bits::range().

Referenced by CSequenceSearchJob::x_SearchSequence().

x_GetTool() [1/8]

IDMSearchTool * CComponentSearchForm::x_GetTool ( void  )

protectedvirtual

Implements CSearchFormBase.

Definition at line 177 of file component_search_tool.cpp.

References CRef< C, Locker >::GetPointer(), and CComponentSearchForm::m_Tool.

x_GetTool() [2/8]

IDMSearchTool * CCpgSearchForm::x_GetTool ( void  )

protectedvirtual

Implements CSearchFormBase.

Definition at line 348 of file cpg_search_tool.cpp.

References CRef< C, Locker >::GetPointer(), and CCpgSearchForm::m_Tool.

x_GetTool() [3/8]

IDMSearchTool * CFeatureSearchForm::x_GetTool ( void  )

protectedvirtual

Implements CSearchFormBase.

Definition at line 331 of file feature_search_tool.cpp.

References CRef< C, Locker >::GetPointer(), and CFeatureSearchForm::m_Tool.

x_GetTool() [4/8]

IDMSearchTool * COrfSearchForm::x_GetTool ( void  )

protectedvirtual

Implements CSearchFormBase.

Definition at line 319 of file orf_search_tool.cpp.

References CRef< C, Locker >::GetPointer(), and COrfSearchForm::m_Tool.

x_GetTool() [5/8]

IDMSearchTool * CSequenceSearchForm::x_GetTool ( void  )

protectedvirtual

Implements CSearchFormBase.

Definition at line 246 of file sequence_search_tool.cpp.

References CRef< C, Locker >::GetPointer(), and CSequenceSearchForm::m_Tool.

x_GetTool() [6/8]

IDMSearchTool * CVcfSearchForm::x_GetTool ( void  )

protectedvirtual

Implements CSearchFormBase.

Definition at line 183 of file vcf_search_tool.cpp.

References CRef< C, Locker >::GetPointer(), and CVcfSearchForm::m_Tool.

x_GetTool() [7/8]

IDMSearchTool* CSNPSearchForm::x_GetTool ( void  )

inlineprotectedvirtual

Implements CSearchFormBase.

Definition at line 126 of file snp_search_tool.hpp.

References CRef< C, Locker >::GetPointer(), and CSNPSearchForm::m_Tool.

x_GetTool() [8/8]

IDMSearchTool* CEntrezSearchForm::x_GetTool ( void  )

inlineprotectedvirtual

Implements CSearchFormBase.

Definition at line 135 of file entrez_search_tool.hpp.

References CRef< C, Locker >::GetPointer(), and CEntrezSearchForm::m_Tool.

x_GetViewSettingsFromParams()

string CViewGraphic::x_GetViewSettingsFromParams ( const objects::CUser_object *  params )

protected

Definition at line 883 of file view_graphic.cpp.

References _ASSERT, data, CObject_id_Base::GetStr(), CObject_id_Base::IsStr(), ITERATE, label, and string.

Referenced by CViewGraphic::InitView().

x_InitMenuResources()

void CFeatTableView::x_InitMenuResources ( )

protected

Definition at line 163 of file view_feattable.cpp.

Referenced by CFeatTableView::x_CreateMenuBarMenu().

x_IsSNP()

bool CFeatureSearchJob::x_IsSNP ( ) const

protected

Definition at line 702 of file feature_search_tool.cpp.

References CRegexp::IsMatch(), and CFeatureSearchJob::m_SearchStr.

Referenced by CFeatureSearchJob::x_SearchFeatures().

x_LoadSettings() [1/9]

virtual void CComponentSearchForm::x_LoadSettings ( const CRegistryReadView &  )

inlineprotectedvirtual

Implements CSearchFormBase.

Definition at line 135 of file component_search_tool.hpp.

x_LoadSettings() [2/9]

virtual void CVcfSearchForm::x_LoadSettings ( const CRegistryReadView &  )

inlineprotectedvirtual

Implements CSearchFormBase.

Definition at line 135 of file vcf_search_tool.hpp.

x_LoadSettings() [3/9]

void CSNPSearchForm::x_LoadSettings ( const CRegistryReadView &  view )

protectedvirtual

Implements CSearchFormBase.

Definition at line 176 of file snp_search_tool.cpp.

x_LoadSettings() [4/9]

void CCpgSearchForm::x_LoadSettings ( const CRegistryReadView &  view )

protectedvirtual

Implements CSearchFormBase.

Definition at line 318 of file cpg_search_tool.cpp.

References CRegistryReadView::GetString(), kCpgAdjMergeTHreshold, kCpgMinGC, kCpgMinLenOfIsland, kCpgMinPercentage, kCpgSizeOfSlidingWindow, CCpgSearchForm::m_AdjMergeThreshold, CCpgSearchForm::m_MinGC, CCpgSearchForm::m_MinLenOfIsland, CCpgSearchForm::m_MinPercentage, and CCpgSearchForm::m_SizeOfSlidingWindow.

x_LoadSettings() [5/9]

void CEntrezSearchForm::x_LoadSettings ( const CRegistryReadView &  view )

protectedvirtual

Implements CSearchFormBase.

Definition at line 182 of file entrez_search_tool.cpp.

References CRegistryReadView::GetString(), kDatabaseTag, and CEntrezSearchForm::m_CurrDbName.

x_LoadSettings() [6/9]

void CFeatureSearchForm::x_LoadSettings ( const CRegistryReadView &  view )

protectedvirtual

Implements CSearchFormBase.

Definition at line 221 of file feature_search_tool.cpp.

References set< Key, Compare >::clear(), CFeatListItem::GetDescription(), CSeqFeatData::GetFeatList(), CRegistryReadView::GetString(), CRegistryReadView::GetStringList(), set< Key, Compare >::insert(), ITERATE, kFetPattern, kFetTypes, CSearchFormBase::m_FeatTypesSet, CFeatureSearchForm::m_FeatureTypes, and CFeatureSearchForm::m_SearchPattern.

x_LoadSettings() [7/9]

void COrfSearchForm::x_LoadSettings ( const CRegistryReadView &  view )

protectedvirtual

Implements CSearchFormBase.

Definition at line 293 of file orf_search_tool.cpp.

References CRegistryReadView::GetIntVec(), CRegistryReadView::GetString(), kOrfFilters, kOrfGencode, kOrfMinPairs, kOrfStartOrf, COrfSearchForm::m_Gencode, COrfSearchForm::m_MinPairs, COrfSearchForm::m_StartOrf, COrfSearchForm::m_Tool, IDMSearchTool::TFilters::selected, and CSearchToolBase::SetFilters().

x_LoadSettings() [8/9]

void CSequenceSearchForm::x_LoadSettings ( const CRegistryReadView &  view )

protectedvirtual

Implements CSearchFormBase.

Definition at line 233 of file sequence_search_tool.cpp.

References CRegistryReadView::GetString(), kSeqPattern, and CSequenceSearchForm::m_SearchPattern.

x_LoadSettings() [9/9]

void CResolveIdDlg::x_LoadSettings ( const CRegistryReadView &  )

protectedvirtual

override these functions in derived classes

Reimplemented from CDialog.

Definition at line 377 of file resolve_id_dlg.cpp.

References CRegistryReadView::GetInt(), kCol0Width, kCol1Width, kCol2Width, and CResolveIdDlg::m_Grid.

x_MakeChanges()

void CAutodefJob::x_MakeChanges ( )

protectedvirtual

override this function in derived classes, populate m_TextResult

Implements CEditAppJob.

Definition at line 220 of file autodef_tool_manager.cpp.

References _ASSERT, CAutoDefModifierCombo::AddOrgMod(), CBioseq_EditHandle::AddSeqdesc(), CAutoDef::AddSources(), CAutoDefModifierCombo::AddSubsource(), CSerialObject::Assign(), CObjectConverter::Convert(), CSeqdesc_Base::e_Title, CSeqdesc_Base::e_User, CBioSource_Base::eGenome_unknown, entries, CUser_object::eObjectType_AutodefOptions, ITypeConverter::fConvert_NoExpensive, CBioseq_Handle::GetEditHandle(), CAutoDef::GetEmptyCombo(), ITypeConverter::SObject::GetObjectPtr(), CAutoDef::GetOneDefLine(), CAutoDef::GetOptionsObject(), CScope::GetSeq_entryHandle(), CBioseq_Handle::IsAa(), ITERATE, SAutodefParams::m_AltSpliceFlag, SAutodefParams::m_DoNotApplyToAff, SAutodefParams::m_DoNotApplyToCf, SAutodefParams::m_DoNotApplyToNr, SAutodefParams::m_DoNotApplyToSp, SAutodefParams::m_FeatureListType, SAutodefParams::m_GeneClusterOppStrand, SAutodefParams::m_HIVRule, SAutodefParams::m_IncludeCountryText, SAutodefParams::m_Keep3UTRs, SAutodefParams::m_Keep5UTRs, SAutodefParams::m_KeepAfterSemicolon, SAutodefParams::m_KeepExons, SAutodefParams::m_KeepIntrons, SAutodefParams::m_KeepRegulatoryFeatures, SAutodefParams::m_LeaveParenthetical, SAutodefParams::m_MaxMods, SAutodefParams::m_MiscFeatRule, SAutodefParams::m_ModifierList, SAutodefParams::m_NeedHIVRule, SAutodefParams::m_NuclearCopyFlag, CAutodefJob::m_Params, SAutodefParams::m_ProductFlag, SAutodefParams::m_SeqEntries, SAutodefParams::m_SpecifyNuclearProduct, SAutodefParams::m_SuppressedFeatures, SAutodefParams::m_SuppressFeatureAltSplice, SAutodefParams::m_SuppressLocusTags, SAutodefParams::m_SuppressMobileElementSubfeatures, SAutodefParams::m_UseFakePromoters, SAutodefParams::m_UseLabels, SAutodefParams::m_UseNcRNAComment, n, NON_CONST_ITERATE, CBioseq_EditHandle::RemoveSeqdesc(), CRef< C, Locker >::Reset(), CAutoDef::SetAltSpliceFlag(), CAutoDefModifierCombo::SetExcludeAffOrgs(), CAutoDefModifierCombo::SetExcludeCfOrgs(), CAutoDefModifierCombo::SetExcludeNrOrgs(), CAutoDefModifierCombo::SetExcludeSpOrgs(), CAutoDef::SetFeatureListType(), CAutoDef::SetGeneClusterOppStrand(), CAutoDefModifierCombo::SetHIVCloneIsolateRule(), CAutoDef::SetKeep3UTRs(), CAutoDef::SetKeep5UTRs(), CAutoDefModifierCombo::SetKeepAfterSemicolon(), CAutoDefModifierCombo::SetKeepCountryText(), CAutoDef::SetKeepExons(), CAutoDef::SetKeepIntrons(), CAutoDefModifierCombo::SetKeepParen(), CAutoDef::SetKeepRegulatoryFeatures(), CAutoDefModifierCombo::SetMaxModifiers(), CAutoDef::SetMiscFeatRule(), CAutoDef::SetNuclearCopyFlag(), CAutoDef::SetProductFlag(), CAutoDef::SetSpecifyNuclearProduct(), CAutoDef::SetSuppressFeatureAltSplice(), CAutoDef::SetSuppressLocusTags(), CSeqdesc_Base::SetTitle(), CAutoDef::SetUseFakePromoters(), CAutoDefModifierCombo::SetUseModifierLabels(), CAutoDef::SetUseNcRNAComment(), CSeqdesc_Base::SetUser(), CAutoDef::SuppressFeature(), and CAutoDef::SuppressMobileElementAndInsertionSequenceSubfeatures().

x_Match() [1/3]

bool CFeatureSearchJob::x_Match ( const objects::CGene_ref &  gene_ref ) const

protected

genes have a lot of embedded labels.

many of these are optional, so the checking is a bit tedious This could be done with CStdTypeConstIterator<>, but this would pick up an inadvertent db-tag that we don't really want to search

Definition at line 747 of file feature_search_tool.cpp.

References ITERATE, and CFeatureSearchJob::x_Match().

x_Match() [2/3]

bool CSequenceSearchJob::x_Match ( const string &  text )

protected

x_Match() [3/3]

bool CFeatureSearchJob::x_Match ( const string &  text ) const

protected

Definition at line 681 of file feature_search_tool.cpp.

References _ASSERT, NStr::eCase, CSearchToolBase::eExactMatch, CTempString::empty(), NStr::eNocase, CSearchToolBase::eRegexp, CSearchToolBase::eWildcard, NStr::Find(), CRegexp::GetMatch(), CFeatureSearchJob::m_CaseSensitive, CFeatureSearchJob::m_Pattern, CFeatureSearchJob::m_PatternType, CFeatureSearchJob::m_SearchStr, NStr::MatchesMask(), NPOS, and text().

x_MergeObjects() [1/3]

bool CSeqTextView::x_MergeObjects ( TConstScopedObjects &  objects )

protectedvirtual

Definition at line 362 of file seq_text_view.cpp.

References GetIdHandle(), CSeq_loc::GetTotalRange(), ITERATE, compile_time_bits::range(), CSeq_loc::SetId(), and CSeq_loc::SetInt().

Referenced by CSeqTextView::InitView().

x_MergeObjects() [2/3]

bool CFeatTableView::x_MergeObjects ( TConstScopedObjects &  objects )

protectedvirtual

Definition at line 681 of file view_feattable.cpp.

References GetIdHandle(), CSeq_loc::GetTotalRange(), ITERATE, compile_time_bits::range(), CSeq_loc::SetId(), and CSeq_loc::SetInt().

Referenced by CFeatTableView::InitView().

x_MergeObjects() [3/3]

bool CViewGraphic::x_MergeObjects ( TConstScopedObjects &  objects )

protectedvirtual

Definition at line 818 of file view_graphic.cpp.

References GetIdHandle(), CSeq_loc::GetTotalRange(), ITERATE, compile_time_bits::range(), CSeq_loc::SetId(), and CSeq_loc::SetInt().

Referenced by CViewGraphic::InitView().

x_NeedsConversion() [1/3]

bool CSeqTextViewFactory::x_NeedsConversion ( const CObject &  object, objects::CScope &  scope  )

private

Definition at line 343 of file seq_text_view.cpp.

References CSeq_annot::IsAlign(), CSeqTextViewFactory::IsCompatibleWith(), and type.

Referenced by CSeqTextViewFactory::TestInputObjects().

x_NeedsConversion() [2/3]

bool CFeatTableViewFactory::x_NeedsConversion ( const CObject &  object, objects::CScope &  scope  )

private

Definition at line 619 of file view_feattable.cpp.

References CSeq_annot::IsAlign(), CFeatTableViewFactory::IsCompatibleWith(), CSeq_entry_Base::IsSet(), and type.

Referenced by CFeatTableViewFactory::TestInputObjects().

x_NeedsConversion() [3/3]

bool CViewGraphicFactory::x_NeedsConversion ( const CObject &  object, objects::CScope &  scope  )

private

Definition at line 755 of file view_graphic.cpp.

References CSeq_annot::IsAlign(), CViewGraphicFactory::IsCompatibleWith(), CSeq_entry_Base::IsSet(), and type.

Referenced by CViewGraphicFactory::TestInputObjects().

x_OnFeatTableEvent()

void CFeatTableView::x_OnFeatTableEvent ( CEvent *  )

protected

Definition at line 460 of file view_feattable.cpp.

References CFeatTableView::x_UpdateStatusMessage().

x_OnRefreshData()

void CSequinDesktopView::x_OnRefreshData ( CEvent *  event )

protected

Definition at line 288 of file sequin_desktop_view.cpp.

References GetViewObjects(), CSeqDesktopPanel::InitWidget(), CSequinDesktopView::m_Window, and CProjectViewBase::m_Workbench.

x_OnSetSelection() [1/4]

void CSeqTextView::x_OnSetSelection ( CSelectionEvent &  evt )

protectedvirtual

override in derived classes in order to handle selection broadcast

override this function in derived classes

Reimplemented from CProjectView.

Definition at line 219 of file seq_text_view.cpp.

References CRangeCollection< Position >::Empty(), CSelectionEvent::GetAllObjects(), CSeqTextPanel::GetDataSource(), CSeqTextDataSource::GetId(), CSelectionEvent::GetRangeSelection(), CSeqTextPanel::GetWidget(), CSelectionEvent::HasObjectSelection(), CSelectionEvent::HasRangeSelection(), ITERATE, CSeqTextView::m_Window, CSeqTextWidget::ResetObjectSelection(), CSeqTextWidget::SelectObject(), CSeqTextWidget::SetRangeSelection(), CRangeCollection< Position >::size(), and CProjectViewBase::x_GetScope().

x_OnSetSelection() [2/4]

void CFeatTableView::x_OnSetSelection ( CSelectionEvent &  evt )

protectedvirtual

override in derived classes in order to handle selection broadcast

override this function in derived classes

Reimplemented from CProjectView.

Definition at line 374 of file view_feattable.cpp.

References CSelFeatHandle::GetFeatureRow(), ITERATE, results, and CFeatTableDS::SFeatureRow::row_idx.

x_OnSetSelection() [3/4]

void CSequinDesktopView::x_OnSetSelection ( CSelectionEvent &  evt )

protectedvirtual

override in derived classes in order to handle selection broadcast

override this function in derived classes

Reimplemented from CProjectView.

Definition at line 234 of file sequin_desktop_view.cpp.

