GUI_PKG_SEQUENCE

Collaboration diagram for GUI_PKG_SEQUENCE:

Modules
	overridables
	overridables

Classes
class	CCleanupPanel
class	CCleanupParams
class	CCleanupTool
	CCleanupTool. More...
class	CGBFlatFileLoadManager
	CGBFlatFileLoadManager. More...
class	CGBFlatFileLoadManager::CPage
class	CGenBankUIDataSource
	CGenBankUIDataSource. More...
class	CGenBankUIDataSourceType
	CGenBankUIDataSourceType. More...
class	CGenBankUILoadManager
	CGenBankUILoadManager. More...
class	CMergeTool
	CCleanupTool. More...
class	CSeqTextView
	CSeqTextView. More...
class	CSeqTextViewFactory
	CSeqTextViewFactory. More...
class	CSNPSearchTool
	CSNPSearchTool. More...
class	CSNPSearchQuery
	CSNPSearchTool. More...
class	CSNPSearchForm
	CSNPSearchForm. More...
class	CSNPSearchJob
	CSNPSearchJob. More...
class	CFeatTableView
	CFeatTableView. More...
class	CFeatTableViewFactory
	CFeatTableViewFactory. More...
class	CViewGraphic
	CViewGraphic. More...
class	CViewGraphicFactory
	CViewGraphicFactory. More...
class	CAutodefToolManager
	CAutodefToolManager. More...
class	CAutodefJob
	CAutodefJob. More...
class	CSequinDesktopView
	CSequinDesktopView. More...
class	CSequinDesktopViewFactory
	CSequinDesktopViewFactory. More...
class	CSrcEditParams
class	CSrcEditTool
	CSrcEditTool. More...
class	C5ColObjectLoader
	C5ColObjectLoader. More...
class	CAgpObjectLoader
	C5ColObjectLoader. More...
class	CAssemblyObjectLoader
	CAssemblyObjectLoader. More...
class	CBedObjectLoader
	CBedObjectLoader. More...
class	CChainLoader
	CChainLoader. More...
class	CFASTAFormatParamsPanel
	CFASTAFormatParamsPanel. More...
class	CFastaLoadParams
class	CGBFlatFileObjectLoader
	CGBFlatFileObjectLoader. More...
class	CGenBankLoadOptionPanel
	CGenBankLoadOptionPanel. More...
class	CGenBankLoadOptionPanel::CAccDescriptor
struct	CGenBankLoadOptionPanel::Token
class	CGBObjectLoader
	CGBObjectLoader. More...
class	CGffLoadParams
class	CGffObjectLoader
	CGffObjectLoader. More...
class	CGffParamsPanel
class	CPhyObjectLoader
class	CPslObjectLoader
	CPslObjectLoader. More...
class	CVcfObjectLoader
	CVcfObjectLoader. More...
class	CWigObjectLoader
	CWigObjectLoader. More...
class	CPhyLoader
	CPhyLoader. More...
class	CRMLoader
	CRMLoader. More...
class	C5ColLoadManager
	C5ColLoadManager. More...
class	CAgpLoader
	CAgpLoader. More...
class	CAgpLoader::CPage
class	CBedLoadManager
	CBedLoadManager. More...
class	CBedLoadManager::CPage
class	CColumnarVCFLoaderManager
	CColumnarVCFLoaderManager. More...
class	CComponentSearchTool
	CComponentSearchTool. More...
class	CComponentSearchQuery
	CComponentSearchTool. More...
class	CComponentSearchForm
class	CComponentSearchJob
	CComponentSearchJob. More...
class	CCpgSearchTool
	CCpgSearchTool. More...
class	CCpgSearchQuery
	CCpgSearchTool. More...
class	CCpgSearchForm
class	CCpgSearchJob
	CCpgSearchJob. More...
class	CEntrezSearchTool
	CEntrezSearchTool. More...
class	CEntrezSearchQuery
	CEntrezSearchTool. More...
class	CEntrezSearchForm
	CTestSearchForm. More...
class	CEntrezSearchJob
	CEntrezSearchJob. More...
class	CFASTAFormatLoadManager
	CFASTAFormatLoadManager. More...
class	CFASTAFormatLoadManager::CPage
class	CFeatureSearchTool
	CFeatureSearchTool. More...
class	CFeatureSearchQuery
	CFeatureSearchTool. More...
class	CFeatureSearchForm
class	CFeatureSearchJob
	CFeatureSearchJob. More...
class	CGffLoadManager
	CGffLoadManager. More...
class	CGffLoadManager::CPage
class	COrfSearchTool
	COrfSearchTool. More...
class	COrfSearchQuery
	COrfSearchTool. More...
class	COrfSearchForm
struct	COrfSearchForm::SKozakPattern
class	COrfSearchJob
	COrfSearchJob. More...
class	CSequenceSearchTool
	CSequenceSearchTool. More...
class	CSequenceSearchQuery
	CSequenceSearchTool. More...
class	CSequenceSearchForm
class	CSequenceSearchJob
	CSequenceSearchJob. More...
class	CTextView
	CTextView. More...
class	CTextViewFactory
	CTextViewFactory. More...
class	CVCFLoaderManager
	CVCFLoaderManager. More...
class	CVCFLoaderManager::CPage
class	CVcfSearchTool
	CVcfSearchTool. More...
class	CVcfSearchQuery
	CVcfSearchQuery. More...
class	CVcfSearchForm
class	CVcfSearchJob
	CVcfSearchJob. More...
class	CWigLoadManager
	CWigLoadManager. More...
class	CWigLoadManager::CPage
class	CResolveIdDlg

Typedefs
typedef pair< const char *, const char * >	CSNPSearchJob::TPair
typedef CTimeMRUList< CAccDescriptor >	CGenBankLoadOptionPanel::TMRUAccList
typedef vector< CRef< CObject > >	CGenBankLoadOptionPanel::TIdsVec
typedef CComponentSearchQuery::TScopedLocs	CComponentSearchForm::TScopedLocs
typedef CComponentSearchQuery::SScopedLoc	CComponentSearchJob::TScopedLoc
typedef CComponentSearchQuery::TScopedLocs	CComponentSearchJob::TScopedLocs
typedef CCpgSearchQuery::TScopedLocs	CCpgSearchForm::TScopedLocs
typedef CCpgSearchQuery::SScopedLoc	CCpgSearchJob::TScopedLoc
typedef CCpgSearchQuery::TScopedLocs	CCpgSearchJob::TScopedLocs
typedef CRangeCollection< TSeqPos >	CCpgSearchJob::TRangeCollection
typedef pair< const char *, const char * >	CEntrezSearchJob::TPair
typedef CFeatureSearchTool::EPatternType	CFeatureSearchQuery::TPatternType
typedef objects::CFeatListItem	CFeatureSearchQuery::TFeatTypeItem
typedef set< TFeatTypeItem >	CFeatureSearchQuery::TFeatTypeItemSet
typedef CFeatureSearchQuery::TScopedLocs	CFeatureSearchForm::TScopedLocs
typedef CFeatureSearchQuery::TFeatTypeItem	CFeatureSearchJob::TFeatTypeItem
typedef CFeatureSearchQuery::TFeatTypeItemSet	CFeatureSearchJob::TFeatTypeItemSet
typedef CFeatureSearchQuery::SScopedLoc	CFeatureSearchJob::TScopedLoc
typedef CFeatureSearchQuery::TScopedLocs	CFeatureSearchJob::TScopedLocs
typedef CSearchToolBase::EPatternType	CFeatureSearchJob::TPatternType
typedef COrfSearchQuery::TScopedLocs	COrfSearchForm::TScopedLocs
typedef struct SKozakPattern	COrfSearchForm::TKozakPattern
typedef list< TKozakPattern >	COrfSearchForm::TKozakList
typedef COrfSearchQuery::SScopedLoc	COrfSearchJob::TScopedLoc
typedef COrfSearchQuery::TScopedLocs	COrfSearchJob::TScopedLocs
typedef CRangeCollection< TSeqPos >	COrfSearchJob::TRangeCollection
typedef CSequenceSearchTool::EPatternType	CSequenceSearchQuery::TPatternType
typedef CSequenceSearchQuery::TScopedLocs	CSequenceSearchForm::TScopedLocs
typedef pair< string, string >	CSequenceSearchForm::TDescPattern
typedef list< TDescPattern >	CSequenceSearchForm::TDescPatList
typedef pair< wxString, TDescPatList >	CSequenceSearchForm::TPattern
typedef map< string, TPattern >	CSequenceSearchForm::TFileList
typedef CSearchToolBase::EPatternType	CSequenceSearchForm::TPatternType
typedef CSequenceSearchQuery::SScopedLoc	CSequenceSearchJob::TScopedLoc
typedef CSequenceSearchQuery::TScopedLocs	CSequenceSearchJob::TScopedLocs
typedef set< pair< TSeqPos, TSeqPos > >	CSequenceSearchJob::TRangeCollection
typedef CSearchToolBase::EPatternType	CSequenceSearchJob::TPatternType
typedef vector< objects::CSeq_id_Handle >	CResolveIdDlg::THandles
typedef vector< pair< string, THandles > >	CResolveIdDlg::TData
typedef map< objects::CSeq_id_Handle, objects::CSeq_id_Handle >	CResolveIdDlg::TIdMap

Enumerations
enum	{ CCleanupPanel::ID_CCLEANUPPANEL = 10000 , CCleanupPanel::ID_LISTCTRL1 = 10001 , CCleanupPanel::ID_RADIOBOX1 = 10002 }
	Control identifiers. More...
enum	CGBFlatFileLoadManager::EState { CGBFlatFileLoadManager::eInvalid = -1 , CGBFlatFileLoadManager::eParams , CGBFlatFileLoadManager::eCompleted }
enum	EGenBankCommands { eCmdLoadFromGenBank = 12250 }
	commands introduced by Net BLAST data source More...
enum	CGenBankUILoadManager::EState { CGenBankUILoadManager::eInvalid = -1 , CGenBankUILoadManager::eSelectAcc , CGenBankUILoadManager::eSelectProject , CGenBankUILoadManager::eCompleted }
enum	{   CFASTAFormatParamsPanel::ID_CFASTAFORMATPARAMSPANEL = 10033 , CFASTAFormatParamsPanel::ID_SEQ_TYPE = 10040 , CFASTAFormatParamsPanel::ID_LOWERCASE = 10039 , CFASTAFormatParamsPanel::ID_CHECKBOX1 = 10034 ,   CFASTAFormatParamsPanel::ID_CHECKBOX2 = 10035 , CFASTAFormatParamsPanel::ID_CHECKBOX8 = 10021 , CFASTAFormatParamsPanel::ID_CHECKBOX4 = 10037 , CFASTAFormatParamsPanel::ID_CHECKBOX5 = 10038 ,   CFASTAFormatParamsPanel::ID_CHECKBOX = 10009 }
	Control identifiers. More...
enum	{ CGenBankLoadOptionPanel::ID_CGENBANKLOADOPTIONPANEL = 10013 , CGenBankLoadOptionPanel::ID_ACC_INPUT = 10022 , CGenBankLoadOptionPanel::ID_HTMLWINDOW2 = 10002 }
	Control identifiers. More...
enum	{   CGffParamsPanel::ID_CGFFPARAMSPANEL = 10003 , CGffParamsPanel::ID_CHOICE2 = 10005 , CGffParamsPanel::ID_TEXTCTRL1 = 10012 , CGffParamsPanel::ID_PANEL = 10004 ,   CGffParamsPanel::ID_SEQ_ID_NORMAL = 10025 , CGffParamsPanel::IDSEQ_ID_NUMERIC = 10026 , CGffParamsPanel::ID_SEQ_ID_LOCAL = 10027 , CGffParamsPanel::ID_PANEL7 = 10091 }
	Control identifiers. More...
enum	CAgpLoader::EState { CAgpLoader::eInvalid = -1 , CAgpLoader::eParams , CAgpLoader::eCompleted }
enum	CBedLoadManager::EState { CBedLoadManager::eInvalid = -1 , CBedLoadManager::eParams , CBedLoadManager::eCompleted }
enum	CColumnarVCFLoaderManager::EState {   CColumnarVCFLoaderManager::eInvalid = -1 , CColumnarVCFLoaderManager::eAssembly , CColumnarVCFLoaderManager::eInfoSelection , CColumnarVCFLoaderManager::eSampleSelection ,   CColumnarVCFLoaderManager::eRefSequences , CColumnarVCFLoaderManager::eCompleted }
enum	CFASTAFormatLoadManager::EState { CFASTAFormatLoadManager::eInvalid = -1 , CFASTAFormatLoadManager::eParams , CFASTAFormatLoadManager::eCompleted }
enum	CGffLoadManager::EState { CGffLoadManager::eInvalid = -1 , CGffLoadManager::eParams , CGffLoadManager::eCompleted }
enum	CVCFLoaderManager::EState { CVCFLoaderManager::eInvalid = -1 , CVCFLoaderManager::eParams , CVCFLoaderManager::eCompleted }
enum	CWigLoadManager::EState { CWigLoadManager::eInvalid = -1 , CWigLoadManager::eParams , CWigLoadManager::eCompleted }
enum	{ CResolveIdDlg::ID_CRESOLVEIDDLG = 10014 , CResolveIdDlg::ID_GRID = 10016 }
	Control identifiers. More...