References CSelectionEvent::GetAllObjects(), CSelectionEvent::GetOther(), CSequinDesktopView::m_Window, CSeqDesktopPanel::SetSelectedObjects(), and CProjectViewBase::x_HasProject().

x_OnSetSelection() [4/4]

void CTextView::x_OnSetSelection ( CSelectionEvent &  evt )

protectedvirtual

override in derived classes in order to handle selection broadcast

override this function in derived classes

Reimplemented from CProjectView.

Definition at line 290 of file text_view.cpp.

References CSelectionEvent::GetAllObjects(), CSelectionEvent::GetOther(), CTextView::m_Window, CTextPanel::SetSelectedObjects(), and CProjectViewBase::x_HasProject().

x_OnSingleMouseClick()

void CSequinDesktopView::x_OnSingleMouseClick ( CEvent *  event )

protected

Scrolls to the corresponding item in the Flat File View and selects it.

Definition at line 330 of file sequin_desktop_view.cpp.

References _ASSERT, CSequinDesktopView::GetMainObject(), CRef< C, Locker >::GetPointerOrNull(), CSequinDesktopView::GetSelection(), IServiceLocator::GetServiceByType(), CProjectViewBase::m_Workbench, and s_GetAccession().

x_PostAttachToProject()

void CFeatTableView::x_PostAttachToProject ( )

protectedvirtual

Reimplemented from CProjectView.

Definition at line 325 of file view_feattable.cpp.

References CFeatTableDS::Init(), CFeatTableView::m_DataSource, CFeatTableView::m_OrigObject, CFeatTableView::m_Scope, CFeatTableView::OnProjectChanged(), and CProjectViewBase::x_HasProject().

x_PreAttachToProject()

CScope * CFeatTableView::x_PreAttachToProject ( TConstScopedObjects &  objects )

protectedvirtual

Reimplemented from CProjectView.

Definition at line 285 of file view_feattable.cpp.

References CSeq_loc_Base::e_Whole, CConstRef< C, Locker >::IsNull(), CFeatTableView::m_OrigObject, CFeatTableView::m_Scope, NULL, CRef< C, Locker >::Reset(), CConstRef< C, Locker >::Reset(), and CSeq_loc::SetId().

x_ProccessText()

int CGenBankLoadOptionPanel::x_ProccessText ( const string &  text, vector< Token > &  tokens, ICanceled &  canceled  )

private

Definition at line 272 of file gb_load_option_panel.cpp.

References CScope::AddDefaults(), CSeq_id::Assign(), CSeq_id_Base::e_Local, eGetId_Best, NStr::fSplit_Tokenize, CSeq_id::GetAccType(), CSeq_id_Handle::GetHandle(), GetId(), CObjectManager::GetInstance(), CRef< C, Locker >::GetPointer(), CSeq_id_Handle::GetSeqId(), i, CSeq_id::IdentifyAccession(), int, ICanceled::IsCanceled(), CRegexp::IsMatch(), CSeqUtils::IsNAA(), CGenBankLoadOptionPanel::m_GenomicAccessions, CGenBankLoadOptionPanel::m_Ids, CGenBankLoadOptionPanel::m_NAs, compile_time_bits::range(), sDelim(), CSeq_interval_Base::SetId(), CSeq_loc::SetInt(), ncbi::grid::netcache::search::fields::size, sParseRange(), NStr::Split(), sRangeRegexp, text(), and NStr::ToUpper().

Referenced by CGenBankLoadOptionPanel::x_ValidateInput().

x_RebuildObjectIndex()

void CFeatTableView::x_RebuildObjectIndex ( )

protectedvirtual

Definition at line 494 of file view_feattable.cpp.

References CObjectIndex::Add(), CObjectIndex::Clear(), CFeatTableDS::GetNumRows(), CFeatTableDS::GetScope(), CFeatTableView::m_DataSource, CFeatTableView::m_ObjectIndex, and row.

x_SaveSettings() [1/9]

void CSNPSearchForm::x_SaveSettings ( CRegistryWriteView  view ) const

protectedvirtual

Implements CSearchFormBase.

Definition at line 181 of file snp_search_tool.cpp.

x_SaveSettings() [2/9]

void CCpgSearchForm::x_SaveSettings ( CRegistryWriteView  view ) const

protectedvirtual

Implements CSearchFormBase.

Definition at line 328 of file cpg_search_tool.cpp.

References kCpgAdjMergeTHreshold, kCpgMinGC, kCpgMinLenOfIsland, kCpgMinPercentage, kCpgSizeOfSlidingWindow, CCpgSearchForm::m_AdjMergeThresholdCtl, CCpgSearchForm::m_MinGCCtl, CCpgSearchForm::m_MinLenOfIslandCtl, CCpgSearchForm::m_MinPercentageCtl, CCpgSearchForm::m_SizeOfSlidingWindowCtl, CRegistryWriteView::Set(), and ToStdString().

x_SaveSettings() [3/9]

void CEntrezSearchForm::x_SaveSettings ( CRegistryWriteView  view ) const

protectedvirtual

Implements CSearchFormBase.

Definition at line 188 of file entrez_search_tool.cpp.

References kDatabaseTag, CEntrezSearchForm::m_DbCombo, CRegistryWriteView::Set(), and ToStdString().

x_SaveSettings() [4/9]

void CFeatureSearchForm::x_SaveSettings ( CRegistryWriteView  view ) const

protectedvirtual

Implements CSearchFormBase.

Definition at line 242 of file feature_search_tool.cpp.

References ITERATE, kFetPattern, kFetTypes, CSearchFormBase::m_FeatTypesSet, CFeatureSearchForm::m_TypeCombo, CRegistryWriteView::Set(), and ToStdString().

x_SaveSettings() [5/9]

void COrfSearchForm::x_SaveSettings ( CRegistryWriteView  view ) const

protectedvirtual

Implements CSearchFormBase.

Definition at line 303 of file orf_search_tool.cpp.

References CSearchToolBase::GetFilters(), kOrfFilters, kOrfGencode, kOrfMinPairs, kOrfStartOrf, COrfSearchForm::m_BasepairsText, COrfSearchForm::m_GencodeCombo, COrfSearchForm::m_StartorfCombo, COrfSearchForm::m_Tool, IDMSearchTool::TFilters::selected, CRegistryWriteView::Set(), and ToStdString().

x_SaveSettings() [6/9]

void CSequenceSearchForm::x_SaveSettings ( CRegistryWriteView  view ) const

protectedvirtual

Implements CSearchFormBase.

Definition at line 239 of file sequence_search_tool.cpp.

References kSeqPattern, CSequenceSearchForm::m_TypeCombo, CRegistryWriteView::Set(), and ToStdString().

x_SaveSettings() [7/9]

void CResolveIdDlg::x_SaveSettings ( CRegistryWriteView  view ) const

protectedvirtual

Reimplemented from CDialog.

Definition at line 387 of file resolve_id_dlg.cpp.

References kCol0Width, kCol1Width, kCol2Width, CResolveIdDlg::m_Grid, and CRegistryWriteView::Set().

x_SaveSettings() [8/9]

virtual void CComponentSearchForm::x_SaveSettings ( CRegistryWriteView  ) const

inlineprotectedvirtual

Implements CSearchFormBase.

Definition at line 136 of file component_search_tool.hpp.

x_SaveSettings() [9/9]

virtual void CVcfSearchForm::x_SaveSettings ( CRegistryWriteView  ) const

inlineprotectedvirtual

Implements CSearchFormBase.

Definition at line 136 of file vcf_search_tool.hpp.

x_SearchFeatures()

void CFeatureSearchJob::x_SearchFeatures ( TScopedLocs &  scoped_locs, const TFeatTypeItemSet &  feat_types  )

protected

x_SearchForSNP()

CSeq_feat_Handle CFeatureSearchJob::x_SearchForSNP ( const objects::CSeq_loc &  seq_loc, objects::CScope &  scope, const set< string > &  annot_names  )

protected

Definition at line 708 of file feature_search_tool.cpp.

References _ASSERT, CSeq_annot_Base::C_Data::e_Ftable, CSeqFeatData::eSubtype_variation, CSeqUtils::GetAnnotSelector(), CSeq_loc::GetId(), IsSameBioseq(), CFeatureSearchJob::m_SearchStr, and NSNPWebServices::Search().

Referenced by CFeatureSearchJob::x_SearchFeatures().

x_SearchSequence()

IAppJob::EJobState CSequenceSearchJob::x_SearchSequence ( TScopedLocs &  scoped_locs )

protected

Definition at line 623 of file sequence_search_tool.cpp.

References CSeq_id::Assign(), set< Key, Compare >::clear(), data, CSeqUtil::e_Iupacna, IAppJob::eCanceled, CBioseq_Handle::eCoding_Iupac, IAppJob::eCompleted, CLabel::eDefault, IDMSearchTool::TFilters::filters, CSeq_interval_Base::GetFrom(), CSeq_id_Handle::GetHandle(), GetId(), CSeq_loc::GetId(), CSeq_loc_Base::GetInt(), CLabel::GetLabel(), CSeqVector::GetSeqData(), CSeq_id_Handle::GetSeqId(), CJobCancelable::IsCanceled(), CSeq_loc_Base::IsInt(), ITERATE, kMaxResults, len, CSearchQueryBase::SScopedLoc::m_ContextName, CSearchJobBase::m_Filters, CSearchQueryBase::SScopedLoc::m_Loc, CSearchJobBase::m_Mutex, CSearchJobBase::m_ProgressStr, CSearchJobBase::m_ResultsCount, CSearchQueryBase::SScopedLoc::m_Scope, min(), NON_CONST_ITERATE, compile_time_bits::range(), CSeqManip::ReverseComplement(), IDMSearchTool::TFilters::selected, set< Key, Compare >::size(), CSeqVector::size(), rapidjson::value, CSequenceSearchJob::x_AddToResults(), CSequenceSearchJob::x_GetMatches(), and CSequenceSearchJob::x_GetSequence().

Referenced by CSequenceSearchJob::x_DoSearch().

x_SelectCompatibleInputObjects() [1/4]

void CCleanupTool::x_SelectCompatibleInputObjects ( )

protectedvirtual

Definition at line 143 of file cleanup_tool.cpp.

References CAlgoToolManagerBase::m_InputObjects, CCleanupTool::m_Objects, and NON_CONST_ITERATE.

Referenced by CCleanupTool::x_CreateParamsPanelIfNeeded().

x_SelectCompatibleInputObjects() [2/4]

void CMergeTool::x_SelectCompatibleInputObjects ( )

protectedvirtual

Definition at line 140 of file merge_tool.cpp.

References map_checker< Container >::clear(), CAlgoToolManagerBase::m_InputObjects, CMergeTool::m_Objects, and NON_CONST_ITERATE.

Referenced by CMergeTool::x_CreateParamsPanelIfNeeded().

x_SelectCompatibleInputObjects() [3/4]

void CAutodefToolManager::x_SelectCompatibleInputObjects ( )

protectedvirtual

select only Seq-entries

Definition at line 132 of file autodef_tool_manager.cpp.

References CAutoDef::AddSources(), CAutoDef::FindBestModifierCombo(), SAutodefParams::m_ModifierList, SAutodefParams::m_NeedHIVRule, CAutodefToolManager::m_Params, SAutodefParams::m_SeqEntries, CAutodefToolManager::m_SeqEntries, n, NON_CONST_ITERATE, and CAlgoToolManagerBase::x_ConvertInputObjects().

Referenced by CAutodefToolManager::x_CreateParamsPanelIfNeeded().

x_SelectCompatibleInputObjects() [4/4]

void CSrcEditTool::x_SelectCompatibleInputObjects ( )

protectedvirtual

Definition at line 153 of file srcedit_tool.cpp.

References ITERATE, CAlgoToolManagerBase::m_InputObjects, and CSrcEditTool::m_Objects.

Referenced by CSrcEditTool::x_CreateParamsPanelIfNeeded().

x_SetNonAsnInput()

void CViewGraphic::x_SetNonAsnInput ( const objects::CProjectFolder &  prj_folder )

protected

Definition at line 904 of file view_graphic.cpp.

References EXT_POINT__NONASN_TRACK_DATA_FACTORY, GetExtensionAsInterface(), CGraphicPanel::GetWidget(), CRef< C, Locker >::IsNull(), CViewGraphic::m_GraphicPanel, CViewGraphic::m_NonAsnTrackData, CViewGraphic::m_SeqId, CRef< C, Locker >::Reset(), and CSeqGraphicWidget::SetNonAsnInput().

Referenced by CViewGraphic::InitView(), and CViewGraphic::OnProjectChanged().

x_SetParseSeqId()

void CGffParamsPanel::x_SetParseSeqId ( int  val )

private

Definition at line 304 of file gff_params_panel.cpp.

References CGffParamsPanel::GetData(), CGffParamsPanel::ID_SEQ_ID_LOCAL, CGffParamsPanel::ID_SEQ_ID_NORMAL, CGffParamsPanel::IDSEQ_ID_NUMERIC, CGffLoadParams::SetParseSeqIds(), and val.

Referenced by CGffParamsPanel::OnParseSeqIdLocalSelected(), CGffParamsPanel::OnParseSeqIdNormalSelected(), CGffParamsPanel::OnParseSeqIdNumericSelected(), and CGffParamsPanel::TransferDataToWindow().

x_SetupColumns() [1/7]

void CSNPSearchJob::x_SetupColumns ( CObjectList &  obj_list )

protectedvirtual

add custom columns if needed

Reimplemented from CSearchJobBase.

Definition at line 315 of file snp_search_tool.cpp.

References CObjectList::AddColumn(), CObjectList::AddObjectLabel(), CObjectList::ClearObjectLabels(), CLabel::eContent, CObjectList::eInteger, and CObjectList::eString.

x_SetupColumns() [2/7]

void CComponentSearchJob::x_SetupColumns ( CObjectList &  obj_list )

protectedvirtual

add custom columns if needed

Reimplemented from CSearchJobBase.

Definition at line 299 of file component_search_tool.cpp.

References CObjectList::AddColumn(), and CObjectList::eString.

x_SetupColumns() [3/7]

void CCpgSearchJob::x_SetupColumns ( CObjectList &  obj_list )

protectedvirtual

add custom columns if needed

Reimplemented from CSearchJobBase.

Definition at line 642 of file cpg_search_tool.cpp.

References CObjectList::AddColumn(), CObjectList::AddObjectLabel(), CObjectList::ClearObjectLabels(), CLabel::eContent, CObjectList::eInteger, and CObjectList::eString.

x_SetupColumns() [4/7]

void CFeatureSearchJob::x_SetupColumns ( CObjectList &  obj_list )

protectedvirtual

add custom columns if needed

Reimplemented from CSearchJobBase.

Definition at line 472 of file feature_search_tool.cpp.

References CObjectList::AddColumn(), and CObjectList::eString.

x_SetupColumns() [5/7]

void COrfSearchJob::x_SetupColumns ( CObjectList &  obj_list )

protectedvirtual

add custom columns if needed

Reimplemented from CSearchJobBase.

Definition at line 835 of file orf_search_tool.cpp.

References CObjectList::AddColumn(), CObjectList::AddObjectLabel(), CObjectList::ClearObjectLabels(), CLabel::eContent, CObjectList::eInteger, CObjectList::eString, and COrfSearchJob::m_ColorCol.

x_SetupColumns() [6/7]

void CSequenceSearchJob::x_SetupColumns ( CObjectList &  obj_list )

protectedvirtual

add custom columns if needed

Reimplemented from CSearchJobBase.

Definition at line 599 of file sequence_search_tool.cpp.

References CObjectList::AddColumn(), CObjectList::AddObjectLabel(), CObjectList::ClearObjectLabels(), CLabel::eContent, CObjectList::eInteger, CSearchToolBase::eNamed, CObjectList::eString, and CSequenceSearchJob::m_PatternType.

x_SetupColumns() [7/7]

void CVcfSearchJob::x_SetupColumns ( CObjectList &  obj_list )

protectedvirtual

add custom columns if needed

Reimplemented from CSearchJobBase.

Definition at line 262 of file vcf_search_tool.cpp.

References CSearchJobBase::x_SetupColumns().

x_SetVisibleRange()

void CFeatTableView::x_SetVisibleRange ( const objects::CSeq_loc &  loc )

protectedvirtual

Definition at line 416 of file view_feattable.cpp.

References CFeatTableView::m_FTblWidget, and CFeatTableWidget::SetVisibleRange().

x_Update()

void CFeatTableView::x_Update ( )

protectedvirtual

Definition at line 421 of file view_feattable.cpp.

References CFeatTableView::m_FTblWidget, CFeatTableView::m_StatusBar, CFeatTableWidget::Update(), wxT, and CProjectViewBase::x_HasProject().

Referenced by CFeatTableView::OnProjectChanged().

x_UpdateFileList()

void CSequenceSearchForm::x_UpdateFileList ( void  )

protected

Definition at line 444 of file sequence_search_tool.cpp.

References _ASSERT, map_checker< Container >::clear(), CNcbiRegistry::ePersistent, NStr::fSplit_Tokenize, IRegistry::Get(), CNcbiApplicationAPI::GetConfig(), CNcbiApplication::Instance(), ITERATE, CSequenceSearchForm::m_FileList, patterns, registry, CSysPath::ResolvePath(), IRWRegistry::Set(), NStr::Split(), and wxT.

Referenced by CSequenceSearchForm::Init().

x_UpdateKozak()

void COrfSearchForm::x_UpdateKozak ( void  )

protected

Definition at line 412 of file orf_search_tool.cpp.

References _ASSERT, CNcbiRegistry::ePersistent, IRegistry::eReturn, NStr::fSplit_Tokenize, IRegistry::Get(), CNcbiApplicationAPI::GetConfig(), CNcbiApplication::Instance(), ITERATE, kKozakFile, COrfSearchForm::m_Kozak, patterns, registry, CSysPath::ResolvePath(), IRWRegistry::Set(), NStr::Split(), and wxT.

Referenced by COrfSearchForm::Init().

x_UpdateStatusMessage()

void CFeatTableView::x_UpdateStatusMessage ( )

protectedvirtual

Definition at line 434 of file view_feattable.cpp.

References CFeatTableDS::GetNumRows(), CwxTableListCtrl::GetNumRowsVisible(), NStr::IntToString(), CFeatTableView::m_DataSource, CFeatTableView::m_FTblWidget, CFeatTableView::m_StatusBar, and ToWxString().

Referenced by CFeatTableView::OnWidgetRangeChanged(), CFeatTableView::OnWidgetSelChanged(), and CFeatTableView::x_OnFeatTableEvent().

x_UpdateVisRangeLayout()

void CViewGraphic::x_UpdateVisRangeLayout ( const IViewManagerService::TViews &  views )

protected

Definition at line 546 of file view_graphic.cpp.

References color, Error(), CProjectViewBase::GetId(), CProjectView::GetReflectionInfo(), CGraphicPanel::GetWidget(), ITERATE, label, LOG_POST, CViewGraphic::m_GraphicPanel, CViewGraphic::m_SeqId, and CSeqGraphicWidget::SetExternalGlyphs().

Referenced by CViewGraphic::OnViewAttached(), CViewGraphic::OnViewReleased(), CViewGraphic::OnVisibleRangeChanged(), and CViewGraphic::OnWidgetRangeChanged().

x_ValidateInput()

void CGenBankLoadOptionPanel::x_ValidateInput ( )

private

Definition at line 390 of file gb_load_option_panel.cpp.

References GUI_AsyncExec(), i, int, CGenBankLoadOptionPanel::m_AccInput, CGenBankLoadOptionPanel::m_DefStyle, CGenBankLoadOptionPanel::m_ErrNum, CGenBankLoadOptionPanel::m_ErrStyle, CGenBankLoadOptionPanel::m_TokensNum, CGenBankLoadOptionPanel::m_ValidTokens, text(), ToStdString(), NStr::TruncateSpacesInPlace(), rapidjson::value, wxT, and CGenBankLoadOptionPanel::x_ProccessText().

Referenced by CGenBankLoadOptionPanel::IsInputValid(), and CGenBankLoadOptionPanel::OnAccInputUpdated().

x_ValidateParams() [1/12]

bool CCleanupTool::x_ValidateParams ( )

protectedvirtual

validates user input in Parameters panel, report errors if any

validate parameters after Params page override this function in derived classes

Reimplemented from CAlgoToolManagerBase.

Definition at line 138 of file cleanup_tool.cpp.

x_ValidateParams() [2/12]

bool CMergeTool::x_ValidateParams ( )

protectedvirtual

validates user input in Parameters panel, report errors if any

validate parameters after Params page override this function in derived classes

Reimplemented from CAlgoToolManagerBase.

Definition at line 166 of file merge_tool.cpp.

x_ValidateParams() [3/12]

bool CSNPSearchJob::x_ValidateParams ( )

protectedvirtual

returns true if Job params are correct, implement in derived classes

Implements CSearchJobBase.

Definition at line 230 of file snp_search_tool.cpp.

References CSNPSearchQuery::GetTerms(), CSearchJobBase::m_Error, and CSNPSearchJob::m_Query.

x_ValidateParams() [4/12]

bool CAutodefToolManager::x_ValidateParams ( )

protectedvirtual

validates user input in Parameters panel, report errors if any

validate parameters after Params page override this function in derived classes

Reimplemented from CAlgoToolManagerBase.

Definition at line 117 of file autodef_tool_manager.cpp.

References CUIObject::GetLabel(), CAlgoToolManagerBase::m_Descriptor, CAutodefToolManager::m_Params, SAutodefParams::m_SeqEntries, and NcbiErrorBox().

x_ValidateParams() [5/12]

bool CSrcEditTool::x_ValidateParams ( )

protectedvirtual

validates user input in Parameters panel, report errors if any

validate parameters after Params page override this function in derived classes

Reimplemented from CAlgoToolManagerBase.

Definition at line 148 of file srcedit_tool.cpp.

x_ValidateParams() [6/12]

bool CComponentSearchJob::x_ValidateParams ( )

protectedvirtual

returns true if Job params are correct, implement in derived classes

Implements CSearchJobBase.

Definition at line 285 of file component_search_tool.cpp.

References false, CComponentSearchQuery::GetIds(), CSearchQueryBase::GetScopedLocs(), CSearchJobBase::m_Error, CComponentSearchJob::m_Query, and CRef< C, Locker >::Reset().

x_ValidateParams() [7/12]

bool CCpgSearchJob::x_ValidateParams ( )

protectedvirtual

returns true if Job params are correct, implement in derived classes

Implements CSearchJobBase.

Definition at line 531 of file cpg_search_tool.cpp.

References false, CSearchQueryBase::GetScopedLocs(), CSearchJobBase::m_Error, CCpgSearchJob::m_Query, and CRef< C, Locker >::Reset().

x_ValidateParams() [8/12]

bool CEntrezSearchJob::x_ValidateParams ( )

protectedvirtual

returns true if Job params are correct, implement in derived classes

Implements CSearchJobBase.

Definition at line 275 of file entrez_search_tool.cpp.

References CEntrezSearchQuery::GetTerms(), CSearchJobBase::m_Error, and CEntrezSearchJob::m_Query.

x_ValidateParams() [9/12]

virtual bool CFeatureSearchJob::x_ValidateParams ( )

protectedvirtual

returns true if Job params are correct, implement in derived classes

Implements CSearchJobBase.

x_ValidateParams() [10/12]

bool COrfSearchJob::x_ValidateParams ( )

protectedvirtual

returns true if Job params are correct, implement in derived classes

Implements CSearchJobBase.

Definition at line 580 of file orf_search_tool.cpp.

References false, CSearchQueryBase::GetScopedLocs(), CSearchJobBase::m_Error, COrfSearchJob::m_Query, and CRef< C, Locker >::Reset().

x_ValidateParams() [11/12]

bool CSequenceSearchJob::x_ValidateParams ( )

protectedvirtual

returns true if Job params are correct, implement in derived classes

Implements CSearchJobBase.

Definition at line 539 of file sequence_search_tool.cpp.

References false, CSequenceSearchQuery::GetPattern(), CSearchQueryBase::GetScopedLocs(), CSearchJobBase::m_Error, CSequenceSearchJob::m_Query, and CRef< C, Locker >::Reset().

x_ValidateParams() [12/12]

bool CVcfSearchJob::x_ValidateParams ( )

protectedvirtual

returns true if Job params are correct, implement in derived classes

Implements CSearchJobBase.

Definition at line 251 of file vcf_search_tool.cpp.

References false, CVcfSearchQuery::GetIds(), CSearchJobBase::m_Error, CVcfSearchJob::m_Query, and CRef< C, Locker >::Reset().

~CCleanupPanel()

CCleanupPanel::~CCleanupPanel

(

)

Destructor.

CCleanupPanel destructor

Definition at line 106 of file cleanup_panel.cpp.

~CCleanupParams()

CCleanupParams::~CCleanupParams

(

)

Destructor for CCleanupParams.

Destructor for CCleanupParams

Definition at line 65 of file cleanup_params.cpp.

~CCpgSearchForm()

CCpgSearchForm::~CCpgSearchForm

(

)

Definition at line 304 of file cpg_search_tool.cpp.

~CFASTAFormatParamsPanel()

CFASTAFormatParamsPanel::~CFASTAFormatParamsPanel

(

)

Definition at line 91 of file fasta_format_params_panel.cpp.

~CFastaLoadParams()

CFastaLoadParams::~CFastaLoadParams

(

)

Destructor for CFastaLoadParams.

Destructor for CFastaLoadParams

Definition at line 65 of file fasta_load_params.cpp.

~CFeatureSearchForm()

CFeatureSearchForm::~CFeatureSearchForm

(

)

Definition at line 178 of file feature_search_tool.cpp.

~CGenBankLoadOptionPanel()

CGenBankLoadOptionPanel::~CGenBankLoadOptionPanel

(

)

Definition at line 105 of file gb_load_option_panel.cpp.

~CGenBankUIDataSource()

CGenBankUIDataSource::~CGenBankUIDataSource

(

)

Definition at line 118 of file gb_ui_data_source.cpp.

~CGffLoadParams()

CGffLoadParams::~CGffLoadParams

(

)

Destructor for CGffLoadParams.

Destructor for CGffLoadParams

Definition at line 67 of file gff_load_params.cpp.

~CGffParamsPanel()

CGffParamsPanel::~CGffParamsPanel

(

)

Destructor.

CGffParamsPanel destructor

Definition at line 122 of file gff_params_panel.cpp.

~COrfSearchForm()

COrfSearchForm::~COrfSearchForm

(

)

Definition at line 274 of file orf_search_tool.cpp.

~CResolveIdDlg()

CResolveIdDlg::~CResolveIdDlg

(

)

Destructor.

CResolveIdDlg destructor

Definition at line 311 of file resolve_id_dlg.cpp.

~CSequenceSearchForm()

CSequenceSearchForm::~CSequenceSearchForm

(

)

Definition at line 218 of file sequence_search_tool.cpp.

~CSequinDesktopView()

CSequinDesktopView::~CSequinDesktopView

(

)

Definition at line 88 of file sequin_desktop_view.cpp.

~CSrcEditParams()

CSrcEditParams::~CSrcEditParams

(

)

Destructor for CSrcEditParams.

Destructor for CCleanupParams

Definition at line 65 of file srcedit_params.cpp.

~CTextView()

CTextView::~CTextView

(

)

Definition at line 79 of file text_view.cpp.

References IServiceLocator::GetServiceByType(), CTextView::m_UsingStatusBar, and CProjectViewBase::m_Workbench.

~CViewGraphic()

CViewGraphic::~CViewGraphic

(

)

Definition at line 99 of file view_graphic.cpp.

Variable Documentation

m_Accession

string CGenBankLoadOptionPanel::CAccDescriptor::m_Accession

private

Definition at line 94 of file gb_load_option_panel.hpp.

Referenced by CGenBankLoadOptionPanel::CAccDescriptor::GetAccession(), and CGenBankLoadOptionPanel::CAccDescriptor::operator==().

m_Accessions

vector<string> CAssemblyObjectLoader::m_Accessions

private

Definition at line 83 of file assembly_object_loader.hpp.

Referenced by CAssemblyObjectLoader::CAssemblyObjectLoader(), and CAssemblyObjectLoader::Execute().

m_AccInput

CRichTextCtrl* CGenBankLoadOptionPanel::m_AccInput

Definition at line 132 of file gb_load_option_panel.hpp.

Referenced by CGenBankLoadOptionPanel::CreateControls(), CGenBankLoadOptionPanel::GetInput(), CGenBankLoadOptionPanel::Init(), CGenBankLoadOptionPanel::OnAccInputUpdated(), CGenBankLoadOptionPanel::OnRecentAccClicked(), CGenBankLoadOptionPanel::SetInput(), and CGenBankLoadOptionPanel::x_ValidateInput().

m_AccMRUList

TMRUAccList CGenBankLoadOptionPanel::m_AccMRUList

private

Definition at line 184 of file gb_load_option_panel.hpp.

Referenced by CGenBankLoadOptionPanel::LoadSettings(), CGenBankLoadOptionPanel::SaveMruAccessions(), and CGenBankLoadOptionPanel::x_FillMRUList().

m_AdjMergeThreshold [1/2]

string CCpgSearchQuery::m_AdjMergeThreshold

protected

Definition at line 118 of file cpg_search_tool.hpp.

Referenced by CCpgSearchQuery::GetAdjMergeThreshold(), and CCpgSearchQuery::ToString().

m_AdjMergeThreshold [2/2]

string CCpgSearchForm::m_AdjMergeThreshold

protected

Definition at line 166 of file cpg_search_tool.hpp.

Referenced by CCpgSearchForm::GetWidget(), and CCpgSearchForm::x_LoadSettings().

m_AdjMergeThresholdCtl

wxTextCtrl* CCpgSearchForm::m_AdjMergeThresholdCtl

protected

Definition at line 158 of file cpg_search_tool.hpp.

Referenced by CCpgSearchForm::ConstructQuery(), CCpgSearchForm::GetWidget(), and CCpgSearchForm::x_SaveSettings().

m_AnnotNames

set<string> CFeatureSearchQuery::m_AnnotNames

protected

Feature types to search.

Definition at line 119 of file feature_search_tool.hpp.

m_AssemblyPanel [1/2]

CAssemblySelPanel* CGffParamsPanel::m_AssemblyPanel

Definition at line 129 of file gff_params_panel.hpp.

Referenced by CGffParamsPanel::CreateControls(), CGffParamsPanel::Init(), CGffParamsPanel::TransferDataFromWindow(), and CGffParamsPanel::TransferDataToWindow().

m_AssemblyPanel [2/2]

CVcfAssemblySelectionPanel* CColumnarVCFLoaderManager::m_AssemblyPanel

protected

Definition at line 160 of file columnar_vcf_load_manager.hpp.

Referenced by CColumnarVCFLoaderManager::CleanUI(), CColumnarVCFLoaderManager::DoTransition(), CColumnarVCFLoaderManager::GetCurrentPanel(), CColumnarVCFLoaderManager::LoadSettings(), and CColumnarVCFLoaderManager::SaveSettings().

m_AssmAcc

string CColumnarVCFLoaderManager::m_AssmAcc

protected

Definition at line 151 of file columnar_vcf_load_manager.hpp.

Referenced by CColumnarVCFLoaderManager::DoTransition(), and CColumnarVCFLoaderManager::x_GetRefSeqs().

m_BasepairsText

wxTextCtrl* COrfSearchForm::m_BasepairsText

protected

Definition at line 164 of file orf_search_tool.hpp.

Referenced by COrfSearchForm::ConstructQuery(), COrfSearchForm::GetWidget(), and COrfSearchForm::x_SaveSettings().

m_CaseSensitive [1/3]

bool CFeatureSearchJob::m_CaseSensitive

protected

regular expression to apply

Definition at line 154 of file seqloc_tool_base.hpp.

Referenced by CFeatureSearchJob::x_DoSearch(), and CFeatureSearchJob::x_Match().

m_CaseSensitive [2/3]

bool CFeatureSearchQuery::m_CaseSensitive

protected

Definition at line 117 of file feature_search_tool.hpp.

Referenced by CFeatureSearchQuery::GetCaseSensitive().

m_CaseSensitive [3/3]

bool CFeatureSearchForm::m_CaseSensitive

protected

Definition at line 171 of file feature_search_tool.hpp.

m_CleanupMode

int CCleanupParams::m_CleanupMode

private

Definition at line 92 of file cleanup_params.hpp.

Referenced by CCleanupParams::Copy(), CCleanupParams::GetCleanupMode(), CCleanupParams::Init(), CCleanupParams::LoadSettings(), CCleanupParams::operator==(), CCleanupParams::SaveSettings(), and CCleanupParams::SetCleanupMode().

m_Codon_pos

int COrfSearchForm::SKozakPattern::m_Codon_pos

Definition at line 131 of file orf_search_tool.hpp.

m_ColorCol

int COrfSearchJob::m_ColorCol

protected

Definition at line 218 of file orf_search_tool.hpp.

Referenced by COrfSearchJob::x_GetNewOLTModel(), and COrfSearchJob::x_SetupColumns().

m_ColumnsPanel

CVcfColumnSelectionPanel* CColumnarVCFLoaderManager::m_ColumnsPanel

protected

Definition at line 158 of file columnar_vcf_load_manager.hpp.

Referenced by CColumnarVCFLoaderManager::CleanUI(), CColumnarVCFLoaderManager::GetCurrentPanel(), and CColumnarVCFLoaderManager::GetTask().

m_CurrDbName

string CEntrezSearchForm::m_CurrDbName

protected

Entrez db names.

Definition at line 143 of file entrez_search_tool.hpp.

Referenced by CEntrezSearchForm::Init(), CEntrezSearchForm::Update(), and CEntrezSearchForm::x_LoadSettings().

m_CurrentFile

wxString CBedObjectLoader::m_CurrentFile

private

Definition at line 82 of file bed_object_loader.hpp.

Referenced by CBedObjectLoader::Execute().

m_data [1/3]

CCleanupParams CCleanupPanel::m_data

The data edited by this window.

Definition at line 131 of file cleanup_panel.hpp.

Referenced by CCleanupPanel::GetData(), and CCleanupPanel::SetData().

m_data [2/3]

CFastaLoadParams CFASTAFormatParamsPanel::m_data

@begin CFASTAFormatParamsPanel member variables

The data edited by this window

Definition at line 105 of file fasta_format_params_panel.hpp.

Referenced by CFASTAFormatParamsPanel::GetData(), and CFASTAFormatParamsPanel::SetData().

m_data [3/3]

CGffLoadParams CGffParamsPanel::m_data

The data edited by this window.

Definition at line 131 of file gff_params_panel.hpp.

Referenced by CGffParamsPanel::GetData(), and CGffParamsPanel::SetData().

m_DataSource

CRef<CFeatTableDS> CFeatTableView::m_DataSource

private

Definition at line 155 of file view_feattable.hpp.