Functions
	CCleanupPanel::CCleanupPanel ()
	Constructors. More...
	CCleanupPanel::CCleanupPanel (wxWindow *parent, wxWindowID id=ID_CCLEANUPPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)
bool	CCleanupPanel::Create (wxWindow *parent, wxWindowID id=ID_CCLEANUPPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)
	Creation. More...
	CCleanupPanel::~CCleanupPanel ()
	Destructor. More...
void	CCleanupPanel::Init ()
	Initialises member variables. More...
void	CCleanupPanel::CreateControls ()
	Creates the controls and sizers. More...
virtual bool	CCleanupPanel::TransferDataToWindow ()
	Transfer data to the window. More...
virtual bool	CCleanupPanel::TransferDataFromWindow ()
	Transfer data from the window. More...
CCleanupParams &	CCleanupPanel::GetData ()
	Data access. More...
const CCleanupParams &	CCleanupPanel::GetData () const
void	CCleanupPanel::SetData (const CCleanupParams &data)
wxBitmap	CCleanupPanel::GetBitmapResource (const wxString &name)
	Retrieves bitmap resources. More...
wxIcon	CCleanupPanel::GetIconResource (const wxString &name)
	Retrieves icon resources. More...
void	CCleanupPanel::SetObjects (TConstScopedObjects *objects)
static bool	CCleanupPanel::ShowToolTips ()
	Should we show tooltips? More...
	CCleanupParams::CCleanupParams ()
	Default constructor for CCleanupParams. More...
	CCleanupParams::CCleanupParams (const CCleanupParams &data)
	Copy constructor for CCleanupParams. More...
	CCleanupParams::~CCleanupParams ()
	Destructor for CCleanupParams. More...
void	CCleanupParams::operator= (const CCleanupParams &data)
	Assignment operator for CCleanupParams. More...
bool	CCleanupParams::operator== (const CCleanupParams &data) const
	Equality operator for CCleanupParams. More...
void	CCleanupParams::Copy (const CCleanupParams &data)
	Copy function for CCleanupParams. More...
void	CCleanupParams::Init ()
	Initialises member variables. More...
virtual void	CCleanupParams::SetRegistryPath (const string &path)
	IRegSettings. More...
virtual void	CCleanupParams::SaveSettings () const
virtual void	CCleanupParams::LoadSettings ()
const TConstScopedObjects &	CCleanupParams::GetObjects () const
TConstScopedObjects &	CCleanupParams::SetObjects ()
int	CCleanupParams::GetCleanupMode () const
void	CCleanupParams::SetCleanupMode (int value)
	CCleanupTool::CCleanupTool ()
	CCleanupTool. More...
virtual void	CCleanupTool::x_SelectCompatibleInputObjects ()
	CGBFlatFileLoadManager::CGBFlatFileLoadManager ()
	CGBFlatFileLoadManager. More...
static string	CGBFlatFileLoadManager::Id ()
static string	CGBFlatFileLoadManager::Label ()
	CGBFlatFileLoadManager::CPage::CPage (CGBFlatFileLoadManager &mgr)
virtual wxPanel *	CGBFlatFileLoadManager::CPage::GetPanel ()
virtual bool	CGBFlatFileLoadManager::CPage::CanLeavePage (bool)
CGBFlatFileParamsPanel *	CGBFlatFileLoadManager::x_GetParamsPanel ()
	CGenBankUIDataSource::CGenBankUIDataSource (CGenBankUIDataSourceType &type)
	CGenBankUIDataSource::~CGenBankUIDataSource ()
	CGenBankUIDataSourceType::CGenBankUIDataSourceType ()
	CGenBankUIDataSourceType. More...
	CGenBankUILoadManager::CGenBankUILoadManager ()
	CGenBankUILoadManager. More...
void	CGenBankUILoadManager::SaveMruAccessions ()
	CMergeTool::CMergeTool ()
	CCleanupTool. More...
virtual void	CMergeTool::x_SelectCompatibleInputObjects ()
	CSeqTextView::CSeqTextView ()
virtual void	CSeqTextView::x_OnSetSelection (CSelectionEvent &evt)
	override in derived classes in order to handle selection broadcast More...
virtual bool	CSeqTextView::x_MergeObjects (TConstScopedObjects &objects)
bool	CSeqTextViewFactory::x_NeedsConversion (const CObject &object, objects::CScope &scope)
	CSNPSearchTool::CSNPSearchTool ()
	IDMSearchTool. More...
virtual CRef< CSearchJobBase >	CSNPSearchTool::x_CreateJob (IDMSearchQuery &query)
	implementing CSearchToolBase pure virtual function More...
	CSNPSearchQuery::CSNPSearchQuery (const string &terms)
	CSNPSearchTool. More...
string	CSNPSearchQuery::GetTerms () const
virtual string	CSNPSearchQuery::ToString () const
	Prepare a string representation of a query (for logging and debugging) More...
	CSNPSearchForm::CSNPSearchForm ()
	CSNPSearchForm::CSNPSearchForm (CSNPSearchTool &tool)
	CSNPSearchForm. More...
	CSNPSearchJob::CSNPSearchJob (CSNPSearchQuery &query)
	CSNPSearchJob. More...
	CFeatTableView::DECLARE_EVENT_MAP ()
	CFeatTableView::CFeatTableView ()
	CFeatTableView. More...
void	CFeatTableView::x_OnFeatTableEvent (CEvent *)
void	CFeatTableView::x_InitMenuResources ()
virtual void	CFeatTableView::x_CreateMenuBarMenu ()
	initializes m_MenuBarMenu; override in derived classes More...
virtual void	CFeatTableView::x_OnSetSelection (CSelectionEvent &evt)
	override in derived classes in order to handle selection broadcast More...
virtual const CObject *	CFeatTableView::x_GetOrigObject () const
virtual void	CFeatTableView::x_Update ()
virtual void	CFeatTableView::x_UpdateStatusMessage ()
virtual void	CFeatTableView::x_RebuildObjectIndex ()
virtual void	CFeatTableView::x_SetVisibleRange (const objects::CSeq_loc &loc)
virtual bool	CFeatTableView::x_MergeObjects (TConstScopedObjects &objects)
bool	CFeatTableViewFactory::x_NeedsConversion (const CObject &object, objects::CScope &scope)
	CViewGraphic::DECLARE_EVENT_MAP ()
	CViewGraphic::CViewGraphic ()
	CViewGraphic::~CViewGraphic ()
void	CViewGraphic::OnWidgetDataChanged (CEvent *evt)
void	CViewGraphic::OnOpenGraphicalView (CEvent *evt)
virtual void	CViewGraphic::SetWorkbench (IWorkbench *workbench)
	IView implementation. More...
virtual CRef< objects::CSeq_loc >	CViewGraphic::GetSearchLoc ()
virtual CRef< objects::CScope >	CViewGraphic::GetSearchScope ()
virtual INonAsnTrackData *	CViewGraphic::GetNonAsnData ()
virtual set< string >	CViewGraphic::GetAnnotNames () const
void	CViewGraphic::x_UpdateVisRangeLayout (const IViewManagerService::TViews &views)
virtual bool	CViewGraphic::x_MergeObjects (TConstScopedObjects &objects)
string	CViewGraphic::x_GetViewSettingsFromParams (const objects::CUser_object *params)
void	CViewGraphic::x_SetNonAsnInput (const objects::CProjectFolder &prj_folder)
bool	CViewGraphicFactory::x_NeedsConversion (const CObject &object, objects::CScope &scope)
	CAutodefToolManager::CAutodefToolManager ()
	CAutodefToolManager. More...
CEditAppJob *	CAutodefToolManager::x_CreateEditJob ()
virtual void	CAutodefToolManager::x_SelectCompatibleInputObjects ()
	select only Seq-entries More...
	CAutodefJob::CAutodefJob (CProjectService *service, const SAutodefParams &params)
	CAutodefJob. More...
virtual void	CAutodefJob::x_MakeChanges ()
	override this function in derived classes, populate m_TextResult More...
	CSequinDesktopView::DECLARE_EVENT_MAP ()
	CSequinDesktopView::CSequinDesktopView ()
	CSequinDesktopView::~CSequinDesktopView ()
virtual void	CSequinDesktopView::x_OnSetSelection (CSelectionEvent &evt)
	override in derived classes in order to handle selection broadcast More...
void	CSequinDesktopView::x_OnRefreshData (CEvent *event)
void	CSequinDesktopView::x_OnSingleMouseClick (CEvent *event)
	Scrolls to the corresponding item in the Flat File View and selects it. More...
	CSrcEditParams::CSrcEditParams ()
	Default constructor for CSrcEditParams. More...
	CSrcEditParams::CSrcEditParams (const CSrcEditParams &data)
	Copy constructor for CSrcEditParams. More...
	CSrcEditParams::~CSrcEditParams ()
	Destructor for CSrcEditParams. More...
void	CSrcEditParams::operator= (const CSrcEditParams &data)
	Assignment operator for CSrcEditParams. More...
bool	CSrcEditParams::operator== (const CSrcEditParams &data) const
	Equality operator for CSrcEditParams. More...
void	CSrcEditParams::Copy (const CSrcEditParams &data)
	Copy function for CSrcEditParams. More...
void	CSrcEditParams::Init ()
	Initialises member variables. More...
virtual void	CSrcEditParams::SetRegistryPath (const string &path)
	IRegSettings. More...
virtual void	CSrcEditParams::SaveSettings () const
virtual void	CSrcEditParams::LoadSettings ()
const TConstScopedObjects &	CSrcEditParams::GetObjects () const
TConstScopedObjects &	CSrcEditParams::SetObjects ()
	CSrcEditTool::CSrcEditTool ()
	CSrcEditTool. More...
virtual void	CSrcEditTool::x_SelectCompatibleInputObjects ()
	C5ColObjectLoader::C5ColObjectLoader (const vector< wxString > &filenames)
	CAgpObjectLoader::CAgpObjectLoader (const CAgpLoadParams &params, const vector< wxString > &filenames)
	CAssemblyObjectLoader::CAssemblyObjectLoader (const vector< string > &accessions)
	CBedObjectLoader::CBedObjectLoader (const CBedLoadParams &params, const vector< wxString > &filenames)
void	CChainLoader::Add (IObjectLoader *loader)
	CFASTAFormatParamsPanel::CFASTAFormatParamsPanel ()
	CFASTAFormatParamsPanel. More...
	CFASTAFormatParamsPanel::CFASTAFormatParamsPanel (wxWindow *parent, wxWindowID id=ID_CFASTAFORMATPARAMSPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)
bool	CFASTAFormatParamsPanel::Create (wxWindow *parent, wxWindowID id=ID_CFASTAFORMATPARAMSPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)
	CFASTAFormatParamsPanel::~CFASTAFormatParamsPanel ()
void	CFASTAFormatParamsPanel::Init ()
void	CFASTAFormatParamsPanel::CreateControls ()
virtual bool	CFASTAFormatParamsPanel::TransferDataToWindow ()
virtual bool	CFASTAFormatParamsPanel::TransferDataFromWindow ()
CFastaLoadParams &	CFASTAFormatParamsPanel::GetData ()
	Data access. More...
const CFastaLoadParams &	CFASTAFormatParamsPanel::GetData () const
void	CFASTAFormatParamsPanel::SetData (const CFastaLoadParams &data)
wxBitmap	CFASTAFormatParamsPanel::GetBitmapResource (const wxString &name)
	Retrieves bitmap resources. More...
wxIcon	CFASTAFormatParamsPanel::GetIconResource (const wxString &name)
	Retrieves icon resources. More...
static bool	CFASTAFormatParamsPanel::ShowToolTips ()
	CFastaLoadParams::CFastaLoadParams ()
	Default constructor for CFastaLoadParams. More...
	CFastaLoadParams::CFastaLoadParams (const CFastaLoadParams &data)
	Copy constructor for CFastaLoadParams. More...
	CFastaLoadParams::~CFastaLoadParams ()
	Destructor for CFastaLoadParams. More...
void	CFastaLoadParams::operator= (const CFastaLoadParams &data)
	Assignment operator for CFastaLoadParams. More...
bool	CFastaLoadParams::operator== (const CFastaLoadParams &data) const
	Equality operator for CFastaLoadParams. More...
void	CFastaLoadParams::Copy (const CFastaLoadParams &data)
	Copy function for CFastaLoadParams. More...
void	CFastaLoadParams::Init ()
	Initialises member variables. More...
virtual void	CFastaLoadParams::SetRegistryPath (const string &path)
	IRegSettings. More...
virtual void	CFastaLoadParams::SaveSettings () const
	IRegSettings. More...
virtual void	CFastaLoadParams::LoadSettings ()
bool	CFastaLoadParams::GetForceLocalIDs () const
void	CFastaLoadParams::SetForceLocalIDs (bool value)
bool	CFastaLoadParams::GetIgnoreGaps () const
void	CFastaLoadParams::SetIgnoreGaps (bool value)
int	CFastaLoadParams::GetLowercaseOption () const
void	CFastaLoadParams::SetLowercaseOption (int value)