Referenced by CFeatTableView::CreateViewWindow(), CFeatTableView::DestroyViewWindow(), CFeatTableView::x_PostAttachToProject(), CFeatTableView::x_RebuildObjectIndex(), and CFeatTableView::x_UpdateStatusMessage().

m_DbCombo [1/7]

wxChoice* CComponentSearchForm::m_DbCombo

protected

Definition at line 139 of file component_search_tool.hpp.

Referenced by CComponentSearchForm::ConstructQuery(), CComponentSearchForm::GetWidget(), and CComponentSearchForm::Update().

m_DbCombo [2/7]

wxChoice* CCpgSearchForm::m_DbCombo

protected

Definition at line 153 of file cpg_search_tool.hpp.

Referenced by CCpgSearchForm::ConstructQuery(), CCpgSearchForm::GetWidget(), and CCpgSearchForm::Update().

m_DbCombo [3/7]

wxChoice* CEntrezSearchForm::m_DbCombo

protected

techical name

Definition at line 144 of file entrez_search_tool.hpp.

Referenced by CEntrezSearchForm::ConstructQuery(), CEntrezSearchForm::GetWidget(), CEntrezSearchForm::Update(), and CEntrezSearchForm::x_SaveSettings().

m_DbCombo [4/7]

wxChoice* CFeatureSearchForm::m_DbCombo

protected

Definition at line 166 of file feature_search_tool.hpp.

Referenced by CFeatureSearchForm::ConstructQuery(), CFeatureSearchForm::GetWidget(), and CFeatureSearchForm::Update().

m_DbCombo [5/7]

wxChoice* COrfSearchForm::m_DbCombo

protected

Definition at line 161 of file orf_search_tool.hpp.

Referenced by COrfSearchForm::ConstructQuery(), COrfSearchForm::GetWidget(), and COrfSearchForm::Update().

m_DbCombo [6/7]

wxChoice* CSequenceSearchForm::m_DbCombo

protected

Definition at line 163 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchForm::ConstructQuery(), CSequenceSearchForm::GetWidget(), and CSequenceSearchForm::Update().

m_DbCombo [7/7]

wxChoice* CVcfSearchForm::m_DbCombo

protected

Definition at line 139 of file vcf_search_tool.hpp.

Referenced by CVcfSearchForm::ConstructQuery(), CVcfSearchForm::GetWidget(), and CVcfSearchForm::Update().

m_DbName

string CEntrezSearchQuery::m_DbName

protected

Definition at line 103 of file entrez_search_tool.hpp.

Referenced by CEntrezSearchQuery::GetDbName(), and CEntrezSearchQuery::ToString().

m_DbNames

TNamePairs CEntrezSearchForm::m_DbNames

protected

Definition at line 142 of file entrez_search_tool.hpp.

Referenced by CEntrezSearchForm::Init(), and CEntrezSearchForm::Update().

m_DefStyle

wxTextAttr CGenBankLoadOptionPanel::m_DefStyle

private

Definition at line 173 of file gb_load_option_panel.hpp.

Referenced by CGenBankLoadOptionPanel::CreateControls(), and CGenBankLoadOptionPanel::x_ValidateInput().

m_Descr [1/14]

CUIObject CGBFlatFileLoadManager::m_Descr

protected

Definition at line 138 of file gb_flatfile_load_manager.hpp.

Referenced by CGBFlatFileLoadManager::CGBFlatFileLoadManager(), CGBFlatFileLoadManager::GetDescriptor(), and CGBFlatFileLoadManager::GetLabel().

m_Descr [2/14]

CUIObject CGenBankUIDataSource::m_Descr

protected

Definition at line 118 of file gb_ui_data_source.hpp.

Referenced by CGenBankUIDataSource::GetDescr().

m_Descr [3/14]

CUIObject CGenBankUIDataSourceType::m_Descr

protected

Definition at line 151 of file gb_ui_data_source.hpp.

Referenced by CGenBankUIDataSourceType::GetDescr(), and CGenBankUIDataSourceType::GetExtensionLabel().

m_Descr [4/14]

string CAssemblyObjectLoader::m_Descr

private

Definition at line 85 of file assembly_object_loader.hpp.

Referenced by CAssemblyObjectLoader::CAssemblyObjectLoader(), and CAssemblyObjectLoader::GetDescription().

m_Descr [5/14]

CUIObject CPhyLoader::m_Descr

protected

Definition at line 129 of file phy_loader.hpp.

Referenced by CPhyLoader::CPhyLoader(), CPhyLoader::GetDescriptor(), and CPhyLoader::GetLabel().

m_Descr [6/14]

CUIObject CRMLoader::m_Descr

protected

Definition at line 110 of file rm_load_manager.hpp.

Referenced by CRMLoader::CRMLoader(), CRMLoader::GetDescriptor(), and CRMLoader::GetLabel().

m_Descr [7/14]

CUIObject C5ColLoadManager::m_Descr

protected

Definition at line 126 of file 5col_load_manager.hpp.

Referenced by C5ColLoadManager::C5ColLoadManager(), C5ColLoadManager::GetDescriptor(), and C5ColLoadManager::GetLabel().

m_Descr [8/14]

CUIObject CAgpLoader::m_Descr

protected

Definition at line 144 of file agp_loader.hpp.

Referenced by CAgpLoader::CAgpLoader(), CAgpLoader::GetDescriptor(), and CAgpLoader::GetLabel().

m_Descr [9/14]

CUIObject CBedLoadManager::m_Descr

protected

Definition at line 144 of file bed_load_manager.hpp.

Referenced by CBedLoadManager::CBedLoadManager(), CBedLoadManager::GetDescriptor(), and CBedLoadManager::GetLabel().

m_Descr [10/14]

CUIObject CColumnarVCFLoaderManager::m_Descr

protected

Definition at line 142 of file columnar_vcf_load_manager.hpp.

Referenced by CColumnarVCFLoaderManager::CColumnarVCFLoaderManager(), CColumnarVCFLoaderManager::GetDescriptor(), and CColumnarVCFLoaderManager::GetLabel().

m_Descr [11/14]

CUIObject CFASTAFormatLoadManager::m_Descr

protected

Definition at line 143 of file fasta_format_load_manager.hpp.

Referenced by CFASTAFormatLoadManager::CFASTAFormatLoadManager(), CFASTAFormatLoadManager::GetDescriptor(), and CFASTAFormatLoadManager::GetLabel().

m_Descr [12/14]

CUIObject CGffLoadManager::m_Descr

protected

Definition at line 155 of file gff_load_manager.hpp.

Referenced by CGffLoadManager::CGffLoadManager(), CGffLoadManager::GetDescriptor(), and CGffLoadManager::GetLabel().

m_Descr [13/14]

CUIObject CVCFLoaderManager::m_Descr

protected

Definition at line 142 of file vcf_load_manager.hpp.

Referenced by CVCFLoaderManager::CVCFLoaderManager(), CVCFLoaderManager::GetDescriptor(), and CVCFLoaderManager::GetLabel().

m_Descr [14/14]

CUIObject CWigLoadManager::m_Descr

protected

Definition at line 144 of file wig_load_manager.hpp.

Referenced by CWigLoadManager::CWigLoadManager(), CWigLoadManager::GetDescriptor(), and CWigLoadManager::GetLabel().

m_Descriptor

CUIObject CGenBankUILoadManager::m_Descriptor

protected

Definition at line 203 of file gb_ui_data_source.hpp.

Referenced by CGenBankUILoadManager::CGenBankUILoadManager(), and CGenBankUILoadManager::GetDescriptor().

m_ErrNum

int CGenBankLoadOptionPanel::m_ErrNum

private

Definition at line 176 of file gb_load_option_panel.hpp.

Referenced by CGenBankLoadOptionPanel::Init(), CGenBankLoadOptionPanel::IsInputValid(), and CGenBankLoadOptionPanel::x_ValidateInput().

m_ErrStyle

wxTextAttr CGenBankLoadOptionPanel::m_ErrStyle

private

Definition at line 174 of file gb_load_option_panel.hpp.

Referenced by CGenBankLoadOptionPanel::CreateControls(), and CGenBankLoadOptionPanel::x_ValidateInput().

m_ExecuteUnits

vector<CIRef<IExecuteUnit> > CChainLoader::m_ExecuteUnits

private

Definition at line 76 of file chain_loader.hpp.

Referenced by CChainLoader::Add(), CChainLoader::Execute(), CChainLoader::PostExecute(), and CChainLoader::PreExecute().

m_FeatTypesSet

TFeatTypeItemSet CFeatureSearchQuery::m_FeatTypesSet

protected

Definition at line 118 of file feature_search_tool.hpp.

Referenced by CFeatureSearchQuery::GetFeatTypes().

m_FeatureTypes

list<string> CFeatureSearchForm::m_FeatureTypes

protected

Definition at line 179 of file feature_search_tool.hpp.

Referenced by CFeatureSearchForm::x_LoadSettings().

m_FileFormat

int CGffLoadParams::m_FileFormat

private

Definition at line 101 of file gff_load_params.hpp.

Referenced by CGffLoadParams::Copy(), CGffLoadParams::GetFileFormat(), CGffLoadParams::Init(), CGffLoadParams::LoadSettings(), CGffLoadParams::operator==(), CGffLoadParams::SaveSettings(), and CGffLoadParams::SetFileFormat().

m_FileList

CSequenceSearchForm::TFileList CSequenceSearchForm::m_FileList

static

CSequenceSearchForm.

Definition at line 147 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchForm::GetWidget(), CSequenceSearchJob::x_DoSearch(), and CSequenceSearchForm::x_UpdateFileList().

m_FileNames [1/20]

vector<wxString> CGBFlatFileLoadManager::m_FileNames

protected

Definition at line 148 of file gb_flatfile_load_manager.hpp.

Referenced by CGBFlatFileLoadManager::GetExecuteUnit(), CGBFlatFileLoadManager::GetFilenames(), and CGBFlatFileLoadManager::SetFilenames().

m_FileNames [2/20]

vector<wxString> C5ColObjectLoader::m_FileNames

private

Definition at line 77 of file 5col_object_loader.hpp.

Referenced by C5ColObjectLoader::Execute().

m_FileNames [3/20]

vector<wxString> CAgpObjectLoader::m_FileNames

private

Definition at line 80 of file agp_object_loader.hpp.

Referenced by CAgpObjectLoader::Execute().

m_FileNames [4/20]

vector<wxString> CBedObjectLoader::m_FileNames

private

Definition at line 79 of file bed_object_loader.hpp.

Referenced by CBedObjectLoader::Execute().

m_FileNames [5/20]

vector<wxString> CGBFlatFileObjectLoader::m_FileNames

private

Definition at line 82 of file gb_flatfile_object_loader.hpp.

Referenced by CGBFlatFileObjectLoader::Execute().

m_FileNames [6/20]

vector<wxString> CGffObjectLoader::m_FileNames

private

Definition at line 81 of file gff_object_loader.hpp.

Referenced by CGffObjectLoader::Execute().

m_FileNames [7/20]

vector<wxString> CPhyObjectLoader::m_FileNames

private

Definition at line 75 of file phy_object_loader.hpp.

Referenced by CPhyObjectLoader::Execute().

m_FileNames [8/20]

vector<wxString> CPslObjectLoader::m_FileNames

private

Definition at line 80 of file psl_object_loader.hpp.

Referenced by CPslObjectLoader::Execute().

m_FileNames [9/20]

vector<wxString> CVcfObjectLoader::m_FileNames

private

Definition at line 79 of file vcf_object_loader.hpp.

Referenced by CVcfObjectLoader::Execute().

m_FileNames [10/20]

vector<wxString> CWigObjectLoader::m_FileNames

private

Definition at line 80 of file wig_object_loader.hpp.

Referenced by CWigObjectLoader::Execute().

m_FileNames [11/20]

vector<wxString> CPhyLoader::m_FileNames

protected

Definition at line 137 of file phy_loader.hpp.

Referenced by CPhyLoader::GetExecuteUnit(), CPhyLoader::GetFilenames(), and CPhyLoader::SetFilenames().

m_FileNames [12/20]

vector<wxString> CRMLoader::m_FileNames

protected

Definition at line 115 of file rm_load_manager.hpp.

Referenced by CRMLoader::GetExecuteUnit(), CRMLoader::GetFilenames(), and CRMLoader::SetFilenames().

m_FileNames [13/20]

vector<wxString> C5ColLoadManager::m_FileNames

protected

Definition at line 124 of file 5col_load_manager.hpp.

Referenced by C5ColLoadManager::GetExecuteUnit(), C5ColLoadManager::GetFilenames(), and C5ColLoadManager::SetFilenames().

m_FileNames [14/20]

vector<wxString> CAgpLoader::m_FileNames

protected

Definition at line 154 of file agp_loader.hpp.

Referenced by CAgpLoader::GetExecuteUnit(), CAgpLoader::GetFilenames(), and CAgpLoader::SetFilenames().

m_FileNames [15/20]

vector<wxString> CBedLoadManager::m_FileNames

protected

Definition at line 154 of file bed_load_manager.hpp.

Referenced by CBedLoadManager::GetExecuteUnit(), CBedLoadManager::GetFilenames(), and CBedLoadManager::SetFilenames().

m_FileNames [16/20]

vector<wxString> CColumnarVCFLoaderManager::m_FileNames

protected

Definition at line 149 of file columnar_vcf_load_manager.hpp.

Referenced by CColumnarVCFLoaderManager::GetCurrentPanel(), CColumnarVCFLoaderManager::GetFilenames(), CColumnarVCFLoaderManager::GetTask(), and CColumnarVCFLoaderManager::SetFilenames().

m_FileNames [17/20]

vector<wxString> CFASTAFormatLoadManager::m_FileNames

protected

Definition at line 153 of file fasta_format_load_manager.hpp.

Referenced by CFASTAFormatLoadManager::GetExecuteUnit(), CFASTAFormatLoadManager::GetFilenames(), and CFASTAFormatLoadManager::SetFilenames().

m_FileNames [18/20]

vector<wxString> CGffLoadManager::m_FileNames

protected

Definition at line 153 of file gff_load_manager.hpp.

Referenced by CGffLoadManager::GetExecuteUnit(), CGffLoadManager::GetFilenames(), and CGffLoadManager::SetFilenames().

m_FileNames [19/20]

vector<wxString> CVCFLoaderManager::m_FileNames

protected

Definition at line 152 of file vcf_load_manager.hpp.

Referenced by CVCFLoaderManager::GetExecuteUnit(), CVCFLoaderManager::GetFilenames(), and CVCFLoaderManager::SetFilenames().

m_FileNames [20/20]

vector<wxString> CWigLoadManager::m_FileNames

protected

Definition at line 154 of file wig_load_manager.hpp.

Referenced by CWigLoadManager::GetExecuteUnit(), CWigLoadManager::GetFilenames(), and CWigLoadManager::SetFilenames().

m_ForceLocalIDs

bool CFastaLoadParams::m_ForceLocalIDs

private

Definition at line 108 of file fasta_load_params.hpp.

Referenced by CFastaLoadParams::Copy(), CFastaLoadParams::GetForceLocalIDs(), CFastaLoadParams::Init(), CFastaLoadParams::LoadSettings(), CFastaLoadParams::operator==(), CFastaLoadParams::SaveSettings(), and CFastaLoadParams::SetForceLocalIDs().

m_FTblWidget

CFeatTableWidget* CFeatTableView::m_FTblWidget

private

Definition at line 154 of file view_feattable.hpp.

Referenced by CFeatTableView::CreateViewWindow(), CFeatTableView::DestroyViewWindow(), CFeatTableView::GetSelection(), CFeatTableView::LoadSettings(), CFeatTableView::SaveSettings(), CFeatTableView::x_SetVisibleRange(), CFeatTableView::x_Update(), and CFeatTableView::x_UpdateStatusMessage().

m_Gencode [1/2]

string COrfSearchQuery::m_Gencode

protected

Definition at line 111 of file orf_search_tool.hpp.

Referenced by COrfSearchQuery::GetGencode(), and COrfSearchQuery::ToString().

m_Gencode [2/2]

string COrfSearchForm::m_Gencode

protected

Definition at line 167 of file orf_search_tool.hpp.

Referenced by COrfSearchForm::GetWidget(), and COrfSearchForm::x_LoadSettings().

m_GencodeCombo

wxChoice* COrfSearchForm::m_GencodeCombo

protected

Definition at line 162 of file orf_search_tool.hpp.

Referenced by COrfSearchForm::ConstructQuery(), COrfSearchForm::GetWidget(), and COrfSearchForm::x_SaveSettings().

m_GenCollAssm

CRef<objects::CGC_Assembly> CColumnarVCFLoaderManager::m_GenCollAssm

protected

Definition at line 152 of file columnar_vcf_load_manager.hpp.

Referenced by CColumnarVCFLoaderManager::DoTransition(), CColumnarVCFLoaderManager::GetCurrentPanel(), CColumnarVCFLoaderManager::GetTask(), and CColumnarVCFLoaderManager::x_GetRefSeqs().

m_GenomicAccession

bool CGenBankLoadOptionPanel::Token::m_GenomicAccession

Definition at line 168 of file gb_load_option_panel.hpp.

m_GenomicAccessions

vector<string> CGenBankLoadOptionPanel::m_GenomicAccessions

private

Definition at line 180 of file gb_load_option_panel.hpp.

Referenced by CGenBankLoadOptionPanel::GetGenomicAccessions(), and CGenBankLoadOptionPanel::x_ProccessText().

m_GraphicPanel

CGraphicPanel* CViewGraphic::m_GraphicPanel

private

Definition at line 155 of file view_graphic.hpp.

Referenced by CViewGraphic::CreateViewWindow(), CViewGraphic::DestroyViewWindow(), CViewGraphic::GetAnnotNames(), CViewGraphic::GetSearchLoc(), CViewGraphic::GetSelection(), CViewGraphic::GetVisibleRanges(), CViewGraphic::GetWindow(), CViewGraphic::InitView(), CViewGraphic::OnProjectChanged(), CViewGraphic::OnVisibleRangeChanged(), CViewGraphic::OnWidgetDataChanged(), CViewGraphic::SaveSettingsAtProject(), CViewGraphic::SetOrigObject(), CViewGraphic::x_OnSetSelection(), CViewGraphic::x_SetNonAsnInput(), and CViewGraphic::x_UpdateVisRangeLayout().

m_Grid

wxGrid* CResolveIdDlg::m_Grid

Definition at line 128 of file resolve_id_dlg.hpp.

Referenced by CResolveIdDlg::CreateControls(), CResolveIdDlg::Init(), CResolveIdDlg::SetData(), CResolveIdDlg::x_LoadSettings(), and CResolveIdDlg::x_SaveSettings().

m_HyperLink

wxHyperlinkCtrl* CFeatureSearchForm::m_HyperLink

protected

Definition at line 168 of file feature_search_tool.hpp.

Referenced by CFeatureSearchForm::GetWidget(), and CFeatureSearchForm::Update().

m_Ids [1/4]

TIdsVec CGenBankLoadOptionPanel::m_Ids

private

Definition at line 178 of file gb_load_option_panel.hpp.

Referenced by CGenBankLoadOptionPanel::GetSeqIds(), CGenBankLoadOptionPanel::SaveMruAccessions(), and CGenBankLoadOptionPanel::x_ProccessText().

m_Ids [2/4]

vector<CRef<CObject> > CGBObjectLoader::m_Ids

private

Definition at line 74 of file gb_object_loader.hpp.

Referenced by CGBObjectLoader::Execute(), and CGBObjectLoader::GetDescription().

m_Ids [3/4]

string CComponentSearchQuery::m_Ids

protected

Definition at line 97 of file component_search_tool.hpp.

Referenced by CComponentSearchQuery::GetIds().

m_Ids [4/4]

string CVcfSearchQuery::m_Ids

protected

Definition at line 99 of file vcf_search_tool.hpp.

Referenced by CVcfSearchQuery::GetIds().

m_IgnoreGaps

bool CFastaLoadParams::m_IgnoreGaps

private

Definition at line 109 of file fasta_load_params.hpp.

Referenced by CFastaLoadParams::Copy(), CFastaLoadParams::GetIgnoreGaps(), CFastaLoadParams::Init(), CFastaLoadParams::LoadSettings(), CFastaLoadParams::operator==(), CFastaLoadParams::SaveSettings(), and CFastaLoadParams::SetIgnoreGaps().

m_InputObjects

TConstScopedObjects* CCleanupPanel::m_InputObjects

Definition at line 140 of file cleanup_panel.hpp.

Referenced by CCleanupPanel::SetObjects(), and CCleanupPanel::TransferDataToWindow().

m_Kozak

COrfSearchForm::TKozakList COrfSearchForm::m_Kozak

static

Definition at line 150 of file orf_search_tool.hpp.

Referenced by COrfSearchTool::x_CreateJob(), and COrfSearchForm::x_UpdateKozak().

m_KozakList

COrfSearchForm::TKozakList COrfSearchJob::m_KozakList

protected

Definition at line 219 of file orf_search_tool.hpp.

Referenced by COrfSearchJob::x_DoSearch().

m_Loaders

vector<CIRef<IObjectLoader> > CChainLoader::m_Loaders

private

Definition at line 75 of file chain_loader.hpp.

Referenced by CChainLoader::Add(), CChainLoader::GetDescription(), and CChainLoader::GetObjects().

m_LowercaseOption

int CFastaLoadParams::m_LowercaseOption

private

Definition at line 110 of file fasta_load_params.hpp.

Referenced by CFastaLoadParams::Copy(), CFastaLoadParams::GetLowercaseOption(), CFastaLoadParams::Init(), CFastaLoadParams::LoadSettings(), CFastaLoadParams::operator==(), CFastaLoadParams::SaveSettings(), and CFastaLoadParams::SetLowercaseOption().

m_MakeDelta

bool CFastaLoadParams::m_MakeDelta

private

Definition at line 111 of file fasta_load_params.hpp.

Referenced by CFastaLoadParams::Copy(), CFastaLoadParams::GetMakeDelta(), CFastaLoadParams::Init(), CFastaLoadParams::LoadSettings(), CFastaLoadParams::operator==(), CFastaLoadParams::SaveSettings(), and CFastaLoadParams::SetMakeDelta().

m_Manager [1/7]

CGBFlatFileLoadManager& CGBFlatFileLoadManager::CPage::m_Manager

Definition at line 133 of file gb_flatfile_load_manager.hpp.

Referenced by CGBFlatFileLoadManager::CPage::GetPanel().

m_Manager [2/7]

CAgpLoader& CAgpLoader::CPage::m_Manager

Definition at line 139 of file agp_loader.hpp.

Referenced by CAgpLoader::CPage::GetPanel().

m_Manager [3/7]

CBedLoadManager& CBedLoadManager::CPage::m_Manager

Definition at line 139 of file bed_load_manager.hpp.

Referenced by CBedLoadManager::CPage::GetPanel().

m_Manager [4/7]

CFASTAFormatLoadManager& CFASTAFormatLoadManager::CPage::m_Manager

Definition at line 138 of file fasta_format_load_manager.hpp.

Referenced by CFASTAFormatLoadManager::CPage::GetPanel().

m_Manager [5/7]

CGffLoadManager& CGffLoadManager::CPage::m_Manager

Definition at line 142 of file gff_load_manager.hpp.

Referenced by CGffLoadManager::CPage::GetPanel().

m_Manager [6/7]

CVCFLoaderManager& CVCFLoaderManager::CPage::m_Manager

Definition at line 137 of file vcf_load_manager.hpp.

Referenced by CVCFLoaderManager::CPage::GetPanel().

m_Manager [7/7]

CWigLoadManager& CWigLoadManager::CPage::m_Manager

Definition at line 139 of file wig_load_manager.hpp.

Referenced by CWigLoadManager::CPage::GetPanel().

m_MapAssembly

CMapAssemblyParams CGffLoadParams::m_MapAssembly

private

Definition at line 102 of file gff_load_params.hpp.

Referenced by CGffLoadParams::Copy(), CGffLoadParams::GetMapAssembly(), CGffLoadParams::LoadSettings(), CGffLoadParams::operator==(), CGffLoadParams::SaveSettings(), and CGffLoadParams::SetMapAssembly().

m_MappedSeqIds

map<string, set<string> > CColumnarVCFLoaderManager::m_MappedSeqIds

protected

Definition at line 154 of file columnar_vcf_load_manager.hpp.

Referenced by CColumnarVCFLoaderManager::x_GetRefSeqs().

m_MinGC [1/2]

string CCpgSearchQuery::m_MinGC

protected

Definition at line 116 of file cpg_search_tool.hpp.

Referenced by CCpgSearchQuery::GetMinGC(), and CCpgSearchQuery::ToString().

m_MinGC [2/2]

string CCpgSearchForm::m_MinGC

protected

Definition at line 164 of file cpg_search_tool.hpp.

Referenced by CCpgSearchForm::GetWidget(), and CCpgSearchForm::x_LoadSettings().

m_MinGCCtl

wxTextCtrl* CCpgSearchForm::m_MinGCCtl

protected

Definition at line 156 of file cpg_search_tool.hpp.

Referenced by CCpgSearchForm::ConstructQuery(), CCpgSearchForm::GetWidget(), and CCpgSearchForm::x_SaveSettings().

m_MinLenOfIsland [1/2]

string CCpgSearchQuery::m_MinLenOfIsland

protected

Definition at line 115 of file cpg_search_tool.hpp.

Referenced by CCpgSearchQuery::GetMinLenOfIsland(), and CCpgSearchQuery::ToString().

m_MinLenOfIsland [2/2]

string CCpgSearchForm::m_MinLenOfIsland

protected

Definition at line 163 of file cpg_search_tool.hpp.

Referenced by CCpgSearchForm::GetWidget(), and CCpgSearchForm::x_LoadSettings().

m_MinLenOfIslandCtl

wxTextCtrl* CCpgSearchForm::m_MinLenOfIslandCtl

protected

Definition at line 155 of file cpg_search_tool.hpp.

Referenced by CCpgSearchForm::ConstructQuery(), CCpgSearchForm::GetWidget(), and CCpgSearchForm::x_SaveSettings().

m_MinPairs [1/2]

string COrfSearchQuery::m_MinPairs

protected

Definition at line 113 of file orf_search_tool.hpp.

Referenced by COrfSearchQuery::GetMinPairs(), and COrfSearchQuery::ToString().

m_MinPairs [2/2]

string COrfSearchForm::m_MinPairs

protected

Definition at line 169 of file orf_search_tool.hpp.

Referenced by COrfSearchForm::GetWidget(), and COrfSearchForm::x_LoadSettings().

m_MinPercentage [1/2]

string CCpgSearchQuery::m_MinPercentage

protected

Definition at line 117 of file cpg_search_tool.hpp.

Referenced by CCpgSearchQuery::GetMinPercentage(), and CCpgSearchQuery::ToString().

m_MinPercentage [2/2]

string CCpgSearchForm::m_MinPercentage

protected

Definition at line 165 of file cpg_search_tool.hpp.

Referenced by CCpgSearchForm::GetWidget(), and CCpgSearchForm::x_LoadSettings().

m_MinPercentageCtl

wxTextCtrl* CCpgSearchForm::m_MinPercentageCtl

protected

Definition at line 157 of file cpg_search_tool.hpp.

Referenced by CCpgSearchForm::ConstructQuery(), CCpgSearchForm::GetWidget(), and CCpgSearchForm::x_SaveSettings().

m_MRUWindow

CwxHtmlWindow* CGenBankLoadOptionPanel::m_MRUWindow

Definition at line 133 of file gb_load_option_panel.hpp.

Referenced by CGenBankLoadOptionPanel::CreateControls(), CGenBankLoadOptionPanel::Init(), and CGenBankLoadOptionPanel::x_FillMRUList().

m_Name

string COrfSearchForm::SKozakPattern::m_Name

Definition at line 129 of file orf_search_tool.hpp.

m_NameFeatSet

wxString CGffLoadParams::m_NameFeatSet

private

Definition at line 103 of file gff_load_params.hpp.

Referenced by CGffLoadParams::Copy(), CGffLoadParams::GetNameFeatSet(), CGffLoadParams::LoadSettings(), CGffLoadParams::operator==(), CGffLoadParams::SaveSettings(), and CGffLoadParams::SetNameFeatSet().

m_NAs [1/2]

vector<string> CGenBankLoadOptionPanel::m_NAs

private

Definition at line 179 of file gb_load_option_panel.hpp.

Referenced by CGenBankLoadOptionPanel::GetNAs(), CGenBankLoadOptionPanel::SaveMruAccessions(), and CGenBankLoadOptionPanel::x_ProccessText().

m_NAs [2/2]

vector<string> CGBObjectLoader::m_NAs

private

Definition at line 75 of file gb_object_loader.hpp.

Referenced by CGBObjectLoader::Execute(), and CGBObjectLoader::GetDescription().

m_NonAsnTrackData

CIRef<INonAsnTrackData> CViewGraphic::m_NonAsnTrackData

private

Definition at line 156 of file view_graphic.hpp.

Referenced by CViewGraphic::GetNonAsnData(), and CViewGraphic::x_SetNonAsnInput().

m_NoSplit

bool CFastaLoadParams::m_NoSplit

private

Definition at line 112 of file fasta_load_params.hpp.

Referenced by CFastaLoadParams::Copy(), CFastaLoadParams::GetNoSplit(), CFastaLoadParams::Init(), CFastaLoadParams::LoadSettings(), CFastaLoadParams::operator==(), CFastaLoadParams::SaveSettings(), and CFastaLoadParams::SetNoSplit().

m_ObjectIndex

CObjectIndex CFeatTableView::m_ObjectIndex

private

Definition at line 150 of file view_feattable.hpp.

Referenced by CFeatTableView::x_RebuildObjectIndex().

m_ObjectList

CObjectListWidget* CCleanupPanel::m_ObjectList

Definition at line 129 of file cleanup_panel.hpp.

Referenced by CCleanupPanel::CreateControls(), CCleanupPanel::Init(), CCleanupPanel::LoadSettings(), CCleanupPanel::SaveSettings(), CCleanupPanel::TransferDataFromWindow(), and CCleanupPanel::TransferDataToWindow().

m_Objects [1/17]

TConstScopedObjects CCleanupParams::m_Objects

private

Definition at line 96 of file cleanup_params.hpp.

Referenced by CCleanupParams::Copy(), CCleanupParams::GetObjects(), and CCleanupParams::SetObjects().

m_Objects [2/17]

TConstScopedObjects CCleanupTool::m_Objects

protected

Definition at line 86 of file cleanup_tool.hpp.

Referenced by CCleanupTool::x_CreateParamsPanelIfNeeded(), and CCleanupTool::x_SelectCompatibleInputObjects().

m_Objects [3/17]

map<string, TConstScopedObjects> CMergeTool::m_Objects

protected

Definition at line 84 of file merge_tool.hpp.

Referenced by CMergeTool::x_CreateParamsPanelIfNeeded(), and CMergeTool::x_SelectCompatibleInputObjects().

m_Objects [4/17]

TConstScopedObjects CSrcEditParams::m_Objects

Definition at line 92 of file srcedit_params.hpp.

Referenced by CSrcEditParams::Copy(), CSrcEditParams::GetObjects(), CSrcEditParams::SetObjects(), and CSrcEditJob::x_CreateProjectItems().

m_Objects [5/17]

TConstScopedObjects CSrcEditTool::m_Objects

protected

Definition at line 86 of file srcedit_tool.hpp.

Referenced by CSrcEditTool::x_CreateParamsPanelIfNeeded(), and CSrcEditTool::x_SelectCompatibleInputObjects().

m_Objects [6/17]

TObjects C5ColObjectLoader::m_Objects

private

Definition at line 78 of file 5col_object_loader.hpp.

Referenced by C5ColObjectLoader::Execute(), and C5ColObjectLoader::GetObjects().

m_Objects [7/17]

TObjects CAgpObjectLoader::m_Objects

private

Definition at line 81 of file agp_object_loader.hpp.

Referenced by CAgpObjectLoader::Execute(), and CAgpObjectLoader::GetObjects().

m_Objects [8/17]

TObjects CAssemblyObjectLoader::m_Objects

private

Definition at line 84 of file assembly_object_loader.hpp.

Referenced by CAssemblyObjectLoader::Execute(), and CAssemblyObjectLoader::GetObjects().

m_Objects [9/17]

TObjects CBedObjectLoader::m_Objects

private

Definition at line 80 of file bed_object_loader.hpp.

Referenced by CBedObjectLoader::Execute(), CBedObjectLoader::GetObjects(), and CBedObjectLoader::PostExecute().

m_Objects [10/17]

TObjects CChainLoader::m_Objects

private

Definition at line 77 of file chain_loader.hpp.

Referenced by CChainLoader::GetObjects().

m_Objects [11/17]

TObjects CGBFlatFileObjectLoader::m_Objects

private

Definition at line 83 of file gb_flatfile_object_loader.hpp.

Referenced by CGBFlatFileObjectLoader::Execute(), and CGBFlatFileObjectLoader::GetObjects().

m_Objects [12/17]

TObjects CGBObjectLoader::m_Objects

private

Definition at line 76 of file gb_object_loader.hpp.

Referenced by CGBObjectLoader::Execute(), and CGBObjectLoader::GetObjects().

m_Objects [13/17]

TObjects CGffObjectLoader::m_Objects

private

Definition at line 82 of file gff_object_loader.hpp.

Referenced by CGffObjectLoader::Execute(), CGffObjectLoader::GetObjects(), and CGffObjectLoader::PostExecute().

m_Objects [14/17]

TObjects CPhyObjectLoader::m_Objects

private

Definition at line 76 of file phy_object_loader.hpp.

Referenced by CPhyObjectLoader::Execute(), and CPhyObjectLoader::GetObjects().

m_Objects [15/17]

TObjects CPslObjectLoader::m_Objects

private

Definition at line 81 of file psl_object_loader.hpp.

Referenced by CPslObjectLoader::Execute(), CPslObjectLoader::GetObjects(), and CPslObjectLoader::PostExecute().

m_Objects [16/17]

TObjects CVcfObjectLoader::m_Objects

private

Definition at line 80 of file vcf_object_loader.hpp.

Referenced by CVcfObjectLoader::Execute(), CVcfObjectLoader::GetObjects(), and CVcfObjectLoader::PostExecute().

m_Objects [17/17]

TObjects CWigObjectLoader::m_Objects

private

Definition at line 81 of file wig_object_loader.hpp.

Referenced by CWigObjectLoader::Execute(), CWigObjectLoader::GetObjects(), and CWigObjectLoader::PostExecute().

m_ObjMgr

CRef<objects::CObjectManager> CGenBankUIDataSource::m_ObjMgr

protected

Definition at line 116 of file gb_ui_data_source.hpp.