bool	CFastaLoadParams::GetMakeDelta () const
void	CFastaLoadParams::SetMakeDelta (bool value)
bool	CFastaLoadParams::GetNoSplit () const
void	CFastaLoadParams::SetNoSplit (bool value)
bool	CFastaLoadParams::GetReadFirst () const
void	CFastaLoadParams::SetReadFirst (bool value)
int	CFastaLoadParams::GetSeqType () const
void	CFastaLoadParams::SetSeqType (int value)
bool	CFastaLoadParams::GetSkipInvalid () const
void	CFastaLoadParams::SetSkipInvalid (bool value)
	CGBFlatFileObjectLoader::CGBFlatFileObjectLoader (const CGBFlatFileLoadParams &params)
	CGBFlatFileObjectLoader::CGBFlatFileObjectLoader (const CGBFlatFileLoadParams &params, const vector< wxString > &filenames)
void	CGBFlatFileObjectLoader::Init ()
	CGenBankLoadOptionPanel::CAccDescriptor::CAccDescriptor (const string &accession)
bool	CGenBankLoadOptionPanel::CAccDescriptor::operator== (const CAccDescriptor &ad) const
string	CGenBankLoadOptionPanel::CAccDescriptor::GetAccession () const
	CGenBankLoadOptionPanel::CGenBankLoadOptionPanel ()
	CGenBankLoadOptionPanel::CGenBankLoadOptionPanel (wxWindow *parent, wxWindowID id=ID_CGENBANKLOADOPTIONPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(266, 184), long style=wxTAB_TRAVERSAL)
bool	CGenBankLoadOptionPanel::Create (wxWindow *parent, wxWindowID id=ID_CGENBANKLOADOPTIONPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(266, 184), long style=wxTAB_TRAVERSAL)
	CGenBankLoadOptionPanel::~CGenBankLoadOptionPanel ()
void	CGenBankLoadOptionPanel::Init ()
void	CGenBankLoadOptionPanel::CreateControls ()
void	CGenBankLoadOptionPanel::OnAccInputUpdated (wxCommandEvent &event)
	wxEVT_COMMAND_TEXT_UPDATED event handler for ID_ACC_INPUT More...
void	CGenBankLoadOptionPanel::OnRecentAccClicked (wxHtmlLinkEvent &event)
	wxEVT_COMMAND_HTML_LINK_CLICKED event handler for ID_HTMLWINDOW2 More...
wxBitmap	CGenBankLoadOptionPanel::GetBitmapResource (const wxString &name)
	Retrieves bitmap resources. More...
wxIcon	CGenBankLoadOptionPanel::GetIconResource (const wxString &name)
	Retrieves icon resources. More...
static bool	CGenBankLoadOptionPanel::ShowToolTips ()
void	CGenBankLoadOptionPanel::SaveSettings (const string &regPath)
void	CGenBankLoadOptionPanel::LoadSettings (const string &regPath)
void	CGenBankLoadOptionPanel::SaveMruAccessions (const string &regPath)
string	CGenBankLoadOptionPanel::GetInput () const
void	CGenBankLoadOptionPanel::SetInput (const string &input)
bool	CGenBankLoadOptionPanel::IsInputValid ()
TIdsVec &	CGenBankLoadOptionPanel::GetSeqIds ()
const vector< string > &	CGenBankLoadOptionPanel::GetNAs () const
const vector< string > &	CGenBankLoadOptionPanel::GetGenomicAccessions () const
void	CGenBankLoadOptionPanel::x_ValidateInput ()
void	CGenBankLoadOptionPanel::x_FillMRUList ()
	CGenBankLoadOptionPanel::Token::Token ()
int	CGenBankLoadOptionPanel::x_ProccessText (const string &text, vector< Token > &tokens, ICanceled &canceled)
	CGBObjectLoader::CGBObjectLoader (const vector< CRef< CObject > > &ids, const vector< string > &NAs)
	CGffLoadParams::CGffLoadParams ()
	Default constructor for CGffLoadParams. More...
	CGffLoadParams::CGffLoadParams (const CGffLoadParams &data)
	Copy constructor for CGffLoadParams. More...
	CGffLoadParams::~CGffLoadParams ()
	Destructor for CGffLoadParams. More...
void	CGffLoadParams::operator= (const CGffLoadParams &data)
	Assignment operator for CGffLoadParams. More...
bool	CGffLoadParams::operator== (const CGffLoadParams &data) const
	Equality operator for CGffLoadParams. More...
void	CGffLoadParams::Copy (const CGffLoadParams &data)
	Copy function for CGffLoadParams. More...
void	CGffLoadParams::Init ()
	Initialises member variables. More...
virtual void	CGffLoadParams::SetRegistryPath (const string &path)
	IRegSettings. More...
virtual void	CGffLoadParams::SaveSettings () const
	IRegSettings. More...
virtual void	CGffLoadParams::LoadSettings ()
int	CGffLoadParams::GetFileFormat () const
void	CGffLoadParams::SetFileFormat (int value)
CMapAssemblyParams	CGffLoadParams::GetMapAssembly () const
void	CGffLoadParams::SetMapAssembly (CMapAssemblyParams value)
wxString	CGffLoadParams::GetNameFeatSet () const
void	CGffLoadParams::SetNameFeatSet (wxString value)
int	CGffLoadParams::GetParseSeqIds () const
void	CGffLoadParams::SetParseSeqIds (int value)
	CGffObjectLoader::CGffObjectLoader (const CGffLoadParams &params, const vector< wxString > &filenames)
	CGffParamsPanel::CGffParamsPanel ()
	Constructors. More...
	CGffParamsPanel::CGffParamsPanel (wxWindow *parent, wxWindowID id=ID_CGFFPARAMSPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 500), long style=wxTAB_TRAVERSAL)
bool	CGffParamsPanel::Create (wxWindow *parent, wxWindowID id=ID_CGFFPARAMSPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 500), long style=wxTAB_TRAVERSAL)
	Creation. More...
	CGffParamsPanel::~CGffParamsPanel ()
	Destructor. More...
void	CGffParamsPanel::Init ()
	Initialises member variables. More...
void	CGffParamsPanel::CreateControls ()
	Creates the controls and sizers. More...
virtual bool	CGffParamsPanel::TransferDataToWindow ()
virtual bool	CGffParamsPanel::TransferDataFromWindow ()
void	CGffParamsPanel::OnParseSeqIdNormalSelected (wxCommandEvent &event)
	wxEVT_COMMAND_RADIOBUTTON_SELECTED event handler for ID_SEQ_ID_NORMAL More...
void	CGffParamsPanel::OnParseSeqIdNumericSelected (wxCommandEvent &event)
	wxEVT_COMMAND_RADIOBUTTON_SELECTED event handler for IDSEQ_ID_NUMERIC More...
void	CGffParamsPanel::OnParseSeqIdLocalSelected (wxCommandEvent &event)
	wxEVT_COMMAND_RADIOBUTTON_SELECTED event handler for ID_SEQ_ID_LOCAL More...
CGffLoadParams &	CGffParamsPanel::GetData ()
	Data access. More...
const CGffLoadParams &	CGffParamsPanel::GetData () const
void	CGffParamsPanel::SetData (const CGffLoadParams &data)
wxBitmap	CGffParamsPanel::GetBitmapResource (const wxString &name)
	Retrieves bitmap resources. More...
wxIcon	CGffParamsPanel::GetIconResource (const wxString &name)
	Retrieves icon resources. More...
static bool	CGffParamsPanel::ShowToolTips ()
	Should we show tooltips? More...
void	CGffParamsPanel::x_SetParseSeqId (int val)
	CPhyObjectLoader::CPhyObjectLoader (const vector< wxString > &filenames)
	CPslObjectLoader::CPslObjectLoader (const CPslLoadParams &params, const vector< wxString > &filenames)
	CVcfObjectLoader::CVcfObjectLoader (const CBedLoadParams &params, const vector< wxString > &filenames)
	CWigObjectLoader::CWigObjectLoader (const CWigLoadParams &params, const vector< wxString > &filenames)
	CPhyLoader::CPhyLoader ()
	CPhyLoader. More...
static string	CPhyLoader::Id ()
static string	CPhyLoader::Label ()
	CRMLoader::CRMLoader ()
	CRMLoader. More...
static string	CRMLoader::Id ()
static string	CRMLoader::Label ()
	C5ColLoadManager::C5ColLoadManager ()
	C5ColLoadManager. More...
static string	C5ColLoadManager::Id ()
static string	C5ColLoadManager::Label ()
	CAgpLoader::CAgpLoader ()
	CAgpLoader. More...
static string	CAgpLoader::Id ()
static string	CAgpLoader::Label ()
	CAgpLoader::CPage::CPage (CAgpLoader &manager)
virtual wxPanel *	CAgpLoader::CPage::GetPanel ()
virtual bool	CAgpLoader::CPage::CanLeavePage (bool)
CAgpLoadPage *	CAgpLoader::x_GetParamsPanel ()
	CBedLoadManager::CBedLoadManager ()
	CBedLoadManager. More...
static string	CBedLoadManager::Id ()
static string	CBedLoadManager::Label ()
	CBedLoadManager::CPage::CPage (CBedLoadManager &manager)
virtual wxPanel *	CBedLoadManager::CPage::GetPanel ()
virtual bool	CBedLoadManager::CPage::CanLeavePage (bool)
CBedParamsPanel *	CBedLoadManager::x_GetParamsPanel ()
	CColumnarVCFLoaderManager::CColumnarVCFLoaderManager ()
	CColumnarVCFLoaderManager. More...
static string	CColumnarVCFLoaderManager::Id ()
static string	CColumnarVCFLoaderManager::Label ()
void	CColumnarVCFLoaderManager::x_GetRefSeqs ()
	CComponentSearchTool::CComponentSearchTool ()
	IDMSearchTool. More...
virtual CRef< CSearchJobBase >	CComponentSearchTool::x_CreateJob (IDMSearchQuery &query)
	implementing CSearchToolBase pure virtual function More...
	CComponentSearchQuery::CComponentSearchQuery (TScopedLocs &locs, const string &ids)
	CComponentSearchQuery. More...
string	CComponentSearchQuery::GetIds () const
virtual string	CComponentSearchQuery::ToString () const
	Prepare a string representation of a query (for logging and debugging) More...
	CComponentSearchForm::CComponentSearchForm (CComponentSearchTool &tool)
	CComponentSearchForm. More...
virtual CIRef< IDMSearchQuery >	CComponentSearchForm::ConstructQuery ()
virtual wxSizer *	CComponentSearchForm::GetWidget (wxWindow *parent)
	return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget) More...
virtual void	CComponentSearchForm::UpdateContexts ()
	updates m_ContextCombo More...
virtual void	CComponentSearchForm::x_LoadSettings (const CRegistryReadView &)
virtual void	CComponentSearchForm::x_SaveSettings (CRegistryWriteView) const
	CComponentSearchJob::CComponentSearchJob (CComponentSearchQuery &query)
	CComponentSearchJob. More...
void	CComponentSearchJob::x_AddToResults (CObject &obj, objects::CScope &scope, const string &loc_name, const string &ctx_name)
	CCpgSearchTool::CCpgSearchTool ()
	CCpgSearchTool. More...
virtual CRef< CSearchJobBase >	CCpgSearchTool::x_CreateJob (IDMSearchQuery &query)
	implementing CSearchToolBase pure virtual function More...
	CCpgSearchQuery::CCpgSearchQuery (TScopedLocs &locs, const string &xSizeOfSlidingWindow, const string &xMinLenOfIsland, const string &xMinGC, const string &xMinPercentage, const string &xAdjMergeThreshold)
	CCpgSearchQuery. More...
string	CCpgSearchQuery::GetSizeOfSlidingWindow ()
string	CCpgSearchQuery::GetMinLenOfIsland ()
string	CCpgSearchQuery::GetMinGC ()
string	CCpgSearchQuery::GetMinPercentage ()
string	CCpgSearchQuery::GetAdjMergeThreshold ()
virtual string	CCpgSearchQuery::ToString () const
	Prepare a string representation of a query (for logging and debugging) More...
	CCpgSearchForm::CCpgSearchForm (CCpgSearchTool &tool)
	CCpgSearchForm. More...
	CCpgSearchForm::~CCpgSearchForm ()
virtual CIRef< IDMSearchQuery >	CCpgSearchForm::ConstructQuery ()
virtual wxSizer *	CCpgSearchForm::GetWidget (wxWindow *parent)
	return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget) More...
virtual void	CCpgSearchForm::UpdateContexts ()
	updates m_ContextCombo More...
virtual void	CCpgSearchForm::x_LoadSettings (const CRegistryReadView &view)
virtual void	CCpgSearchForm::x_SaveSettings (CRegistryWriteView view) const
virtual IDMSearchTool *	CCpgSearchForm::x_GetTool ()
	CCpgSearchJob::CCpgSearchJob (CCpgSearchQuery &query)
	CCpgSearchJob. More...
void	CCpgSearchJob::x_AddToResults (CObject &obj, objects::CScope &scope, const string &loc_name, int start, int stop, int length, int gc, const string &ctx_name)
	CEntrezSearchTool::CEntrezSearchTool ()
	IDMSearchTool. More...
void	CEntrezSearchTool::GetDbNames (vector< string > &name)
virtual CRef< CSearchJobBase >	CEntrezSearchTool::x_CreateJob (IDMSearchQuery &query)