Referenced by CGenBankUIDataSource::Close(), and CGenBankUIDataSource::Open().

m_Open

bool CGenBankUIDataSource::m_Open

protected

Definition at line 122 of file gb_ui_data_source.hpp.

Referenced by CGenBankUIDataSource::Close(), CGenBankUIDataSource::IsOpen(), and CGenBankUIDataSource::Open().

m_OptionPanel

CGenBankLoadOptionPanel* CGenBankUILoadManager::m_OptionPanel

protected

Definition at line 208 of file gb_ui_data_source.hpp.

Referenced by CGenBankUILoadManager::CleanUI(), CGenBankUILoadManager::DoTransition(), CGenBankUILoadManager::GetCurrentPanel(), CGenBankUILoadManager::GetTask(), CGenBankUILoadManager::LoadSettings(), CGenBankUILoadManager::SaveMruAccessions(), and CGenBankUILoadManager::SaveSettings().

m_OptionsPage [1/7]

CPage CGBFlatFileLoadManager::m_OptionsPage

protected

Definition at line 149 of file gb_flatfile_load_manager.hpp.

Referenced by CGBFlatFileLoadManager::GetOptionsPage(), and CGBFlatFileLoadManager::SetPrevPage().

m_OptionsPage [2/7]

CPage CAgpLoader::m_OptionsPage

protected

Definition at line 156 of file agp_loader.hpp.

Referenced by CAgpLoader::GetOptionsPage(), and CAgpLoader::SetPrevPage().

m_OptionsPage [3/7]

CPage CBedLoadManager::m_OptionsPage

protected

Definition at line 156 of file bed_load_manager.hpp.

Referenced by CBedLoadManager::GetOptionsPage(), and CBedLoadManager::SetPrevPage().

m_OptionsPage [4/7]

CPage CFASTAFormatLoadManager::m_OptionsPage

protected

Definition at line 155 of file fasta_format_load_manager.hpp.

Referenced by CFASTAFormatLoadManager::GetOptionsPage(), and CFASTAFormatLoadManager::SetPrevPage().

m_OptionsPage [5/7]

CPage CGffLoadManager::m_OptionsPage

protected

Definition at line 157 of file gff_load_manager.hpp.

Referenced by CGffLoadManager::GetOptionsPage(), and CGffLoadManager::SetPrevPage().

m_OptionsPage [6/7]

CPage CVCFLoaderManager::m_OptionsPage

protected

Definition at line 154 of file vcf_load_manager.hpp.

Referenced by CVCFLoaderManager::GetOptionsPage(), and CVCFLoaderManager::SetPrevPage().

m_OptionsPage [7/7]

CPage CWigLoadManager::m_OptionsPage

protected

Definition at line 156 of file wig_load_manager.hpp.

Referenced by CWigLoadManager::GetOptionsPage(), and CWigLoadManager::SetPrevPage().

m_OrigObj

CConstRef<CObject> CSeqTextView::m_OrigObj

private

Definition at line 96 of file seq_text_view.hpp.

Referenced by CSeqTextView::InitView(), and CSeqTextView::x_GetOrigObject().

m_OrigObject

CConstRef<CSerialObject> CFeatTableView::m_OrigObject

private

original data object passed to the view

Definition at line 145 of file view_feattable.hpp.

Referenced by CFeatTableView::x_GetOrigObject(), CFeatTableView::x_PostAttachToProject(), and CFeatTableView::x_PreAttachToProject().

m_Panel [1/4]

CCleanupPanel* CCleanupTool::m_Panel

protected

Definition at line 88 of file cleanup_tool.hpp.

Referenced by CCleanupTool::CleanUI(), CCleanupTool::InitUI(), CCleanupTool::x_CreateLoadingJob(), CCleanupTool::x_CreateParamsPanelIfNeeded(), and CCleanupTool::x_GetParamsPanel().

m_Panel [2/4]

CMergePanel* CMergeTool::m_Panel

protected

Definition at line 86 of file merge_tool.hpp.

Referenced by CMergeTool::CleanUI(), CMergeTool::InitUI(), CMergeTool::x_CreateLoadingJob(), CMergeTool::x_CreateParamsPanelIfNeeded(), and CMergeTool::x_GetParamsPanel().

m_Panel [3/4]

wxPanel* CFeatTableView::m_Panel

private

Definition at line 152 of file view_feattable.hpp.

Referenced by CFeatTableView::CreateViewWindow(), CFeatTableView::DestroyViewWindow(), and CFeatTableView::GetWindow().

m_Panel [4/4]

CSrcEditPanel* CSrcEditTool::m_Panel

protected

Definition at line 88 of file srcedit_tool.hpp.

Referenced by CSrcEditTool::CleanUI(), CSrcEditTool::InitUI(), CSrcEditTool::x_CreateLoadingJob(), CSrcEditTool::x_CreateParamsPanelIfNeeded(), and CSrcEditTool::x_GetParamsPanel().

m_Params [1/19]

CCleanupParams CCleanupTool::m_Params

protected

Definition at line 87 of file cleanup_tool.hpp.

Referenced by CCleanupTool::x_CreateLoadingJob(), CCleanupTool::x_CreateParamsPanelIfNeeded(), and CCleanupTool::x_GetParamsAsRegSetting().

m_Params [2/19]

CGBFlatFileLoadParams CGBFlatFileLoadManager::m_Params

protected

Definition at line 147 of file gb_flatfile_load_manager.hpp.

Referenced by CGBFlatFileLoadManager::DoTransition(), CGBFlatFileLoadManager::GetExecuteUnit(), CGBFlatFileLoadManager::LoadSettings(), CGBFlatFileLoadManager::SaveSettings(), CGBFlatFileLoadManager::SetRegistryPath(), and CGBFlatFileLoadManager::x_GetParamsPanel().

m_Params [3/19]

CMergeParams CMergeTool::m_Params

protected

Definition at line 85 of file merge_tool.hpp.

Referenced by CMergeTool::x_CreateLoadingJob(), and CMergeTool::x_CreateParamsPanelIfNeeded().

m_Params [4/19]

SAutodefParams CAutodefToolManager::m_Params

protected

Definition at line 92 of file autodef_tool_manager.hpp.

Referenced by CAutodefToolManager::x_CreateEditJob(), CAutodefToolManager::x_CreateParamsPanelIfNeeded(), CAutodefToolManager::x_GetParamsAsRegSetting(), CAutodefToolManager::x_SelectCompatibleInputObjects(), and CAutodefToolManager::x_ValidateParams().

m_Params [5/19]

SAutodefParams CAutodefJob::m_Params

protected

Definition at line 108 of file autodef_tool_manager.hpp.

Referenced by CAutodefJob::x_MakeChanges().

m_Params [6/19]

CSrcEditParams CSrcEditTool::m_Params

protected

Definition at line 87 of file srcedit_tool.hpp.

Referenced by CSrcEditTool::x_CreateLoadingJob(), CSrcEditTool::x_CreateParamsPanelIfNeeded(), and CSrcEditTool::x_GetParamsAsRegSetting().

m_Params [7/19]

CAgpLoadParams CAgpObjectLoader::m_Params

private

Definition at line 79 of file agp_object_loader.hpp.

Referenced by CAgpObjectLoader::Execute().

m_Params [8/19]

CBedLoadParams CBedObjectLoader::m_Params

private

Definition at line 78 of file bed_object_loader.hpp.

Referenced by CBedObjectLoader::Execute().

m_Params [9/19]

CGBFlatFileLoadParams CGBFlatFileObjectLoader::m_Params

private

Definition at line 81 of file gb_flatfile_object_loader.hpp.

Referenced by CGBFlatFileObjectLoader::Execute().

m_Params [10/19]

CGffLoadParams CGffObjectLoader::m_Params

private

Definition at line 80 of file gff_object_loader.hpp.

Referenced by CGffObjectLoader::Execute().

m_Params [11/19]

CPslLoadParams CPslObjectLoader::m_Params

private

Definition at line 79 of file psl_object_loader.hpp.

Referenced by CPslObjectLoader::Execute().

m_Params [12/19]

CBedLoadParams CVcfObjectLoader::m_Params

private

Definition at line 78 of file vcf_object_loader.hpp.

Referenced by CVcfObjectLoader::Execute().

m_Params [13/19]

CWigLoadParams CWigObjectLoader::m_Params

private

Definition at line 79 of file wig_object_loader.hpp.

Referenced by CWigObjectLoader::Execute().

m_Params [14/19]

CAgpLoadParams CAgpLoader::m_Params

protected

Definition at line 153 of file agp_loader.hpp.

Referenced by CAgpLoader::DoTransition(), CAgpLoader::GetExecuteUnit(), CAgpLoader::LoadSettings(), CAgpLoader::SaveSettings(), CAgpLoader::SetRegistryPath(), and CAgpLoader::x_GetParamsPanel().

m_Params [15/19]

CBedLoadParams CBedLoadManager::m_Params

protected

Definition at line 153 of file bed_load_manager.hpp.

Referenced by CBedLoadManager::DoTransition(), CBedLoadManager::GetExecuteUnit(), CBedLoadManager::LoadSettings(), CBedLoadManager::SaveSettings(), CBedLoadManager::SetRegistryPath(), and CBedLoadManager::x_GetParamsPanel().

m_Params [16/19]

CFastaLoadParams CFASTAFormatLoadManager::m_Params

protected

Definition at line 152 of file fasta_format_load_manager.hpp.

Referenced by CFASTAFormatLoadManager::DoTransition(), CFASTAFormatLoadManager::GetExecuteUnit(), CFASTAFormatLoadManager::LoadSettings(), CFASTAFormatLoadManager::SaveSettings(), CFASTAFormatLoadManager::SetRegistryPath(), and CFASTAFormatLoadManager::x_GetParamsPanel().

m_Params [17/19]

CGffLoadParams CGffLoadManager::m_Params

protected

Definition at line 152 of file gff_load_manager.hpp.

Referenced by CGffLoadManager::DoTransition(), CGffLoadManager::GetExecuteUnit(), CGffLoadManager::LoadSettings(), CGffLoadManager::SaveSettings(), CGffLoadManager::SetRegistryPath(), and CGffLoadManager::x_GetParamsPanel().

m_Params [18/19]

CBedLoadParams CVCFLoaderManager::m_Params

protected

Definition at line 151 of file vcf_load_manager.hpp.

Referenced by CVCFLoaderManager::DoTransition(), CVCFLoaderManager::GetExecuteUnit(), CVCFLoaderManager::LoadSettings(), CVCFLoaderManager::SaveSettings(), CVCFLoaderManager::SetRegistryPath(), and CVCFLoaderManager::x_GetParamsPanel().

m_Params [19/19]

CWigLoadParams CWigLoadManager::m_Params

protected

Definition at line 153 of file wig_load_manager.hpp.

Referenced by CWigLoadManager::DoTransition(), CWigLoadManager::GetExecuteUnit(), CWigLoadManager::LoadSettings(), CWigLoadManager::SaveSettings(), CWigLoadManager::SetRegistryPath(), and CWigLoadManager::x_GetParamsPanel().

m_ParamsPanel [1/8]

CGBFlatFileParamsPanel* CGBFlatFileLoadManager::m_ParamsPanel { nullptr }

protected

Definition at line 146 of file gb_flatfile_load_manager.hpp.

Referenced by CGBFlatFileLoadManager::CleanUI(), CGBFlatFileLoadManager::DoTransition(), and CGBFlatFileLoadManager::x_GetParamsPanel().

m_ParamsPanel [2/8]

CAutodefParamsPanel* CAutodefToolManager::m_ParamsPanel

protected

Definition at line 93 of file autodef_tool_manager.hpp.

Referenced by CAutodefToolManager::CleanUI(), CAutodefToolManager::InitUI(), CAutodefToolManager::x_CreateParamsPanelIfNeeded(), and CAutodefToolManager::x_GetParamsPanel().

m_ParamsPanel [3/8]

CAgpLoadPage* CAgpLoader::m_ParamsPanel

protected

Definition at line 152 of file agp_loader.hpp.

Referenced by CAgpLoader::CleanUI(), CAgpLoader::DoTransition(), and CAgpLoader::x_GetParamsPanel().

m_ParamsPanel [4/8]

CBedParamsPanel* CBedLoadManager::m_ParamsPanel

protected

Definition at line 152 of file bed_load_manager.hpp.

Referenced by CBedLoadManager::CleanUI(), CBedLoadManager::DoTransition(), and CBedLoadManager::x_GetParamsPanel().

m_ParamsPanel [5/8]

CFASTAFormatParamsPanel* CFASTAFormatLoadManager::m_ParamsPanel

protected

Definition at line 151 of file fasta_format_load_manager.hpp.

Referenced by CFASTAFormatLoadManager::CleanUI(), CFASTAFormatLoadManager::DoTransition(), and CFASTAFormatLoadManager::x_GetParamsPanel().

m_ParamsPanel [6/8]

CGffParamsPanel* CGffLoadManager::m_ParamsPanel

protected

Definition at line 151 of file gff_load_manager.hpp.

Referenced by CGffLoadManager::CleanUI(), CGffLoadManager::DoTransition(), and CGffLoadManager::x_GetParamsPanel().

m_ParamsPanel [7/8]

CBedParamsPanel* CVCFLoaderManager::m_ParamsPanel

protected

Definition at line 150 of file vcf_load_manager.hpp.

Referenced by CVCFLoaderManager::CleanUI(), CVCFLoaderManager::DoTransition(), and CVCFLoaderManager::x_GetParamsPanel().

m_ParamsPanel [8/8]

CWigParamsPanel* CWigLoadManager::m_ParamsPanel

protected

Definition at line 152 of file wig_load_manager.hpp.

Referenced by CWigLoadManager::CleanUI(), CWigLoadManager::DoTransition(), and CWigLoadManager::x_GetParamsPanel().

m_ParentWindow [1/11]

wxWindow* CGBFlatFileLoadManager::m_ParentWindow { nullptr }

protected

Definition at line 141 of file gb_flatfile_load_manager.hpp.

Referenced by CGBFlatFileLoadManager::SetParentWindow(), and CGBFlatFileLoadManager::x_GetParamsPanel().

m_ParentWindow [2/11]

wxWindow* CGenBankUILoadManager::m_ParentWindow

protected

Definition at line 201 of file gb_ui_data_source.hpp.

Referenced by CGenBankUILoadManager::GetCurrentPanel(), and CGenBankUILoadManager::SetParentWindow().

m_ParentWindow [3/11]

wxWindow* CPhyLoader::m_ParentWindow

protected

Definition at line 132 of file phy_loader.hpp.

Referenced by CPhyLoader::SetParentWindow().

m_ParentWindow [4/11]

wxWindow* CRMLoader::m_ParentWindow

protected

Definition at line 113 of file rm_load_manager.hpp.

Referenced by CRMLoader::SetParentWindow().

m_ParentWindow [5/11]

wxWindow* CAgpLoader::m_ParentWindow

protected

Definition at line 147 of file agp_loader.hpp.

Referenced by CAgpLoader::SetParentWindow(), and CAgpLoader::x_GetParamsPanel().

m_ParentWindow [6/11]

wxWindow* CBedLoadManager::m_ParentWindow

protected

Definition at line 147 of file bed_load_manager.hpp.

Referenced by CBedLoadManager::SetParentWindow(), and CBedLoadManager::x_GetParamsPanel().

m_ParentWindow [7/11]

wxWindow* CColumnarVCFLoaderManager::m_ParentWindow { nullptr }

protected

Definition at line 145 of file columnar_vcf_load_manager.hpp.

Referenced by CColumnarVCFLoaderManager::GetCurrentPanel(), and CColumnarVCFLoaderManager::SetParentWindow().

m_ParentWindow [8/11]

wxWindow* CFASTAFormatLoadManager::m_ParentWindow

protected

Definition at line 146 of file fasta_format_load_manager.hpp.

Referenced by CFASTAFormatLoadManager::SetParentWindow(), and CFASTAFormatLoadManager::x_GetParamsPanel().

m_ParentWindow [9/11]

wxWindow* CGffLoadManager::m_ParentWindow

protected

Definition at line 148 of file gff_load_manager.hpp.

Referenced by CGffLoadManager::SetParentWindow(), and CGffLoadManager::x_GetParamsPanel().

m_ParentWindow [10/11]

wxWindow* CVCFLoaderManager::m_ParentWindow

protected

Definition at line 145 of file vcf_load_manager.hpp.

Referenced by CVCFLoaderManager::SetParentWindow(), and CVCFLoaderManager::x_GetParamsPanel().

m_ParentWindow [11/11]

wxWindow* CWigLoadManager::m_ParentWindow

protected

Definition at line 147 of file wig_load_manager.hpp.

Referenced by CWigLoadManager::SetParentWindow(), and CWigLoadManager::x_GetParamsPanel().

m_ParseSeqIds

int CGffLoadParams::m_ParseSeqIds

private

Definition at line 104 of file gff_load_params.hpp.

Referenced by CGffLoadParams::Copy(), CGffLoadParams::GetParseSeqIds(), CGffLoadParams::Init(), CGffLoadParams::LoadSettings(), CGffLoadParams::operator==(), CGffLoadParams::SaveSettings(), and CGffLoadParams::SetParseSeqIds().

m_Pattern [1/4]

CRegexp * CFeatureSearchJob::m_Pattern

protected

search patteern for "Exact Match" and "Wildcard" modes

search pattern for "Exact Match" and "Wildcard" modes

Definition at line 153 of file seqloc_tool_base.hpp.