	implementing CSearchToolBase pure virtual function More...
	CEntrezSearchQuery::CEntrezSearchQuery (const string &terms, const string &db_name)
	CEntrezSearchTool. More...
string	CEntrezSearchQuery::GetTerms () const
string	CEntrezSearchQuery::GetDbName () const
virtual string	CEntrezSearchQuery::ToString () const
	Prepare a string representation of a query (for logging and debugging) More...
	CEntrezSearchForm::CEntrezSearchForm ()
	CEntrezSearchForm::CEntrezSearchForm (CEntrezSearchTool &tool)
	CEntrezSearchForm. More...
virtual void	CEntrezSearchForm::SetDictionary (list< string > *)
virtual void	CEntrezSearchForm::SetMainValue (string)
	CEntrezSearchJob::CEntrezSearchJob (CEntrezSearchQuery &query)
	CEntrezSearchJob. More...
void	CEntrezSearchJob::SetReleaseType (xml::node &ds)
	Adds an additional child node, indicating the release type (RefSeq or GenBank) More...
	CFASTAFormatLoadManager::CFASTAFormatLoadManager ()
	CFASTAFormatLoadManager. More...
static string	CFASTAFormatLoadManager::Id ()
static string	CFASTAFormatLoadManager::Label ()
	CFASTAFormatLoadManager::CPage::CPage (CFASTAFormatLoadManager &manager)
virtual wxPanel *	CFASTAFormatLoadManager::CPage::GetPanel ()
virtual bool	CFASTAFormatLoadManager::CPage::CanLeavePage (bool)
CFASTAFormatParamsPanel *	CFASTAFormatLoadManager::x_GetParamsPanel ()
	CFeatureSearchTool::CFeatureSearchTool ()
	CFeatureSearchTool. More...
virtual CRef< CSearchJobBase >	CFeatureSearchTool::x_CreateJob (IDMSearchQuery &query)
	implementing CSearchToolBase pure virtual function More...
	CFeatureSearchQuery::CFeatureSearchQuery (TScopedLocs &locs, const string &pattern, bool case_sensitive, TPatternType pt_type, const TFeatTypeItemSet &feat_types)
	CFeatureSearchQuery. More...
string	CFeatureSearchQuery::GetPattern ()
TPatternType	CFeatureSearchQuery::GetPatternType ()
bool	CFeatureSearchQuery::GetCaseSensitive ()
const TFeatTypeItemSet &	CFeatureSearchQuery::GetFeatTypes ()
virtual string	CFeatureSearchQuery::ToString () const
	Prepare a string representation of a query (for logging and debugging) More...
	CFeatureSearchForm::CFeatureSearchForm (CFeatureSearchTool &tool)
	CFeatureSearchForm::~CFeatureSearchForm ()
virtual CIRef< IDMSearchQuery >	CFeatureSearchForm::ConstructQuery ()
virtual wxSizer *	CFeatureSearchForm::GetWidget (wxWindow *parent)
	return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget) More...
	CFeatureSearchJob::CFeatureSearchJob (CFeatureSearchQuery &query)
	CFeatureSearchJob. More...
string	CFeatureSearchJob::SeqLocToString (const objects::CSeq_loc &loc)
void	CFeatureSearchJob::x_SearchFeatures (TScopedLocs &scoped_locs, const TFeatTypeItemSet &feat_types)
bool	CFeatureSearchJob::x_Match (const string &text) const
bool	CFeatureSearchJob::x_Match (const objects::CGene_ref &gene_ref) const
	genes have a lot of embedded labels. More...
void	CFeatureSearchJob::x_AddFeatToResults (const objects::CSeq_feat &feat, objects::CScope &scope, const string &loc_label, const int cnt, const int cnt_found, const string &ctx_name)
void	CFeatureSearchJob::x_AddToResults (CObject &obj, objects::CScope &scope, const string &loc_name, const string &strand, const string &acc_name, const string &ctx_name)
bool	CFeatureSearchJob::x_IsSNP () const
objects::CSeq_feat_Handle	CFeatureSearchJob::x_SearchForSNP (const objects::CSeq_loc &seq_loc, objects::CScope &scope, const set< string > &annot_names)
	CGffLoadManager::CGffLoadManager ()
	CGffLoadManager. More...
static string	CGffLoadManager::Id ()
static string	CGffLoadManager::Label ()
	CGffLoadManager::CPage::CPage (CGffLoadManager &manager)
virtual wxPanel *	CGffLoadManager::CPage::GetPanel ()
virtual bool	CGffLoadManager::CPage::CanLeavePage (bool)
CGffParamsPanel *	CGffLoadManager::x_GetParamsPanel ()
	COrfSearchTool::COrfSearchTool ()
	COrfSearchTool. More...
virtual CRef< CSearchJobBase >	COrfSearchTool::x_CreateJob (IDMSearchQuery &query)
	implementing CSearchToolBase pure virtual function More...
	COrfSearchQuery::COrfSearchQuery (TScopedLocs &locs, const string &gc, const string &so, const string &mp)
	COrfSearchQuery. More...
string	COrfSearchQuery::GetGencode ()
string	COrfSearchQuery::GetStartOrf ()
string	COrfSearchQuery::GetMinPairs ()
virtual string	COrfSearchQuery::ToString () const
	Prepare a string representation of a query (for logging and debugging) More...
	COrfSearchForm::SKozakPattern::SKozakPattern (const string &name, const string &regexp, int codon_pos)
	COrfSearchForm::COrfSearchForm (COrfSearchTool &tool)
	COrfSearchForm. More...
	COrfSearchForm::~COrfSearchForm ()
virtual CIRef< IDMSearchQuery >	COrfSearchForm::ConstructQuery ()
virtual wxSizer *	COrfSearchForm::GetWidget (wxWindow *parent)
	return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget) More...
virtual void	COrfSearchForm::x_LoadSettings (const CRegistryReadView &view)
virtual void	COrfSearchForm::x_SaveSettings (CRegistryWriteView view) const
virtual IDMSearchTool *	COrfSearchForm::x_GetTool ()
void	COrfSearchForm::x_UpdateKozak ()
	COrfSearchJob::COrfSearchJob (COrfSearchQuery &query, const COrfSearchForm::TKozakList &kozakList)
	COrfSearchJob. More...
int	COrfSearchJob::x_DecodeGeneticCode (const string &s)
void	COrfSearchJob::x_AddToResults (CObject &obj, objects::CScope &scope, int start, int stop, const string &strand, int length, int p_length, const string &start_cdn, const string &stop_cdn, const string &translated_seq, const string &nucleotide_seq, const string &start_context, const string &ctx_name, const string &kozak, int k_loc, int color)
	CSequenceSearchTool::CSequenceSearchTool ()
	CSequenceSearchTool. More...
virtual CRef< CSearchJobBase >	CSequenceSearchTool::x_CreateJob (IDMSearchQuery &query)
	implementing CSearchToolBase pure virtual function More...
	CSequenceSearchQuery::CSequenceSearchQuery (TScopedLocs &locs, const string &pattern, TPatternType pt_type, const string &file)
	CSequenceSearchQuery. More...
string	CSequenceSearchQuery::GetPattern ()
string	CSequenceSearchQuery::GetPatternFile ()
TPatternType	CSequenceSearchQuery::GetPatternType ()
virtual string	CSequenceSearchQuery::ToString () const
	Prepare a string representation of a query (for logging and debugging) More...
	CSequenceSearchForm::CSequenceSearchForm (CSequenceSearchTool &tool)
	CSequenceSearchForm::~CSequenceSearchForm ()
virtual CIRef< IDMSearchQuery >	CSequenceSearchForm::ConstructQuery ()
virtual wxSizer *	CSequenceSearchForm::GetWidget (wxWindow *parent)
	return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget) More...
virtual void	CSequenceSearchForm::x_LoadSettings (const CRegistryReadView &view)
virtual void	CSequenceSearchForm::x_SaveSettings (CRegistryWriteView view) const
virtual IDMSearchTool *	CSequenceSearchForm::x_GetTool ()
virtual void	CSequenceSearchForm::UpdateContexts ()
	updates m_ContextCombo More...
void	CSequenceSearchForm::x_UpdateFileList (void)
	CSequenceSearchJob::CSequenceSearchJob (CSequenceSearchQuery &query)
	CSequenceSearchJob. More...
IAppJob::EJobState	CSequenceSearchJob::x_SearchSequence (TScopedLocs &scoped_locs)
void	CSequenceSearchJob::x_GetMatches (const string &data, int start, TRangeCollection &coll, bool reverse)
	"offset" argument defines the sequence position corresponding to the fisrt character in "data" More...
bool	CSequenceSearchJob::x_Match (const string &text)
void	CSequenceSearchJob::x_GetSequence (objects::CSeqVector &vec, const CRange< TSeqPos > &range, string *s)
void	CSequenceSearchJob::x_AddToResults (CObject &obj, objects::CScope &scope, const string &sequence, const string &loc_name, const string &strand, const string &ctx_name)
	CTextView::CTextView ()
	CTextView::~CTextView ()
virtual void	CTextView::x_OnSetSelection (CSelectionEvent &evt)
	override in derived classes in order to handle selection broadcast More...
	CVCFLoaderManager::CVCFLoaderManager ()
	CVCFLoaderManager. More...
static string	CVCFLoaderManager::Id ()
static string	CVCFLoaderManager::Label ()
	CVCFLoaderManager::CPage::CPage (CVCFLoaderManager &manager)
virtual wxPanel *	CVCFLoaderManager::CPage::GetPanel ()
virtual bool	CVCFLoaderManager::CPage::CanLeavePage (bool)
CBedParamsPanel *	CVCFLoaderManager::x_GetParamsPanel ()
	CVcfSearchTool::CVcfSearchTool ()
	IDMSearchTool. More...
virtual CRef< CSearchJobBase >	CVcfSearchTool::x_CreateJob (IDMSearchQuery &query)
	implementing CSearchToolBase pure virtual function More...
	CVcfSearchQuery::CVcfSearchQuery (vector< ISeqLocSearchContext * > VcfContexts, const string &ids)
	CVcfSearchQuery. More...
const vector< ISeqLocSearchContext * > &	CVcfSearchQuery::GetVcfContexts () const
string	CVcfSearchQuery::GetIds () const
virtual string	CVcfSearchQuery::ToString () const
	Prepare a string representation of a query (for logging and debugging) More...
	CVcfSearchForm::CVcfSearchForm (CVcfSearchTool &tool)
	CVcfSearchForm. More...
virtual CIRef< IDMSearchQuery >	CVcfSearchForm::ConstructQuery ()
virtual wxSizer *	CVcfSearchForm::GetWidget (wxWindow *parent)
	return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget) More...
virtual void	CVcfSearchForm::UpdateContexts ()
	updates m_ContextCombo More...
virtual void	CVcfSearchForm::x_LoadSettings (const CRegistryReadView &)
virtual void	CVcfSearchForm::x_SaveSettings (CRegistryWriteView) const
	CVcfSearchJob::CVcfSearchJob (CVcfSearchQuery &query)
	CVcfSearchJob. More...
	CWigLoadManager::CWigLoadManager ()
	CWigLoadManager. More...
static string	CWigLoadManager::Id ()
static string	CWigLoadManager::Label ()
	CWigLoadManager::CPage::CPage (CWigLoadManager &manager)
virtual wxPanel *	CWigLoadManager::CPage::GetPanel ()
virtual bool	CWigLoadManager::CPage::CanLeavePage (bool)
CWigParamsPanel *	CWigLoadManager::x_GetParamsPanel ()
	CResolveIdDlg::CResolveIdDlg ()
	Constructors. More...
	CResolveIdDlg::CResolveIdDlg (wxWindow *parent, wxWindowID id=ID_CRESOLVEIDDLG, const wxString &caption=_("Check Sequence Identifiers"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL)
bool	CResolveIdDlg::Create (wxWindow *parent, wxWindowID id=ID_CRESOLVEIDDLG, const wxString &caption=_("Check Sequence Identifiers"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL)
	Creation. More...
	CResolveIdDlg::~CResolveIdDlg ()
	Destructor. More...
void	CResolveIdDlg::Init ()
	Initialises member variables. More...
void	CResolveIdDlg::SetData (const TData &data, TIdMap &map, objects::CScope &scope)
void	CResolveIdDlg::CreateControls ()
	Creates the controls and sizers. More...
wxBitmap	CResolveIdDlg::GetBitmapResource (const wxString &name)
	Retrieves bitmap resources. More...
wxIcon	CResolveIdDlg::GetIconResource (const wxString &name)
	Retrieves icon resources. More...
static bool	CResolveIdDlg::ShowToolTips ()
	Should we show tooltips? More...
virtual void	CResolveIdDlg::x_LoadSettings (const CRegistryReadView &view)
	override these functions in derived classes More...
virtual void	CResolveIdDlg::x_SaveSettings (CRegistryWriteView view) const

Variables
CObjectListWidget *	CCleanupPanel::m_ObjectList
CCleanupParams	CCleanupPanel::m_data
	The data edited by this window. More...
TConstScopedObjects *	CCleanupPanel::m_InputObjects
int	CCleanupParams::m_CleanupMode
string	CCleanupParams::m_RegPath
TConstScopedObjects	CCleanupParams::m_Objects
TConstScopedObjects	CCleanupTool::m_Objects
CCleanupParams	CCleanupTool::m_Params
CCleanupPanel *	CCleanupTool::m_Panel
CGBFlatFileLoadManager &	CGBFlatFileLoadManager::CPage::m_Manager
CUIObject	CGBFlatFileLoadManager::m_Descr
IServiceLocator *	CGBFlatFileLoadManager::m_SrvLocator { nullptr }
wxWindow *	CGBFlatFileLoadManager::m_ParentWindow { nullptr }
string	CGBFlatFileLoadManager::m_RegPath
EState	CGBFlatFileLoadManager::m_State { CGBFlatFileLoadManager::eInvalid }
CGBFlatFileParamsPanel *	CGBFlatFileLoadManager::m_ParamsPanel { nullptr }
CGBFlatFileLoadParams	CGBFlatFileLoadManager::m_Params
vector< wxString >	CGBFlatFileLoadManager::m_FileNames
CPage	CGBFlatFileLoadManager::m_OptionsPage
CRef< CGenBankUIDataSourceType >	CGenBankUIDataSource::m_Type
CRef< objects::CObjectManager >	CGenBankUIDataSource::m_ObjMgr
CUIObject	CGenBankUIDataSource::m_Descr
IServiceLocator *	CGenBankUIDataSource::m_SrvLocator
bool	CGenBankUIDataSource::m_Open
CUIObject	CGenBankUIDataSourceType::m_Descr
IServiceLocator *	CGenBankUILoadManager::m_SrvLocator
wxWindow *	CGenBankUILoadManager::m_ParentWindow
CUIObject	CGenBankUILoadManager::m_Descriptor
EState	CGenBankUILoadManager::m_State
string	CGenBankUILoadManager::m_RegPath
CGenBankLoadOptionPanel *	CGenBankUILoadManager::m_OptionPanel
CProjectSelectorPanel *	CGenBankUILoadManager::m_ProjectSelPanel
SProjectSelectorParams	CGenBankUILoadManager::m_ProjectParams
map< string, TConstScopedObjects >	CMergeTool::m_Objects
CMergeParams	CMergeTool::m_Params
CMergePanel *	CMergeTool::m_Panel
wxWindow *	CSeqTextView::m_Window
CConstRef< CObject >	CSeqTextView::m_OrigObj
string	CSNPSearchQuery::m_Terms
CRef< CSNPSearchQuery >	CSNPSearchJob::m_Query
CConstRef< CSerialObject >	CFeatTableView::m_OrigObject
	original data object passed to the view More...
CRef< objects::CScope >	CFeatTableView::m_Scope
CObjectIndex	CFeatTableView::m_ObjectIndex
wxPanel *	CFeatTableView::m_Panel
wxStatusBar *	CFeatTableView::m_StatusBar
CFeatTableWidget *	CFeatTableView::m_FTblWidget
CRef< CFeatTableDS >	CFeatTableView::m_DataSource
string	CFeatTableView::m_RegPath
CConstRef< objects::CSeq_id >	CViewGraphic::m_SeqId
CGraphicPanel *	CViewGraphic::m_GraphicPanel
CIRef< INonAsnTrackData >	CViewGraphic::m_NonAsnTrackData
TConstScopedObjects	CAutodefToolManager::m_SeqEntries
SAutodefParams	CAutodefToolManager::m_Params
CAutodefParamsPanel *	CAutodefToolManager::m_ParamsPanel
SAutodefParams	CAutodefJob::m_Params
CSeqDesktopPanel *	CSequinDesktopView::m_Window
string	CSrcEditParams::m_RegPath
TConstScopedObjects	CSrcEditParams::m_Objects
TConstScopedObjects	CSrcEditTool::m_Objects
CSrcEditParams	CSrcEditTool::m_Params
CSrcEditPanel *	CSrcEditTool::m_Panel
vector< wxString >	C5ColObjectLoader::m_FileNames
TObjects	C5ColObjectLoader::m_Objects
CAgpLoadParams	CAgpObjectLoader::m_Params
vector< wxString >	CAgpObjectLoader::m_FileNames
TObjects	CAgpObjectLoader::m_Objects
vector< string >	CAssemblyObjectLoader::m_Accessions
TObjects	CAssemblyObjectLoader::m_Objects
string	CAssemblyObjectLoader::m_Descr
CBedLoadParams	CBedObjectLoader::m_Params
vector< wxString >	CBedObjectLoader::m_FileNames
TObjects	CBedObjectLoader::m_Objects
wxString	CBedObjectLoader::m_CurrentFile
vector< CIRef< IObjectLoader > >	CChainLoader::m_Loaders
vector< CIRef< IExecuteUnit > >	CChainLoader::m_ExecuteUnits
TObjects	CChainLoader::m_Objects
CFastaLoadParams	CFASTAFormatParamsPanel::m_data
	@begin CFASTAFormatParamsPanel member variables More...
bool	CFastaLoadParams::m_ForceLocalIDs
bool	CFastaLoadParams::m_IgnoreGaps
int	CFastaLoadParams::m_LowercaseOption
bool	CFastaLoadParams::m_MakeDelta
bool	CFastaLoadParams::m_NoSplit
bool	CFastaLoadParams::m_ReadFirst
int	CFastaLoadParams::m_SeqType
bool	CFastaLoadParams::m_SkipInvalid
string	CFastaLoadParams::m_RegPath
CGBFlatFileLoadParams	CGBFlatFileObjectLoader::m_Params
vector< wxString >	CGBFlatFileObjectLoader::m_FileNames
TObjects	CGBFlatFileObjectLoader::m_Objects
CRef< objects::CScope >	CGBFlatFileObjectLoader::m_Scope
string	CGenBankLoadOptionPanel::CAccDescriptor::m_Accession
CRichTextCtrl *	CGenBankLoadOptionPanel::m_AccInput
CwxHtmlWindow *	CGenBankLoadOptionPanel::m_MRUWindow
int	CGenBankLoadOptionPanel::Token::m_Pos
int	CGenBankLoadOptionPanel::Token::m_Size
bool	CGenBankLoadOptionPanel::Token::m_Valid
bool	CGenBankLoadOptionPanel::Token::m_GenomicAccession
wxTextAttr	CGenBankLoadOptionPanel::m_DefStyle
wxTextAttr	CGenBankLoadOptionPanel::m_ErrStyle
int	CGenBankLoadOptionPanel::m_TokensNum
int	CGenBankLoadOptionPanel::m_ErrNum
TIdsVec	CGenBankLoadOptionPanel::m_Ids
vector< string >	CGenBankLoadOptionPanel::m_NAs
vector< string >	CGenBankLoadOptionPanel::m_GenomicAccessions
vector< string >	CGenBankLoadOptionPanel::m_ValidTokens
TMRUAccList	CGenBankLoadOptionPanel::m_AccMRUList
vector< CRef< CObject > >	CGBObjectLoader::m_Ids
vector< string >	CGBObjectLoader::m_NAs
TObjects	CGBObjectLoader::m_Objects
int	CGffLoadParams::m_FileFormat
CMapAssemblyParams	CGffLoadParams::m_MapAssembly
wxString	CGffLoadParams::m_NameFeatSet
int	CGffLoadParams::m_ParseSeqIds
string	CGffLoadParams::m_RegPath
CGffLoadParams	CGffObjectLoader::m_Params
vector< wxString >	CGffObjectLoader::m_FileNames
TObjects	CGffObjectLoader::m_Objects
CAssemblySelPanel *	CGffParamsPanel::m_AssemblyPanel
CGffLoadParams	CGffParamsPanel::m_data
	The data edited by this window. More...
vector< wxString >	CPhyObjectLoader::m_FileNames
TObjects	CPhyObjectLoader::m_Objects
CPslLoadParams	CPslObjectLoader::m_Params
vector< wxString >	CPslObjectLoader::m_FileNames
TObjects	CPslObjectLoader::m_Objects
CBedLoadParams	CVcfObjectLoader::m_Params
vector< wxString >	CVcfObjectLoader::m_FileNames
TObjects	CVcfObjectLoader::m_Objects
CWigLoadParams	CWigObjectLoader::m_Params
vector< wxString >	CWigObjectLoader::m_FileNames
TObjects	CWigObjectLoader::m_Objects
CUIObject	CPhyLoader::m_Descr
IServiceLocator *	CPhyLoader::m_SrvLocator
wxWindow *	CPhyLoader::m_ParentWindow
string	CPhyLoader::m_RegPath
vector< wxString >	CPhyLoader::m_FileNames
CUIObject	CRMLoader::m_Descr
IServiceLocator *	CRMLoader::m_SrvLocator
wxWindow *	CRMLoader::m_ParentWindow
vector< wxString >	CRMLoader::m_FileNames
IServiceLocator *	C5ColLoadManager::m_SrvLocator
string	C5ColLoadManager::m_RegPath
vector< wxString >	C5ColLoadManager::m_FileNames
CUIObject	C5ColLoadManager::m_Descr
CAgpLoader &	CAgpLoader::CPage::m_Manager
CUIObject	CAgpLoader::m_Descr
IServiceLocator *	CAgpLoader::m_SrvLocator
wxWindow *	CAgpLoader::m_ParentWindow
EState	CAgpLoader::m_State
string	CAgpLoader::m_RegPath
CAgpLoadPage *	CAgpLoader::m_ParamsPanel
CAgpLoadParams	CAgpLoader::m_Params
vector< wxString >	CAgpLoader::m_FileNames
CPage	CAgpLoader::m_OptionsPage
CBedLoadManager &	CBedLoadManager::CPage::m_Manager
CUIObject	CBedLoadManager::m_Descr
IServiceLocator *	CBedLoadManager::m_SrvLocator
wxWindow *	CBedLoadManager::m_ParentWindow
EState	CBedLoadManager::m_State
string	CBedLoadManager::m_RegPath
CBedParamsPanel *	CBedLoadManager::m_ParamsPanel
CBedLoadParams	CBedLoadManager::m_Params
vector< wxString >	CBedLoadManager::m_FileNames
CPage	CBedLoadManager::m_OptionsPage
CUIObject	CColumnarVCFLoaderManager::m_Descr
IServiceLocator *	CColumnarVCFLoaderManager::m_SrvLocator { nullptr }
wxWindow *	CColumnarVCFLoaderManager::m_ParentWindow { nullptr }
EState	CColumnarVCFLoaderManager::m_State
string	CColumnarVCFLoaderManager::m_RegPath
vector< wxString >	CColumnarVCFLoaderManager::m_FileNames
string	CColumnarVCFLoaderManager::m_AssmAcc
CRef< objects::CGC_Assembly >	CColumnarVCFLoaderManager::m_GenCollAssm
vector< CConstRef< objects::CSeq_id > >	CColumnarVCFLoaderManager::m_RefSeqIds
map< string, set< string > >	CColumnarVCFLoaderManager::m_MappedSeqIds
size_t	CColumnarVCFLoaderManager::m_TopLevelSeqCount = 0
CVcfRefSequencesPanel *	CColumnarVCFLoaderManager::m_RefSequencesPanel
CVcfColumnSelectionPanel *	CColumnarVCFLoaderManager::m_ColumnsPanel
CVcfSampleSelectionPanel *	CColumnarVCFLoaderManager::m_SamplesPanel
CVcfAssemblySelectionPanel *	CColumnarVCFLoaderManager::m_AssemblyPanel
CColumnarVCFReader	CColumnarVCFLoaderManager::m_VCFreader
TScopedLocs	CComponentSearchQuery::m_ScopedLocs
string	CComponentSearchQuery::m_Ids
CRef< CComponentSearchTool >	CComponentSearchForm::m_Tool
wxChoice *	CComponentSearchForm::m_DbCombo
vector< ISeqLocSearchContext * >	CComponentSearchForm::m_SeqLocContexts
CRef< CComponentSearchQuery >	CComponentSearchJob::m_Query
string	CCpgSearchQuery::m_SizeOfSlidingWindow
string	CCpgSearchQuery::m_MinLenOfIsland
string	CCpgSearchQuery::m_MinGC
string	CCpgSearchQuery::m_MinPercentage
string	CCpgSearchQuery::m_AdjMergeThreshold
CRef< CCpgSearchTool >	CCpgSearchForm::m_Tool
wxChoice *	CCpgSearchForm::m_DbCombo
wxTextCtrl *	CCpgSearchForm::m_SizeOfSlidingWindowCtl
wxTextCtrl *	CCpgSearchForm::m_MinLenOfIslandCtl
wxTextCtrl *	CCpgSearchForm::m_MinGCCtl
wxTextCtrl *	CCpgSearchForm::m_MinPercentageCtl
wxTextCtrl *	CCpgSearchForm::m_AdjMergeThresholdCtl
vector< ISeqLocSearchContext * >	CCpgSearchForm::m_SeqLocContexts
string	CCpgSearchForm::m_SizeOfSlidingWindow
string	CCpgSearchForm::m_MinLenOfIsland
string	CCpgSearchForm::m_MinGC
string	CCpgSearchForm::m_MinPercentage
string	CCpgSearchForm::m_AdjMergeThreshold
CRef< CCpgSearchQuery >	CCpgSearchJob::m_Query
string	CEntrezSearchQuery::m_Terms
string	CEntrezSearchQuery::m_DbName
CRef< CEntrezSearchQuery >	CEntrezSearchJob::m_Query
CFASTAFormatLoadManager &	CFASTAFormatLoadManager::CPage::m_Manager
CUIObject	CFASTAFormatLoadManager::m_Descr
IServiceLocator *	CFASTAFormatLoadManager::m_SrvLocator
wxWindow *	CFASTAFormatLoadManager::m_ParentWindow
EState	CFASTAFormatLoadManager::m_State
string	CFASTAFormatLoadManager::m_RegPath
CFASTAFormatParamsPanel *	CFASTAFormatLoadManager::m_ParamsPanel
CFastaLoadParams	CFASTAFormatLoadManager::m_Params
vector< wxString >	CFASTAFormatLoadManager::m_FileNames
CPage	CFASTAFormatLoadManager::m_OptionsPage
string	CFeatureSearchQuery::m_Pattern
TPatternType	CFeatureSearchQuery::m_PatternType
bool	CFeatureSearchQuery::m_CaseSensitive
TFeatTypeItemSet	CFeatureSearchQuery::m_FeatTypesSet
set< string >	CFeatureSearchQuery::m_AnnotNames
	Feature types to search. More...
CRef< CFeatureSearchQuery >	CFeatureSearchJob::m_Query
TPatternType	CFeatureSearchJob::m_PatternType
string	CFeatureSearchJob::m_SearchStr
CRegexp *	CFeatureSearchJob::m_Pattern
	search patteern for "Exact Match" and "Wildcard" modes More...
bool	CFeatureSearchJob::m_CaseSensitive
	regular expression to apply More...
CGffLoadManager &	CGffLoadManager::CPage::m_Manager
IServiceLocator *	CGffLoadManager::m_SrvLocator
wxWindow *	CGffLoadManager::m_ParentWindow
EState	CGffLoadManager::m_State
string	CGffLoadManager::m_RegPath
CGffParamsPanel *	CGffLoadManager::m_ParamsPanel
CGffLoadParams	CGffLoadManager::m_Params
vector< wxString >	CGffLoadManager::m_FileNames
CUIObject	CGffLoadManager::m_Descr
CPage	CGffLoadManager::m_OptionsPage
string	COrfSearchQuery::m_Gencode
string	COrfSearchQuery::m_StartOrf
string	COrfSearchQuery::m_MinPairs
string	COrfSearchForm::SKozakPattern::m_Name
string	COrfSearchForm::SKozakPattern::m_Regexp
int	COrfSearchForm::SKozakPattern::m_Codon_pos
static TKozakList	COrfSearchForm::m_Kozak
CRef< COrfSearchTool >	COrfSearchForm::m_Tool
wxChoice *	COrfSearchForm::m_DbCombo
wxChoice *	COrfSearchForm::m_GencodeCombo
wxChoice *	COrfSearchForm::m_StartorfCombo
wxTextCtrl *	COrfSearchForm::m_BasepairsText
vector< ISeqLocSearchContext * >	COrfSearchForm::m_SeqLocContexts
string	COrfSearchForm::m_Gencode
string	COrfSearchForm::m_StartOrf
string	COrfSearchForm::m_MinPairs
CRef< COrfSearchQuery >	COrfSearchJob::m_Query
int	COrfSearchJob::m_ColorCol
COrfSearchForm::TKozakList	COrfSearchJob::m_KozakList
string	CSequenceSearchQuery::m_Pattern
TPatternType	CSequenceSearchQuery::m_PatternType
string	CSequenceSearchQuery::m_PatternFile
static TFileList	CSequenceSearchForm::m_FileList
	CSequenceSearchForm. More...
CRef< CSequenceSearchTool >	CSequenceSearchForm::m_Tool
wxChoice *	CSequenceSearchForm::m_DbCombo
wxChoice *	CSequenceSearchForm::m_TypeCombo
wxChoice *	CSequenceSearchForm::m_PatternCombo
vector< ISeqLocSearchContext * >	CSequenceSearchForm::m_SeqLocContexts
TPatternType	CSequenceSearchForm::m_PatternType
string	CSequenceSearchForm::m_SearchPattern
wxFlexGridSizer *	CSequenceSearchForm::m_pSearchSizer
wxFlexGridSizer *	CSequenceSearchForm::m_pPatternSizer
CRef< CSequenceSearchQuery >	CSequenceSearchJob::m_Query
TPatternType	CSequenceSearchJob::m_PatternType
string	CSequenceSearchJob::m_SearchStr
CRegexp *	CSequenceSearchJob::m_Pattern
	search patteern for "Exact Match" and "Wildcard" modes More...
string	CSequenceSearchJob::m_PatternFile
	regular expression to apply More...
CTextPanel *	CTextView::m_Window
bool	CTextView::m_UsingStatusBar
CVCFLoaderManager &	CVCFLoaderManager::CPage::m_Manager
CUIObject	CVCFLoaderManager::m_Descr
IServiceLocator *	CVCFLoaderManager::m_SrvLocator
wxWindow *	CVCFLoaderManager::m_ParentWindow
EState	CVCFLoaderManager::m_State
string	CVCFLoaderManager::m_RegPath
CBedParamsPanel *	CVCFLoaderManager::m_ParamsPanel
CBedLoadParams	CVCFLoaderManager::m_Params
vector< wxString >	CVCFLoaderManager::m_FileNames
CPage	CVCFLoaderManager::m_OptionsPage
vector< ISeqLocSearchContext * >	CVcfSearchQuery::m_VcfContexts
string	CVcfSearchQuery::m_Ids
CRef< CVcfSearchTool >	CVcfSearchForm::m_Tool
wxChoice *	CVcfSearchForm::m_DbCombo
CRef< CVcfSearchQuery >	CVcfSearchJob::m_Query
CWigLoadManager &	CWigLoadManager::CPage::m_Manager
CUIObject	CWigLoadManager::m_Descr
IServiceLocator *	CWigLoadManager::m_SrvLocator
wxWindow *	CWigLoadManager::m_ParentWindow
EState	CWigLoadManager::m_State
string	CWigLoadManager::m_RegPath
CWigParamsPanel *	CWigLoadManager::m_ParamsPanel
CWigLoadParams	CWigLoadManager::m_Params
vector< wxString >	CWigLoadManager::m_FileNames
CPage	CWigLoadManager::m_OptionsPage
wxGrid *	CResolveIdDlg::m_Grid