Referenced by CFeatureSearchJob::x_DoSearch(), and CFeatureSearchJob::x_Match().

m_Pattern [2/4]

string CFeatureSearchQuery::m_Pattern

protected

Definition at line 115 of file feature_search_tool.hpp.

Referenced by CFeatureSearchQuery::GetPattern(), and CFeatureSearchQuery::ToString().

m_Pattern [3/4]

string CSequenceSearchQuery::m_Pattern

protected

Definition at line 113 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchQuery::GetPattern(), and CSequenceSearchQuery::ToString().

m_Pattern [4/4]

CRegexp* CSequenceSearchJob::m_Pattern

protected

search patteern for "Exact Match" and "Wildcard" modes

Definition at line 220 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchJob::x_DoSearch(), and CSequenceSearchJob::x_GetMatches().

m_PatternCombo

wxChoice* CSequenceSearchForm::m_PatternCombo

protected

Definition at line 165 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchForm::ConstructQuery(), and CSequenceSearchForm::GetWidget().

m_PatternFile [1/2]

string CSequenceSearchQuery::m_PatternFile

protected

Definition at line 115 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchQuery::GetPatternFile(), and CSequenceSearchQuery::ToString().

m_PatternFile [2/2]

string CSequenceSearchJob::m_PatternFile

protected

regular expression to apply

Definition at line 221 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchJob::x_DoSearch().

m_PatternType [1/6]

TPatternType CFeatureSearchJob::m_PatternType

protected

Definition at line 151 of file seqloc_tool_base.hpp.

Referenced by CFeatureSearchJob::x_DoSearch(), and CFeatureSearchJob::x_Match().

m_PatternType [2/6]

TPatternType CFeatureSearchQuery::m_PatternType

protected

Definition at line 116 of file feature_search_tool.hpp.

Referenced by CFeatureSearchQuery::GetPatternType().

m_PatternType [3/6]

TPatternType CFeatureSearchForm::m_PatternType

protected

Definition at line 175 of file feature_search_tool.hpp.

Referenced by CFeatureSearchForm::ConstructQuery().

m_PatternType [4/6]

TPatternType CSequenceSearchQuery::m_PatternType

protected

Definition at line 114 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchQuery::GetPatternType(), and CSequenceSearchQuery::ToString().

m_PatternType [5/6]

TPatternType CSequenceSearchForm::m_PatternType

protected

Definition at line 169 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchForm::ConstructQuery().

m_PatternType [6/6]

TPatternType CSequenceSearchJob::m_PatternType

protected

Definition at line 218 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchJob::x_AddToResults(), CSequenceSearchJob::x_DoSearch(), CSequenceSearchJob::x_GetMatches(), and CSequenceSearchJob::x_SetupColumns().

m_Pos

int CGenBankLoadOptionPanel::Token::m_Pos

Definition at line 165 of file gb_load_option_panel.hpp.

m_pPatternSizer

wxFlexGridSizer* CSequenceSearchForm::m_pPatternSizer

protected

Definition at line 173 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchForm::GetWidget(), and CSequenceSearchForm::Update().

m_ProjectParams

SProjectSelectorParams CGenBankUILoadManager::m_ProjectParams

protected

Definition at line 210 of file gb_ui_data_source.hpp.

Referenced by CGenBankUILoadManager::GetCurrentPanel(), CGenBankUILoadManager::GetTask(), CGenBankUILoadManager::LoadSettings(), and CGenBankUILoadManager::SaveSettings().

m_ProjectSelPanel

CProjectSelectorPanel* CGenBankUILoadManager::m_ProjectSelPanel

protected

Definition at line 209 of file gb_ui_data_source.hpp.

Referenced by CGenBankUILoadManager::CleanUI(), CGenBankUILoadManager::DoTransition(), CGenBankUILoadManager::GetCurrentPanel(), and CGenBankUILoadManager::GetTask().

m_pSearchSizer

wxFlexGridSizer* CSequenceSearchForm::m_pSearchSizer

protected

Definition at line 172 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchForm::GetWidget(), and CSequenceSearchForm::Update().

m_Query [1/8]

CRef<CSNPSearchQuery> CSNPSearchJob::m_Query

protected

Definition at line 156 of file snp_search_tool.hpp.

Referenced by CSNPSearchJob::CSNPSearchJob(), CSNPSearchJob::x_DoSearch(), and CSNPSearchJob::x_ValidateParams().

m_Query [2/8]

CRef<CComponentSearchQuery> CComponentSearchJob::m_Query

protected

Definition at line 170 of file component_search_tool.hpp.

Referenced by CComponentSearchJob::CComponentSearchJob(), CComponentSearchJob::x_DoSearch(), and CComponentSearchJob::x_ValidateParams().

m_Query [3/8]

CRef<CCpgSearchQuery> CCpgSearchJob::m_Query

protected

Definition at line 203 of file cpg_search_tool.hpp.

Referenced by CCpgSearchJob::x_DoSearch(), and CCpgSearchJob::x_ValidateParams().

m_Query [4/8]

CRef<CEntrezSearchQuery> CEntrezSearchJob::m_Query

protected

Definition at line 170 of file entrez_search_tool.hpp.

Referenced by CEntrezSearchJob::CEntrezSearchJob(), CEntrezSearchJob::x_DoSearch(), CEntrezSearchJob::x_GetNewOLTModel(), and CEntrezSearchJob::x_ValidateParams().

m_Query [5/8]

CRef<CFeatureSearchQuery> CFeatureSearchJob::m_Query

protected

Definition at line 226 of file feature_search_tool.hpp.

m_Query [6/8]

CRef<COrfSearchQuery> COrfSearchJob::m_Query

protected

Definition at line 217 of file orf_search_tool.hpp.

Referenced by COrfSearchJob::x_DoSearch(), and COrfSearchJob::x_ValidateParams().

m_Query [7/8]

CRef<CSequenceSearchQuery> CSequenceSearchJob::m_Query

protected

Definition at line 217 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchJob::CSequenceSearchJob(), CSequenceSearchJob::x_DoSearch(), and CSequenceSearchJob::x_ValidateParams().

m_Query [8/8]

CRef<CVcfSearchQuery> CVcfSearchJob::m_Query

protected

Definition at line 161 of file vcf_search_tool.hpp.

Referenced by CVcfSearchJob::CVcfSearchJob(), CVcfSearchJob::x_DoSearch(), and CVcfSearchJob::x_ValidateParams().

m_ReadFirst

bool CFastaLoadParams::m_ReadFirst

private

Definition at line 113 of file fasta_load_params.hpp.

Referenced by CFastaLoadParams::Copy(), CFastaLoadParams::GetReadFirst(), CFastaLoadParams::Init(), CFastaLoadParams::LoadSettings(), CFastaLoadParams::operator==(), CFastaLoadParams::SaveSettings(), and CFastaLoadParams::SetReadFirst().

m_RefSeqIds

vector<CConstRef<objects::CSeq_id> > CColumnarVCFLoaderManager::m_RefSeqIds

protected

Definition at line 153 of file columnar_vcf_load_manager.hpp.

Referenced by CColumnarVCFLoaderManager::DoTransition(), CColumnarVCFLoaderManager::GetCurrentPanel(), CColumnarVCFLoaderManager::GetTask(), and CColumnarVCFLoaderManager::x_GetRefSeqs().

m_RefSequencesPanel

CVcfRefSequencesPanel* CColumnarVCFLoaderManager::m_RefSequencesPanel

protected

Definition at line 157 of file columnar_vcf_load_manager.hpp.

Referenced by CColumnarVCFLoaderManager::CleanUI(), CColumnarVCFLoaderManager::GetCurrentPanel(), and CColumnarVCFLoaderManager::GetTask().

m_Regexp

string COrfSearchForm::SKozakPattern::m_Regexp

Definition at line 130 of file orf_search_tool.hpp.

m_RegPath [1/16]

string CCleanupParams::m_RegPath

private

Definition at line 95 of file cleanup_params.hpp.

Referenced by CCleanupParams::LoadSettings(), CCleanupParams::SaveSettings(), and CCleanupParams::SetRegistryPath().

m_RegPath [2/16]

string CGBFlatFileLoadManager::m_RegPath

protected

Definition at line 142 of file gb_flatfile_load_manager.hpp.

Referenced by CGBFlatFileLoadManager::SetRegistryPath().

m_RegPath [3/16]

string CGenBankUILoadManager::m_RegPath

protected

Definition at line 206 of file gb_ui_data_source.hpp.

Referenced by CGenBankUILoadManager::LoadSettings(), CGenBankUILoadManager::SaveMruAccessions(), CGenBankUILoadManager::SaveSettings(), and CGenBankUILoadManager::SetRegistryPath().

m_RegPath [4/16]

string CFeatTableView::m_RegPath

private

Definition at line 157 of file view_feattable.hpp.

Referenced by CFeatTableView::LoadSettings(), CFeatTableView::SaveSettings(), and CFeatTableView::SetRegistryPath().

m_RegPath [5/16]

string CSrcEditParams::m_RegPath

Definition at line 91 of file srcedit_params.hpp.

Referenced by CSrcEditParams::SetRegistryPath().

m_RegPath [6/16]

string CFastaLoadParams::m_RegPath

private

Definition at line 118 of file fasta_load_params.hpp.

Referenced by CFastaLoadParams::LoadSettings(), CFastaLoadParams::SaveSettings(), and CFastaLoadParams::SetRegistryPath().

m_RegPath [7/16]

string CGffLoadParams::m_RegPath

private

Definition at line 108 of file gff_load_params.hpp.

Referenced by CGffLoadParams::LoadSettings(), CGffLoadParams::SaveSettings(), and CGffLoadParams::SetRegistryPath().

m_RegPath [8/16]

string CPhyLoader::m_RegPath

protected

Definition at line 135 of file phy_loader.hpp.

Referenced by CPhyLoader::SetRegistryPath().

m_RegPath [9/16]

string C5ColLoadManager::m_RegPath

protected

Definition at line 123 of file 5col_load_manager.hpp.

Referenced by C5ColLoadManager::SetRegistryPath().

m_RegPath [10/16]

string CAgpLoader::m_RegPath

protected

Definition at line 150 of file agp_loader.hpp.

Referenced by CAgpLoader::SetRegistryPath().

m_RegPath [11/16]

string CBedLoadManager::m_RegPath

protected

Definition at line 150 of file bed_load_manager.hpp.

Referenced by CBedLoadManager::SetRegistryPath().

m_RegPath [12/16]

string CColumnarVCFLoaderManager::m_RegPath

protected

Definition at line 147 of file columnar_vcf_load_manager.hpp.

Referenced by CColumnarVCFLoaderManager::GetCurrentPanel(), CColumnarVCFLoaderManager::LoadSettings(), CColumnarVCFLoaderManager::SaveSettings(), and CColumnarVCFLoaderManager::SetRegistryPath().

m_RegPath [13/16]

string CFASTAFormatLoadManager::m_RegPath

protected

Definition at line 149 of file fasta_format_load_manager.hpp.

Referenced by CFASTAFormatLoadManager::SetRegistryPath().

m_RegPath [14/16]

string CGffLoadManager::m_RegPath

protected

Definition at line 150 of file gff_load_manager.hpp.

Referenced by CGffLoadManager::SetRegistryPath().

m_RegPath [15/16]

string CVCFLoaderManager::m_RegPath

protected

Definition at line 148 of file vcf_load_manager.hpp.

Referenced by CVCFLoaderManager::SetRegistryPath().

m_RegPath [16/16]

string CWigLoadManager::m_RegPath

protected

Definition at line 150 of file wig_load_manager.hpp.

Referenced by CWigLoadManager::SetRegistryPath().

m_SamplesPanel

CVcfSampleSelectionPanel* CColumnarVCFLoaderManager::m_SamplesPanel

protected

Definition at line 159 of file columnar_vcf_load_manager.hpp.

Referenced by CColumnarVCFLoaderManager::CleanUI(), CColumnarVCFLoaderManager::GetCurrentPanel(), and CColumnarVCFLoaderManager::GetTask().

m_Scope [1/2]

CRef<objects::CScope> CFeatTableView::m_Scope

private

Definition at line 146 of file view_feattable.hpp.

Referenced by CFeatTableView::x_PostAttachToProject(), and CFeatTableView::x_PreAttachToProject().

m_Scope [2/2]

CRef<objects::CScope> CGBFlatFileObjectLoader::m_Scope

private

Definition at line 85 of file gb_flatfile_object_loader.hpp.

Referenced by CGBFlatFileObjectLoader::Execute(), and CGBFlatFileObjectLoader::Init().

m_ScopedLocs

TScopedLocs CComponentSearchQuery::m_ScopedLocs

protected

Definition at line 96 of file component_search_tool.hpp.

m_SearchPattern [1/2]

string CFeatureSearchForm::m_SearchPattern

protected

Definition at line 178 of file feature_search_tool.hpp.

Referenced by CFeatureSearchForm::GetWidget(), and CFeatureSearchForm::x_LoadSettings().

m_SearchPattern [2/2]

string CSequenceSearchForm::m_SearchPattern

protected

Definition at line 170 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchForm::GetWidget(), and CSequenceSearchForm::x_LoadSettings().

m_SearchStr [1/2]

string CFeatureSearchJob::m_SearchStr

protected

Definition at line 152 of file seqloc_tool_base.hpp.

Referenced by CFeatureSearchJob::x_DoSearch(), CFeatureSearchJob::x_IsSNP(), CFeatureSearchJob::x_Match(), and CFeatureSearchJob::x_SearchForSNP().

m_SearchStr [2/2]

string CSequenceSearchJob::m_SearchStr

protected

Definition at line 219 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchJob::x_AddToResults(), CSequenceSearchJob::x_DoSearch(), and CSequenceSearchJob::x_GetMatches().

m_SeqEntries

TConstScopedObjects CAutodefToolManager::m_SeqEntries

protected

Definition at line 90 of file autodef_tool_manager.hpp.

Referenced by CAutodefToolManager::x_CreateParamsPanelIfNeeded(), and CAutodefToolManager::x_SelectCompatibleInputObjects().

m_SeqId

CConstRef<objects::CSeq_id> CViewGraphic::m_SeqId

private

Definition at line 154 of file view_graphic.hpp.

Referenced by CViewGraphic::GetSearchLoc(), CViewGraphic::GetSelection(), CViewGraphic::GetVisibleRanges(), CViewGraphic::InitView(), CViewGraphic::OnVisibleRangeChanged(), CViewGraphic::SaveSettingsAtProject(), CViewGraphic::SetOrigObject(), CViewGraphic::x_GetOrigObject(), CViewGraphic::x_OnSetSelection(), CViewGraphic::x_SetNonAsnInput(), and CViewGraphic::x_UpdateVisRangeLayout().

m_SeqLocContexts [1/5]

vector<ISeqLocSearchContext*> CComponentSearchForm::m_SeqLocContexts

protected

Definition at line 141 of file component_search_tool.hpp.

Referenced by CComponentSearchForm::ConstructQuery().

m_SeqLocContexts [2/5]

vector<ISeqLocSearchContext*> CCpgSearchForm::m_SeqLocContexts

protected

Definition at line 160 of file cpg_search_tool.hpp.

Referenced by CCpgSearchForm::ConstructQuery().

m_SeqLocContexts [3/5]

vector<ISeqLocSearchContext*> CFeatureSearchForm::m_SeqLocContexts

protected

Definition at line 170 of file feature_search_tool.hpp.

Referenced by CFeatureSearchForm::ConstructQuery().

m_SeqLocContexts [4/5]

vector<ISeqLocSearchContext*> COrfSearchForm::m_SeqLocContexts

protected

Definition at line 165 of file orf_search_tool.hpp.

Referenced by COrfSearchForm::ConstructQuery().

m_SeqLocContexts [5/5]

vector<ISeqLocSearchContext*> CSequenceSearchForm::m_SeqLocContexts

protected

Definition at line 166 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchForm::ConstructQuery().

m_SeqType

int CFastaLoadParams::m_SeqType

private

Definition at line 114 of file fasta_load_params.hpp.

Referenced by CFastaLoadParams::Copy(), CFastaLoadParams::GetSeqType(), CFastaLoadParams::Init(), CFastaLoadParams::LoadSettings(), CFastaLoadParams::operator==(), CFastaLoadParams::SaveSettings(), and CFastaLoadParams::SetSeqType().

m_Size

int CGenBankLoadOptionPanel::Token::m_Size

Definition at line 166 of file gb_load_option_panel.hpp.

m_SizeOfSlidingWindow [1/2]

string CCpgSearchQuery::m_SizeOfSlidingWindow

protected

Definition at line 114 of file cpg_search_tool.hpp.

Referenced by CCpgSearchQuery::GetSizeOfSlidingWindow(), and CCpgSearchQuery::ToString().

m_SizeOfSlidingWindow [2/2]

string CCpgSearchForm::m_SizeOfSlidingWindow

protected

Definition at line 162 of file cpg_search_tool.hpp.

Referenced by CCpgSearchForm::GetWidget(), and CCpgSearchForm::x_LoadSettings().

m_SizeOfSlidingWindowCtl

wxTextCtrl* CCpgSearchForm::m_SizeOfSlidingWindowCtl

protected

Definition at line 154 of file cpg_search_tool.hpp.

Referenced by CCpgSearchForm::ConstructQuery(), CCpgSearchForm::GetWidget(), and CCpgSearchForm::x_SaveSettings().

m_SkipInvalid

bool CFastaLoadParams::m_SkipInvalid

private

Definition at line 115 of file fasta_load_params.hpp.