Friends
class	CCleanupParams::CCleanupPanel
class	CSeqTextView::CSeqTextViewFactory
class	CFeatTableView::CFeatTableViewFactory
class	CViewGraphic::CViewGraphicFactory
class	CSequinDesktopView::CSequinDesktopViewFactory
class	CSrcEditParams::CSrcEditPanel
class	CFastaLoadParams::CFASTAFormatParamsPanel
class	CGffLoadParams::CGffParamsPanel
class	CTextView::CTextViewFactory

CSearchJobBase overridables
virtual bool	CFeatureSearchJob::x_ValidateParams ()
	returns true if Job params are correct, implement in derived classes More...
virtual EJobState	CFeatureSearchJob::x_DoSearch ()
	performs searching, assuming that params are correct; Implement in derived classes More...
virtual void	CFeatureSearchJob::x_SetupColumns (CObjectList &obj_list)
	add custom columns if needed More...

CAlgoToolManagerParamsPanel implementation
void	CCleanupPanel::RestoreDefaults ()
	override in derived classes More...

IRegSettings interface implementation
virtual void	CCleanupPanel::LoadSettings ()
virtual void	CCleanupPanel::SaveSettings () const
	override in derived classes More...

overriding IUIToolManager functions implemented in CAlgoToolManagerBase
virtual void	CCleanupTool::InitUI ()
	override this function in a derived class and initialize extra members More...
virtual void	CCleanupTool::CleanUI ()
	override this function in a derived class and clean extra members More...
virtual bool	CCleanupTool::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CCleanupTool::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CCleanupTool::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...

IExtension interface implementation
virtual string	CCleanupTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CCleanupTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

overriding CAlgoToolManagerBase virtual functions
virtual CAlgoToolManagerParamsPanel *	CCleanupTool::x_GetParamsPanel ()
	returns a pointer to the parameters panel, override in derived classes More...
virtual IRegSettings *	CCleanupTool::x_GetParamsAsRegSetting ()
	return a pointer to Parameters object as IRegSettings interface More...
virtual bool	CCleanupTool::x_CreateParamsPanelIfNeeded ()
	returns / creates Parameters panel, override in derived classes see cpp file for example More...
virtual bool	CCleanupTool::x_ValidateParams ()
	validates user input in Parameters panel, report errors if any More...
virtual CDataLoadingAppJob *	CCleanupTool::x_CreateLoadingJob ()
	factory method for creating the job that executes the tool algorithm override in derived classes More...

IFileLoadPanelClient interface implementation
virtual string	CGBFlatFileLoadManager::GetLabel () const
virtual wxString	CGBFlatFileLoadManager::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CGBFlatFileLoadManager::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CGBFlatFileLoadManager::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CGBFlatFileLoadManager::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CGBFlatFileLoadManager::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CGBFlatFileLoadManager::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CGBFlatFileLoadManager::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CGBFlatFileLoadManager::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CGBFlatFileLoadManager::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CGBFlatFileLoadManager::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CGBFlatFileLoadManager::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CGBFlatFileLoadManager::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CGBFlatFileLoadManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CGBFlatFileLoadManager::GetExecuteUnit ()
virtual IWizardPage *	CGBFlatFileLoadManager::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual IWizardPage *	CGBFlatFileLoadManager::GetOptionsPage ()
	Returns page for tool options (long wizard path via "Options" button) More...
virtual void	CGBFlatFileLoadManager::SetPrevPage (IWizardPage *prevPage)
	Sets a wizard page which should show before the first page of the tool. More...
virtual wxString	CGBFlatFileLoadManager::GetFormatWildcard ()
virtual bool	CGBFlatFileLoadManager::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CGBFlatFileLoadManager::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CGBFlatFileLoadManager::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CGBFlatFileLoadManager::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CGBFlatFileLoadManager::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CGBFlatFileLoadManager::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CGBFlatFileLoadManager::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CGBFlatFileLoadManager::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	CGBFlatFileLoadManager::SetRegistryPath (const string &path)
virtual void	CGBFlatFileLoadManager::LoadSettings ()
virtual void	CGBFlatFileLoadManager::SaveSettings () const

IExtension interface implementation
virtual string	CGenBankUIDataSource::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CGenBankUIDataSource::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IServiceLocatorConsumer implementation
virtual void	CGenBankUIDataSource::SetServiceLocator (IServiceLocator *locator)

IUIDataSource interface implementation
virtual IUIDataSourceType &	CGenBankUIDataSource::GetType () const
virtual const IUIObject &	CGenBankUIDataSource::GetDescr ()
	returns UI description of the object (label, icon etc.) More...
virtual bool	CGenBankUIDataSource::IsOpen ()
	a Data source needs to be open before use and closed after. More...
virtual bool	CGenBankUIDataSource::Open ()
	Prepares Data Source for use, any initialization that can be potentially time-consuming or may require error handling shall be done in this function, not in a constructor. More...
virtual bool	CGenBankUIDataSource::Close ()
virtual void	CGenBankUIDataSource::EditProperties ()
virtual IUIToolManager *	CGenBankUIDataSource::GetLoadManager ()
virtual int	CGenBankUIDataSource::GetDefaultCommand ()
virtual wxEvtHandler *	CGenBankUIDataSource::CreateEvtHandler ()

IExplorerItemCmdContributor implementation
virtual IExplorerItemCmdContributor::TContribution	CGenBankUIDataSource::GetMenu (wxTreeCtrl &treeCtrl, PT::TItems &items)
	for the given set of items returns a contribution More...

IUIDataSourceType interface implementation
virtual const IUIObject &	CGenBankUIDataSourceType::GetDescr ()
	returns UI description of the type (label, icon etc.) More...
virtual IUIDataSource *	CGenBankUIDataSourceType::CreateDataSource ()
	factory method; create an Data Source instance More...
virtual bool	CGenBankUIDataSourceType::AutoCreateDefaultDataSource ()
	returns "true" if this type needs to create a default instance of the Data Source at start-up More...

IExtension interface implementation
virtual string	CGenBankUIDataSourceType::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CGenBankUIDataSourceType::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IUIToolManager interface implementation
virtual void	CGenBankUILoadManager::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CGenBankUILoadManager::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CGenBankUILoadManager::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CGenBankUILoadManager::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CGenBankUILoadManager::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CGenBankUILoadManager::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CGenBankUILoadManager::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CGenBankUILoadManager::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CGenBankUILoadManager::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CGenBankUILoadManager::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CGenBankUILoadManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...

IRegSettings interface implementation
virtual void	CGenBankUILoadManager::SetRegistryPath (const string &path)
virtual void	CGenBankUILoadManager::LoadSettings ()
virtual void	CGenBankUILoadManager::SaveSettings () const

overriding IUIToolManager functions implemented in CAlgoToolManagerBase
virtual void	CMergeTool::InitUI ()
	override this function in a derived class and initialize extra members More...
virtual void	CMergeTool::CleanUI ()
	override this function in a derived class and clean extra members More...
virtual bool	CMergeTool::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CMergeTool::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CMergeTool::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...

IExtension interface implementation
virtual string	CMergeTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CMergeTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

overriding CAlgoToolManagerBase virtual functions
virtual CAlgoToolManagerParamsPanel *	CMergeTool::x_GetParamsPanel ()
	returns a pointer to the parameters panel, override in derived classes More...
virtual IRegSettings *	CMergeTool::x_GetParamsAsRegSetting ()
	return a pointer to Parameters object as IRegSettings interface More...
virtual bool	CMergeTool::x_CreateParamsPanelIfNeeded ()
	returns / creates Parameters panel, override in derived classes see cpp file for example More...
virtual bool	CMergeTool::x_ValidateParams ()
	validates user input in Parameters panel, report errors if any More...
virtual CDataLoadingAppJob *	CMergeTool::x_CreateLoadingJob ()
	factory method for creating the job that executes the tool algorithm override in derived classes More...

IWMClient interface implementation
virtual wxWindow *	CSeqTextView::GetWindow ()
	returns a pointer to the wxWindow representing the client More...
virtual wxEvtHandler *	CSeqTextView::GetCommandHandler ()
	IWMClient implementation. More...

IView implementation
@(
virtual const CViewTypeDescriptor &	CSeqTextView::GetTypeDescriptor () const
	return an object providing meta information about thei view type More...
virtual void	CSeqTextView::CreateViewWindow (wxWindow *parent)
	create Window corresponding to the view More...
virtual void	CSeqTextView::DestroyViewWindow ()
	destroy Window corresponding to the view More...

IProjectView implementation
virtual bool	CSeqTextView::InitView (TConstScopedObjects &objects, const objects::CUser_object *params)
	initialize view with data, inside this function the view must call CProjectService::AttachView to connect to a project More...

ISelectionClient Implementation
virtual void	CSeqTextView::GetSelection (CSelectionEvent &evt) const
	get selection for broadcasting More...
virtual void	CSeqTextView::GetSelection (TConstScopedObjects &objs) const
	shall return data objects representing selected things, return one data object for every selected thing. More...
virtual void	CSeqTextView::GetMainObject (TConstScopedObjects &objs) const
	Adds the main data objects represented by the client to "objects". More...

IExtension interface implementation
virtual string	CSeqTextViewFactory::GetExtensionIdentifier () const
	CSeqTextViewFactory. More...
virtual string	CSeqTextViewFactory::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IProjectViewFactory interface implementation
virtual IView *	CSeqTextViewFactory::CreateInstance () const
	creates a view instance More...
virtual IView *	CSeqTextViewFactory::CreateInstanceByFingerprint (const TFingerprint &fingerprint) const
	if fingerprint is recognized - creates and returns a new instance More...
virtual void	CSeqTextViewFactory::RegisterIconAliases (wxFileArtProvider &provider)
	called by the framework to give Factory a chance to register images used by view More...
virtual const CProjectViewTypeDescriptor &	CSeqTextViewFactory::GetProjectViewTypeDescriptor () const
	returns a Descriptor for the View Type supported by the Factory More...
virtual int	CSeqTextViewFactory::TestInputObjects (TConstScopedObjects &objects)
	tests input objects (not using object conversion) and returns a combination of ETestResult flags better name is IsCompatibleWith() More...
virtual bool	CSeqTextViewFactory::IsCompatibleWith (const CObject &object, objects::CScope &scope)

IUITool implementation
virtual IUITool *	CSNPSearchTool::Clone () const
virtual string	CSNPSearchTool::GetName () const
	returns unique name of the method that is used in UI to identify it More...
virtual string	CSNPSearchTool::GetDescription () const
	returns a detailed description of the method that is used in UI More...

IDMSearchTool implementation
virtual CIRef< IDMSearchForm >	CSNPSearchTool::CreateSearchForm ()
	factory method for creating a form representing the tool More...
virtual bool	CSNPSearchTool::IsCompatible (IDataMiningContext *context)
	retuns true if the tool is compatible with the provided Search Context More...

IExtension implementation
virtual string	CSNPSearchTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CSNPSearchTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IDMSearchForm implementation
typedef pair< string, string >	CSNPSearchForm::TStrPair
typedef vector< TStrPair >	CSNPSearchForm::TNamePairs
CRef< CSNPSearchTool >	CSNPSearchForm::m_Tool
virtual void	CSNPSearchForm::Create ()
virtual void	CSNPSearchForm::Init ()
virtual void	CSNPSearchForm::Update ()
virtual CIRef< IDMSearchQuery >	CSNPSearchForm::ConstructQuery ()
virtual wxSizer *	CSNPSearchForm::GetWidget (wxWindow *parent)
	return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget) More...
virtual void	CSNPSearchForm::UpdateContexts ()
	updates m_ContextCombo More...
virtual void	CSNPSearchForm::x_LoadSettings (const CRegistryReadView &view)
virtual void	CSNPSearchForm::x_SaveSettings (CRegistryWriteView view) const
IDMSearchTool *	CSNPSearchForm::x_GetTool (void)

CSearchJobBase overridables
virtual bool	CSNPSearchJob::x_ValidateParams ()
	returns true if Job params are correct, implement in derived classes More...
virtual EJobState	CSNPSearchJob::x_DoSearch ()
	performs searching, assuming that params are correct; Implement in derived classes More...
virtual void	CSNPSearchJob::x_SetupColumns (CObjectList &obj_list)
	add custom columns if needed More...
virtual CObjectListTableModel *	CSNPSearchJob::x_GetNewOLTModel () const
	factory method creating new column handler for CObjectListWidget More...

IWMClient interface implementation
virtual wxWindow *	CFeatTableView::GetWindow ()
	returns a pointer to the wxWindow representing the client More...

IView interface implementation
virtual const CViewTypeDescriptor &	CFeatTableView::GetTypeDescriptor () const
	return an object providing meta information about thei view type More...
virtual void	CFeatTableView::CreateViewWindow (wxWindow *parent)
	create Window corresponding to the view More...
virtual void	CFeatTableView::DestroyViewWindow ()
	destroy Window corresponding to the view More...

IProjectView implementation
virtual bool	CFeatTableView::InitView (TConstScopedObjects &objects, const objects::CUser_object *params)
	initialize view with data, inside this function the view must call CProjectService::AttachView to connect to a project More...
virtual void	CFeatTableView::OnProjectChanged (CProjectViewEvent &evt)
virtual void	CFeatTableView::OnProjectChanged ()

ISelectionClient Implementation
virtual void	CFeatTableView::GetSelection (CSelectionEvent &evt) const
	get selection for broadcasting More...
virtual void	CFeatTableView::GetSelection (TConstScopedObjects &objs) const
	shall return data objects representing selected things, return one data object for every selected thing. More...

CProjectViewBase overridables
virtual void	CFeatTableView::GetCompatibleToolBars (vector< string > &names)
	returns the names of toolbars compatible with this class (toolbars that are relevant and useful in the context of this class) More...
virtual void	CFeatTableView::GetVisibleRanges (CVisibleRange &vrange) const
	populate a visible range event for broadcasting More...

CProjectView callback overridables
virtual void	CFeatTableView::OnWidgetRangeChanged ()
virtual void	CFeatTableView::OnWidgetSelChanged ()

IRegSettings interface implementation
virtual void	CFeatTableView::SetRegistryPath (const string &reg_path)
virtual void	CFeatTableView::LoadSettings ()
virtual void	CFeatTableView::SaveSettings () const

CProjectView overridables
objects::CScope *	CFeatTableView::x_PreAttachToProject (TConstScopedObjects &objects)
void	CFeatTableView::x_PostAttachToProject ()

IExtension interface implementation
virtual string	CFeatTableViewFactory::GetExtensionIdentifier () const
	CFeatTableViewFactory. More...
virtual string	CFeatTableViewFactory::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IProjectViewFactory interface implementation
virtual IView *	CFeatTableViewFactory::CreateInstance () const
	creates a view instance More...
virtual IView *	CFeatTableViewFactory::CreateInstanceByFingerprint (const TFingerprint &fingerprint) const
	if fingerprint is recognized - creates and returns a new instance More...
virtual void	CFeatTableViewFactory::RegisterIconAliases (wxFileArtProvider &provider)
	called by the framework to give Factory a chance to register images used by view More...
virtual const CProjectViewTypeDescriptor &	CFeatTableViewFactory::GetProjectViewTypeDescriptor () const
	returns a Descriptor for the View Type supported by the Factory More...
virtual bool	CFeatTableViewFactory::IsCompatibleWith (const CObject &object, objects::CScope &scope)
virtual int	CFeatTableViewFactory::TestInputObjects (TConstScopedObjects &objects)
	tests input objects (not using object conversion) and returns a combination of ETestResult flags better name is IsCompatibleWith() More...

IWMClient interface implementation
virtual wxWindow *	CViewGraphic::GetWindow ()
	returns a pointer to the wxWindow representing the client More...
virtual const wxMenu *	CViewGraphic::GetMenu ()
	returns a menu (must be deleted by the caller) menu injections should follow a separator named "Contribs" More...

IView interface implementation
virtual const CViewTypeDescriptor &	CViewGraphic::GetTypeDescriptor () const
	return an object providing meta information about thei view type More...
virtual void	CViewGraphic::CreateViewWindow (wxWindow *parent)
	create Window corresponding to the view More...
virtual void	CViewGraphic::DestroyViewWindow ()
	destroy Window corresponding to the view More...

IProjectView implementation
virtual bool	CViewGraphic::InitView (TConstScopedObjects &objects, const objects::CUser_object *params)
	initialize view with data, inside this function the view must call CProjectService::AttachView to connect to a project More...
virtual void	CViewGraphic::OnProjectChanged (CProjectViewEvent &evt)
virtual void	CViewGraphic::SetOrigObject (SConstScopedObject &obj)

IViewSettingsAtProject implementation
void	CViewGraphic::SaveSettingsAtProject (objects::CGBProjectHandle &project) const

ISelectionClient Implementation
void	CViewGraphic::GetSelection (CSelectionEvent &evt) const
	get selection for broadcasting More...
void	CViewGraphic::GetSelection (TConstScopedObjects &objs) const
	shall return data objects representing selected things, return one data object for every selected thing. More...

IVisibleRangeClient interface implementation
virtual void	CViewGraphic::OnVisibleRangeChanged (const CVisibleRange &vrange, IVisibleRangeClient *source)

IDataMiningContext Implementation
virtual string	CViewGraphic::GetDMContextName ()
	returns Name of the context to be used in UI More...

CProjectView overridables
virtual void	CViewGraphic::GetVisibleRanges (CVisibleRange &vrange) const
	populate a visible range event for broadcasting More...
virtual void	CViewGraphic::OnWidgetRangeChanged ()

CProjectViewBase overridables
virtual void	CViewGraphic::OnViewAttached (IView &)
virtual void	CViewGraphic::OnViewReleased (IView &)

IExtension interface implementation
virtual string	CViewGraphicFactory::GetExtensionIdentifier () const
	CViewGraphicFactory. More...
virtual string	CViewGraphicFactory::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IProjectViewFactory interface implementation
virtual IView *	CViewGraphicFactory::CreateInstance () const
	creates a view instance More...
virtual IView *	CViewGraphicFactory::CreateInstanceByFingerprint (const TFingerprint &fingerprint) const
	if fingerprint is recognized - creates and returns a new instance More...
virtual void	CViewGraphicFactory::RegisterIconAliases (wxFileArtProvider &provider)
	called by the framework to give Factory a chance to register images used by view More...
virtual void	CViewGraphicFactory::RegisterCommands (CUICommandRegistry &cmd_reg, wxFileArtProvider &provider)
	called by the framework to give Factory a chance to register commands used by view More...
virtual const CProjectViewTypeDescriptor &	CViewGraphicFactory::GetProjectViewTypeDescriptor () const
	returns a Descriptor for the View Type supported by the Factory More...
virtual int	CViewGraphicFactory::TestInputObjects (TConstScopedObjects &objects)
	tests input objects (not using object conversion) and returns a combination of ETestResult flags better name is IsCompatibleWith() More...
virtual bool	CViewGraphicFactory::IsCompatibleWith (const CObject &object, objects::CScope &scope)

overriding IUIToolManager functions implemented in CAlgoToolManagerBase
virtual void	CAutodefToolManager::InitUI ()
	override this function in a derived class and initialize extra members More...
virtual void	CAutodefToolManager::CleanUI ()
	override this function in a derived class and clean extra members More...
virtual IAppTask *	CAutodefToolManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...