Referenced by CFastaLoadParams::Copy(), CFastaLoadParams::GetSkipInvalid(), CFastaLoadParams::Init(), CFastaLoadParams::LoadSettings(), CFastaLoadParams::operator==(), CFastaLoadParams::SaveSettings(), and CFastaLoadParams::SetSkipInvalid().

m_SrvLocator [1/13]

IServiceLocator* CGBFlatFileLoadManager::m_SrvLocator { nullptr }

protected

Definition at line 140 of file gb_flatfile_load_manager.hpp.

Referenced by CGBFlatFileLoadManager::SetServiceLocator().

m_SrvLocator [2/13]

IServiceLocator* CGenBankUIDataSource::m_SrvLocator

protected

Definition at line 120 of file gb_ui_data_source.hpp.

Referenced by CGenBankUIDataSource::CreateEvtHandler(), CGenBankUIDataSource::GetMenu(), and CGenBankUIDataSource::SetServiceLocator().

m_SrvLocator [3/13]

IServiceLocator* CGenBankUILoadManager::m_SrvLocator

protected

Definition at line 200 of file gb_ui_data_source.hpp.

Referenced by CGenBankUILoadManager::GetCurrentPanel(), CGenBankUILoadManager::GetTask(), and CGenBankUILoadManager::SetServiceLocator().

m_SrvLocator [4/13]

IServiceLocator* CPhyLoader::m_SrvLocator

protected

Definition at line 131 of file phy_loader.hpp.

Referenced by CPhyLoader::SetServiceLocator().

m_SrvLocator [5/13]

IServiceLocator* CRMLoader::m_SrvLocator

protected

Definition at line 112 of file rm_load_manager.hpp.

Referenced by CRMLoader::SetServiceLocator().

m_SrvLocator [6/13]

IServiceLocator* C5ColLoadManager::m_SrvLocator

protected

Definition at line 122 of file 5col_load_manager.hpp.

Referenced by C5ColLoadManager::SetServiceLocator().

m_SrvLocator [7/13]

IServiceLocator* CAgpLoader::m_SrvLocator

protected

Definition at line 146 of file agp_loader.hpp.

Referenced by CAgpLoader::SetServiceLocator().

m_SrvLocator [8/13]

IServiceLocator* CBedLoadManager::m_SrvLocator

protected

Definition at line 146 of file bed_load_manager.hpp.

Referenced by CBedLoadManager::SetServiceLocator().

m_SrvLocator [9/13]

IServiceLocator* CColumnarVCFLoaderManager::m_SrvLocator { nullptr }

protected

Definition at line 144 of file columnar_vcf_load_manager.hpp.

Referenced by CColumnarVCFLoaderManager::GetTask(), and CColumnarVCFLoaderManager::SetServiceLocator().

m_SrvLocator [10/13]

IServiceLocator* CFASTAFormatLoadManager::m_SrvLocator

protected

Definition at line 145 of file fasta_format_load_manager.hpp.

Referenced by CFASTAFormatLoadManager::SetServiceLocator().

m_SrvLocator [11/13]

IServiceLocator* CGffLoadManager::m_SrvLocator

protected

Definition at line 147 of file gff_load_manager.hpp.

Referenced by CGffLoadManager::SetServiceLocator().

m_SrvLocator [12/13]

IServiceLocator* CVCFLoaderManager::m_SrvLocator

protected

Definition at line 144 of file vcf_load_manager.hpp.

Referenced by CVCFLoaderManager::SetServiceLocator().

m_SrvLocator [13/13]

IServiceLocator* CWigLoadManager::m_SrvLocator

protected

Definition at line 146 of file wig_load_manager.hpp.

Referenced by CWigLoadManager::SetServiceLocator().

m_StartOrf [1/2]

string COrfSearchQuery::m_StartOrf

protected

Definition at line 112 of file orf_search_tool.hpp.

Referenced by COrfSearchQuery::GetStartOrf(), and COrfSearchQuery::ToString().

m_StartOrf [2/2]

string COrfSearchForm::m_StartOrf

protected

Definition at line 168 of file orf_search_tool.hpp.

Referenced by COrfSearchForm::GetWidget(), and COrfSearchForm::x_LoadSettings().

m_StartorfCombo

wxChoice* COrfSearchForm::m_StartorfCombo

protected

Definition at line 163 of file orf_search_tool.hpp.

Referenced by COrfSearchForm::ConstructQuery(), COrfSearchForm::GetWidget(), and COrfSearchForm::x_SaveSettings().

m_State [1/9]

EState CGBFlatFileLoadManager::m_State { CGBFlatFileLoadManager::eInvalid }

protected

Definition at line 144 of file gb_flatfile_load_manager.hpp.

Referenced by CGBFlatFileLoadManager::CanDo(), CGBFlatFileLoadManager::CleanUI(), CGBFlatFileLoadManager::DoTransition(), CGBFlatFileLoadManager::GetCurrentPanel(), CGBFlatFileLoadManager::InitUI(), CGBFlatFileLoadManager::IsCompletedState(), CGBFlatFileLoadManager::IsFinalState(), and CGBFlatFileLoadManager::IsInitialState().

m_State [2/9]

EState CGenBankUILoadManager::m_State

protected

Definition at line 204 of file gb_ui_data_source.hpp.

Referenced by CGenBankUILoadManager::CanDo(), CGenBankUILoadManager::CleanUI(), CGenBankUILoadManager::DoTransition(), CGenBankUILoadManager::GetCurrentPanel(), CGenBankUILoadManager::InitUI(), CGenBankUILoadManager::IsCompletedState(), and CGenBankUILoadManager::IsFinalState().

m_State [3/9]

EState CAgpLoader::m_State

protected

Definition at line 148 of file agp_loader.hpp.

Referenced by CAgpLoader::CanDo(), CAgpLoader::CleanUI(), CAgpLoader::DoTransition(), CAgpLoader::GetCurrentPanel(), CAgpLoader::InitUI(), CAgpLoader::IsCompletedState(), CAgpLoader::IsFinalState(), and CAgpLoader::IsInitialState().

m_State [4/9]

EState CBedLoadManager::m_State

protected

Definition at line 148 of file bed_load_manager.hpp.

Referenced by CBedLoadManager::CanDo(), CBedLoadManager::CleanUI(), CBedLoadManager::DoTransition(), CBedLoadManager::GetCurrentPanel(), CBedLoadManager::InitUI(), CBedLoadManager::IsCompletedState(), CBedLoadManager::IsFinalState(), and CBedLoadManager::IsInitialState().

m_State [5/9]

EState CColumnarVCFLoaderManager::m_State

protected

Definition at line 146 of file columnar_vcf_load_manager.hpp.

Referenced by CColumnarVCFLoaderManager::CanDo(), CColumnarVCFLoaderManager::CleanUI(), CColumnarVCFLoaderManager::DoTransition(), CColumnarVCFLoaderManager::GetCurrentPanel(), CColumnarVCFLoaderManager::InitUI(), CColumnarVCFLoaderManager::IsCompletedState(), CColumnarVCFLoaderManager::IsFinalState(), and CColumnarVCFLoaderManager::IsInitialState().

m_State [6/9]

EState CFASTAFormatLoadManager::m_State

protected

Definition at line 147 of file fasta_format_load_manager.hpp.

Referenced by CFASTAFormatLoadManager::CanDo(), CFASTAFormatLoadManager::CleanUI(), CFASTAFormatLoadManager::DoTransition(), CFASTAFormatLoadManager::GetCurrentPanel(), CFASTAFormatLoadManager::InitUI(), CFASTAFormatLoadManager::IsCompletedState(), CFASTAFormatLoadManager::IsFinalState(), and CFASTAFormatLoadManager::IsInitialState().

m_State [7/9]

EState CGffLoadManager::m_State

protected

Definition at line 149 of file gff_load_manager.hpp.

Referenced by CGffLoadManager::CanDo(), CGffLoadManager::CleanUI(), CGffLoadManager::DoTransition(), CGffLoadManager::GetCurrentPanel(), CGffLoadManager::InitUI(), CGffLoadManager::IsCompletedState(), CGffLoadManager::IsFinalState(), and CGffLoadManager::IsInitialState().

m_State [8/9]

EState CVCFLoaderManager::m_State

protected

Definition at line 146 of file vcf_load_manager.hpp.

Referenced by CVCFLoaderManager::CanDo(), CVCFLoaderManager::CleanUI(), CVCFLoaderManager::DoTransition(), CVCFLoaderManager::GetCurrentPanel(), CVCFLoaderManager::InitUI(), CVCFLoaderManager::IsCompletedState(), CVCFLoaderManager::IsFinalState(), and CVCFLoaderManager::IsInitialState().

m_State [9/9]

EState CWigLoadManager::m_State

protected

Definition at line 148 of file wig_load_manager.hpp.

Referenced by CWigLoadManager::CanDo(), CWigLoadManager::CleanUI(), CWigLoadManager::DoTransition(), CWigLoadManager::GetCurrentPanel(), CWigLoadManager::InitUI(), CWigLoadManager::IsCompletedState(), CWigLoadManager::IsFinalState(), and CWigLoadManager::IsInitialState().

m_StatusBar

wxStatusBar* CFeatTableView::m_StatusBar

private

Definition at line 153 of file view_feattable.hpp.

Referenced by CFeatTableView::CreateViewWindow(), CFeatTableView::DestroyViewWindow(), CFeatTableView::x_Update(), and CFeatTableView::x_UpdateStatusMessage().

m_Terms [1/2]

string CSNPSearchQuery::m_Terms

protected

Definition at line 97 of file snp_search_tool.hpp.

Referenced by CSNPSearchQuery::GetTerms(), and CSNPSearchQuery::ToString().

m_Terms [2/2]

string CEntrezSearchQuery::m_Terms

protected

Definition at line 102 of file entrez_search_tool.hpp.

Referenced by CEntrezSearchQuery::GetTerms(), and CEntrezSearchQuery::ToString().

m_TokensNum

int CGenBankLoadOptionPanel::m_TokensNum

private

Definition at line 175 of file gb_load_option_panel.hpp.

Referenced by CGenBankLoadOptionPanel::Init(), CGenBankLoadOptionPanel::IsInputValid(), and CGenBankLoadOptionPanel::x_ValidateInput().

m_Tool [1/8]

CRef<CSNPSearchTool> CSNPSearchForm::m_Tool

protected

Definition at line 129 of file snp_search_tool.hpp.

Referenced by CSNPSearchForm::x_GetTool().

m_Tool [2/8]

CRef<CComponentSearchTool> CComponentSearchForm::m_Tool

protected

Definition at line 138 of file component_search_tool.hpp.

Referenced by CComponentSearchForm::x_GetTool().

m_Tool [3/8]

CRef<CCpgSearchTool> CCpgSearchForm::m_Tool

protected

Definition at line 151 of file cpg_search_tool.hpp.

Referenced by CCpgSearchForm::x_GetTool().

m_Tool [4/8]

CRef<CEntrezSearchTool> CEntrezSearchForm::m_Tool

protected

Definition at line 138 of file entrez_search_tool.hpp.

Referenced by CEntrezSearchForm::x_GetTool().

m_Tool [5/8]

CRef<CFeatureSearchTool> CFeatureSearchForm::m_Tool

protected

Definition at line 164 of file feature_search_tool.hpp.

Referenced by CFeatureSearchForm::x_GetTool().

m_Tool [6/8]

CRef<COrfSearchTool> COrfSearchForm::m_Tool

protected

Definition at line 159 of file orf_search_tool.hpp.

Referenced by COrfSearchForm::x_GetTool(), COrfSearchForm::x_LoadSettings(), and COrfSearchForm::x_SaveSettings().

m_Tool [7/8]

CRef<CSequenceSearchTool> CSequenceSearchForm::m_Tool

protected

Definition at line 162 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchForm::x_GetTool().

m_Tool [8/8]

CRef<CVcfSearchTool> CVcfSearchForm::m_Tool

protected

Definition at line 138 of file vcf_search_tool.hpp.

Referenced by CVcfSearchForm::x_GetTool().

m_TopLevelSeqCount

size_t CColumnarVCFLoaderManager::m_TopLevelSeqCount = 0

protected

Definition at line 155 of file columnar_vcf_load_manager.hpp.

Referenced by CColumnarVCFLoaderManager::DoTransition(), CColumnarVCFLoaderManager::GetCurrentPanel(), and CColumnarVCFLoaderManager::x_GetRefSeqs().

m_Type

CRef<CGenBankUIDataSourceType> CGenBankUIDataSource::m_Type

mutableprotected

Definition at line 115 of file gb_ui_data_source.hpp.

Referenced by CGenBankUIDataSource::GetType().

m_TypeCombo [1/2]

wxChoice* CFeatureSearchForm::m_TypeCombo

protected

Definition at line 167 of file feature_search_tool.hpp.

Referenced by CFeatureSearchForm::ConstructQuery(), CFeatureSearchForm::GetWidget(), and CFeatureSearchForm::x_SaveSettings().

m_TypeCombo [2/2]

wxChoice* CSequenceSearchForm::m_TypeCombo

protected

Definition at line 164 of file sequence_search_tool.hpp.

Referenced by CSequenceSearchForm::ConstructQuery(), CSequenceSearchForm::GetWidget(), CSequenceSearchForm::Update(), and CSequenceSearchForm::x_SaveSettings().

m_UsingStatusBar

bool CTextView::m_UsingStatusBar

private

Definition at line 138 of file text_view.hpp.

Referenced by CTextView::OnTextGotFocus(), CTextView::OnTextLostFocus(), and CTextView::~CTextView().

m_Valid

bool CGenBankLoadOptionPanel::Token::m_Valid

Definition at line 167 of file gb_load_option_panel.hpp.

m_ValidTokens

vector<string> CGenBankLoadOptionPanel::m_ValidTokens

private

Definition at line 182 of file gb_load_option_panel.hpp.

Referenced by CGenBankLoadOptionPanel::SaveMruAccessions(), and CGenBankLoadOptionPanel::x_ValidateInput().

m_VcfContexts

vector<ISeqLocSearchContext*> CVcfSearchQuery::m_VcfContexts

protected

Definition at line 98 of file vcf_search_tool.hpp.

Referenced by CVcfSearchQuery::GetVcfContexts().

m_VCFreader

CColumnarVCFReader CColumnarVCFLoaderManager::m_VCFreader

protected

Definition at line 162 of file columnar_vcf_load_manager.hpp.

Referenced by CColumnarVCFLoaderManager::DoTransition(), and CColumnarVCFLoaderManager::GetCurrentPanel().

m_Window [1/3]

wxWindow* CSeqTextView::m_Window

private

Definition at line 94 of file seq_text_view.hpp.

Referenced by CSeqTextView::CreateViewWindow(), CSeqTextView::DestroyViewWindow(), CSeqTextView::GetCommandHandler(), CSeqTextView::GetMainObject(), CSeqTextView::GetSelection(), CSeqTextView::GetWindow(), CSeqTextView::InitView(), and CSeqTextView::x_OnSetSelection().

m_Window [2/3]

CSeqDesktopPanel* CSequinDesktopView::m_Window

private

Definition at line 124 of file sequin_desktop_view.hpp.

Referenced by CSequinDesktopView::CreateViewWindow(), CSequinDesktopView::DestroyViewWindow(), CSequinDesktopView::GetCommandHandler(), CSequinDesktopView::GetMainObject(), CSequinDesktopView::GetSelection(), CSequinDesktopView::GetWindow(), CSequinDesktopView::InitView(), CSequinDesktopView::OnProjectChanged(), CSequinDesktopView::x_GetOrigObject(), CSequinDesktopView::x_OnRefreshData(), and CSequinDesktopView::x_OnSetSelection().

m_Window [3/3]

CTextPanel* CTextView::m_Window

private

Definition at line 136 of file text_view.hpp.

Referenced by CTextView::CreateViewWindow(), CTextView::DestroyViewWindow(), CTextView::GetActiveObjects(), CTextView::GetCommandHandler(), CTextView::GetMainObject(), CTextView::GetMenu(), CTextView::GetSelection(), CTextView::GetWindow(), CTextView::InitView(), CTextView::OnProjectChanged(), CTextView::SetPosition(), CTextView::x_GetOrigObject(), and CTextView::x_OnSetSelection().

Friends

CCleanupPanel

friend class CCleanupPanel

friend

Definition at line 53 of file cleanup_params.hpp.

CFASTAFormatParamsPanel

friend class CFASTAFormatParamsPanel

friend

Definition at line 51 of file fasta_load_params.hpp.

CFeatTableViewFactory

friend class CFeatTableViewFactory

friend

Definition at line 66 of file view_feattable.hpp.

CGffParamsPanel

friend class CGffParamsPanel

friend

Definition at line 56 of file gff_load_params.hpp.

CSeqTextViewFactory

friend class CSeqTextViewFactory

friend

Definition at line 54 of file seq_text_view.hpp.

CSequinDesktopViewFactory

friend class CSequinDesktopViewFactory

friend

Definition at line 60 of file sequin_desktop_view.hpp.

CSrcEditPanel

friend class CSrcEditPanel

friend

Definition at line 53 of file srcedit_params.hpp.

CTextViewFactory

friend class CTextViewFactory

friend

Definition at line 62 of file text_view.hpp.

CViewGraphicFactory

friend class CViewGraphicFactory

friend

Definition at line 65 of file view_graphic.hpp.