IExtension interface implementation
virtual string	CAutodefToolManager::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CAutodefToolManager::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

overriding CAlgoToolManagerBase virtual functions
virtual CAlgoToolManagerParamsPanel *	CAutodefToolManager::x_GetParamsPanel ()
	returns a pointer to the parameters panel, override in derived classes More...
virtual IRegSettings *	CAutodefToolManager::x_GetParamsAsRegSetting ()
	return a pointer to Parameters object as IRegSettings interface More...
virtual bool	CAutodefToolManager::x_CreateParamsPanelIfNeeded ()
	returns / creates Parameters panel, override in derived classes see cpp file for example More...
virtual bool	CAutodefToolManager::x_ValidateParams ()
	validates user input in Parameters panel, report errors if any More...
virtual void	CAutodefToolManager::x_CreateProjectPanelIfNeeded ()
	returns / creates Project panel More...
virtual CDataLoadingAppJob *	CAutodefToolManager::x_CreateLoadingJob ()
	factory method for creating the job that executes the tool algorithm override in derived classes More...

IGuiWidgetHost implementation
virtual void	CSequinDesktopView::CloseWidget ()
	IGuiWidgetHost implementation. More...
virtual void	CSequinDesktopView::WidgetSelectionChanged ()
virtual void	CSequinDesktopView::WidgetActivated ()
virtual void	CSequinDesktopView::GetAppSelection (TConstObjects &objects)
virtual void	CSequinDesktopView::OnWidgetCommand (const string &command)
virtual void	CSequinDesktopView::ShowView (const string &viewName, FWindowFactory widgetFactory, TConstScopedObjects &objects, bool bFloat)

IWMClient interface implementation
virtual wxWindow *	CSequinDesktopView::GetWindow ()
	returns a pointer to the wxWindow representing the client More...
virtual wxEvtHandler *	CSequinDesktopView::GetCommandHandler ()
	IWMClient implementation. More...

IMenuContributor interface implementation
virtual const wxMenu *	CSequinDesktopView::GetMenu ()
	returns a menu (must be deleted by the caller) menu injections should follow a separator named "Contribs" More...

IView implementation
@(
virtual const CViewTypeDescriptor &	CSequinDesktopView::GetTypeDescriptor () const
	return an object providing meta information about thei view type More...
virtual void	CSequinDesktopView::CreateViewWindow (wxWindow *parent)
	create Window corresponding to the view More...
virtual void	CSequinDesktopView::DestroyViewWindow ()
	destroy Window corresponding to the view More...

IProjectView implementation
virtual bool	CSequinDesktopView::InitView (TConstScopedObjects &objects, const objects::CUser_object *params)
	initialize view with data, inside this function the view must call CProjectService::AttachView to connect to a project More...
virtual void	CSequinDesktopView::OnProjectChanged (CProjectViewEvent &evt)

ISelectionClient Implementation
virtual void	CSequinDesktopView::GetSelection (CSelectionEvent &evt) const
	get selection for broadcasting More...
virtual void	CSequinDesktopView::GetSelection (TConstScopedObjects &objs) const
	shall return data objects representing selected things, return one data object for every selected thing. More...
virtual void	CSequinDesktopView::GetMainObject (TConstScopedObjects &objs) const
	Adds the main data objects represented by the client to "objects". More...

IExtension interface implementation
virtual string	CSequinDesktopViewFactory::GetExtensionIdentifier () const
	CSequinDesktopViewFactory. More...
virtual string	CSequinDesktopViewFactory::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IProjectViewFactory interface implementation
virtual IView *	CSequinDesktopViewFactory::CreateInstance () const
	creates a view instance More...
virtual IView *	CSequinDesktopViewFactory::CreateInstanceByFingerprint (const TFingerprint &fingerprint) const
	if fingerprint is recognized - creates and returns a new instance More...
virtual void	CSequinDesktopViewFactory::RegisterIconAliases (wxFileArtProvider &provider)
	called by the framework to give Factory a chance to register images used by view More...
virtual void	CSequinDesktopViewFactory::RegisterCommands (CUICommandRegistry &cmd_reg, wxFileArtProvider &provider)
	called by the framework to give Factory a chance to register commands used by view More...
virtual const CProjectViewTypeDescriptor &	CSequinDesktopViewFactory::GetProjectViewTypeDescriptor () const
	returns a Descriptor for the View Type supported by the Factory More...
virtual int	CSequinDesktopViewFactory::TestInputObjects (TConstScopedObjects &objects)
	tests input objects (not using object conversion) and returns a combination of ETestResult flags better name is IsCompatibleWith() More...

COpenViewManager implementation
virtual string	CSequinDesktopViewFactory::GetTargetType () const
virtual bool	CSequinDesktopViewFactory::AllowMerge () const

overriding IUIToolManager functions implemented in CAlgoToolManagerBase
virtual void	CSrcEditTool::InitUI ()
	override this function in a derived class and initialize extra members More...
virtual void	CSrcEditTool::CleanUI ()
	override this function in a derived class and clean extra members More...
virtual bool	CSrcEditTool::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CSrcEditTool::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CSrcEditTool::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...

IExtension interface implementation
virtual string	CSrcEditTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CSrcEditTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

overriding CAlgoToolManagerBase virtual functions
virtual CAlgoToolManagerParamsPanel *	CSrcEditTool::x_GetParamsPanel ()
	returns a pointer to the parameters panel, override in derived classes More...
virtual IRegSettings *	CSrcEditTool::x_GetParamsAsRegSetting ()
	return a pointer to Parameters object as IRegSettings interface More...
virtual bool	CSrcEditTool::x_CreateParamsPanelIfNeeded ()
	returns / creates Parameters panel, override in derived classes see cpp file for example More...
virtual bool	CSrcEditTool::x_ValidateParams ()
	validates user input in Parameters panel, report errors if any More...
virtual CDataLoadingAppJob *	CSrcEditTool::x_CreateLoadingJob ()
	factory method for creating the job that executes the tool algorithm override in derived classes More...

IObjectLoader implementation
virtual TObjects &	C5ColObjectLoader::GetObjects ()
virtual string	C5ColObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	C5ColObjectLoader::PreExecute ()
virtual bool	C5ColObjectLoader::Execute (ICanceled &canceled)
virtual bool	C5ColObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CAgpObjectLoader::GetObjects ()
virtual string	CAgpObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CAgpObjectLoader::PreExecute ()
virtual bool	CAgpObjectLoader::Execute (ICanceled &canceled)
virtual bool	CAgpObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CAssemblyObjectLoader::GetObjects ()
virtual string	CAssemblyObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CAssemblyObjectLoader::PreExecute ()
virtual bool	CAssemblyObjectLoader::Execute (ICanceled &canceled)
virtual bool	CAssemblyObjectLoader::PostExecute ()

IGencollSvcErrors implementation
virtual void	CAssemblyObjectLoader::ReportError (const string &accession, const string &error)

IObjectLoader implementation
virtual TObjects &	CBedObjectLoader::GetObjects ()
virtual string	CBedObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CBedObjectLoader::PreExecute ()
virtual bool	CBedObjectLoader::Execute (ICanceled &canceled)
virtual bool	CBedObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CChainLoader::GetObjects ()
virtual string	CChainLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CChainLoader::PreExecute ()
virtual bool	CChainLoader::Execute (ICanceled &canceled)
virtual bool	CChainLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CGBFlatFileObjectLoader::GetObjects ()
virtual string	CGBFlatFileObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CGBFlatFileObjectLoader::PreExecute ()
virtual bool	CGBFlatFileObjectLoader::Execute (ICanceled &canceled)
virtual bool	CGBFlatFileObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CGBObjectLoader::GetObjects ()
virtual string	CGBObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CGBObjectLoader::PreExecute ()
virtual bool	CGBObjectLoader::Execute (ICanceled &canceled)
virtual bool	CGBObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CGffObjectLoader::GetObjects ()
virtual string	CGffObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CGffObjectLoader::PreExecute ()
virtual bool	CGffObjectLoader::Execute (ICanceled &canceled)
virtual bool	CGffObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CPhyObjectLoader::GetObjects ()
virtual string	CPhyObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CPhyObjectLoader::PreExecute ()
virtual bool	CPhyObjectLoader::Execute (ICanceled &canceled)
virtual bool	CPhyObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CPslObjectLoader::GetObjects ()
virtual string	CPslObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CPslObjectLoader::PreExecute ()
virtual bool	CPslObjectLoader::Execute (ICanceled &canceled)
virtual bool	CPslObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CVcfObjectLoader::GetObjects ()
virtual string	CVcfObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CVcfObjectLoader::PreExecute ()
virtual bool	CVcfObjectLoader::Execute (ICanceled &canceled)
virtual bool	CVcfObjectLoader::PostExecute ()

IObjectLoader implementation
virtual TObjects &	CWigObjectLoader::GetObjects ()
virtual string	CWigObjectLoader::GetDescription () const

IExecuteUnit implementation
virtual bool	CWigObjectLoader::PreExecute ()
virtual bool	CWigObjectLoader::Execute (ICanceled &canceled)
virtual bool	CWigObjectLoader::PostExecute ()

IFileLoadPanelClient interface implementation
virtual string	CPhyLoader::GetLabel () const
virtual wxString	CPhyLoader::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CPhyLoader::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CPhyLoader::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CPhyLoader::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CPhyLoader::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CPhyLoader::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CPhyLoader::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CPhyLoader::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CPhyLoader::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CPhyLoader::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CPhyLoader::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CPhyLoader::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CPhyLoader::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CPhyLoader::GetExecuteUnit ()
virtual IWizardPage *	CPhyLoader::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual wxString	CPhyLoader::GetFormatWildcard ()
virtual bool	CPhyLoader::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CPhyLoader::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CPhyLoader::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CPhyLoader::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CPhyLoader::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CPhyLoader::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CPhyLoader::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CPhyLoader::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	CPhyLoader::SetRegistryPath (const string &path)
virtual void	CPhyLoader::LoadSettings ()
virtual void	CPhyLoader::SaveSettings () const

IFileLoadPanelClient interface implementation
virtual string	CRMLoader::GetLabel () const
virtual wxString	CRMLoader::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CRMLoader::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CRMLoader::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CRMLoader::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CRMLoader::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CRMLoader::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CRMLoader::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CRMLoader::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CRMLoader::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CRMLoader::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CRMLoader::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CRMLoader::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CRMLoader::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CRMLoader::GetExecuteUnit ()
virtual IWizardPage *	CRMLoader::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual wxString	CRMLoader::GetFormatWildcard ()
virtual bool	CRMLoader::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CRMLoader::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CRMLoader::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CRMLoader::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CRMLoader::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CRMLoader::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CRMLoader::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CRMLoader::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IFileLoadPanelClient interface implementation
virtual string	C5ColLoadManager::GetLabel () const
virtual wxString	C5ColLoadManager::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	C5ColLoadManager::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	C5ColLoadManager::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	C5ColLoadManager::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	C5ColLoadManager::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	C5ColLoadManager::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	C5ColLoadManager::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	C5ColLoadManager::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	C5ColLoadManager::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	C5ColLoadManager::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	C5ColLoadManager::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	C5ColLoadManager::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	C5ColLoadManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	C5ColLoadManager::GetExecuteUnit ()
virtual IWizardPage *	C5ColLoadManager::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual wxString	C5ColLoadManager::GetFormatWildcard ()
virtual bool	C5ColLoadManager::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	C5ColLoadManager::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	C5ColLoadManager::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	C5ColLoadManager::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	C5ColLoadManager::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	C5ColLoadManager::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	C5ColLoadManager::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	C5ColLoadManager::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	C5ColLoadManager::SetRegistryPath (const string &path)
virtual void	C5ColLoadManager::LoadSettings ()
virtual void	C5ColLoadManager::SaveSettings () const

IFileLoadPanelClient interface implementation
virtual string	CAgpLoader::GetLabel () const
virtual wxString	CAgpLoader::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CAgpLoader::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CAgpLoader::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CAgpLoader::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CAgpLoader::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CAgpLoader::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CAgpLoader::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CAgpLoader::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CAgpLoader::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CAgpLoader::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CAgpLoader::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CAgpLoader::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CAgpLoader::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CAgpLoader::GetExecuteUnit ()
virtual IWizardPage *	CAgpLoader::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual IWizardPage *	CAgpLoader::GetOptionsPage ()
	Returns page for tool options (long wizard path via "Options" button) More...
virtual void	CAgpLoader::SetPrevPage (IWizardPage *prevPage)
	Sets a wizard page which should show before the first page of the tool. More...
virtual wxString	CAgpLoader::GetFormatWildcard ()
virtual bool	CAgpLoader::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CAgpLoader::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CAgpLoader::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CAgpLoader::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CAgpLoader::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CAgpLoader::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CAgpLoader::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CAgpLoader::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	CAgpLoader::SetRegistryPath (const string &path)
virtual void	CAgpLoader::LoadSettings ()
virtual void	CAgpLoader::SaveSettings () const

IFileLoadPanelClient interface implementation
virtual string	CBedLoadManager::GetLabel () const
virtual wxString	CBedLoadManager::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CBedLoadManager::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CBedLoadManager::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CBedLoadManager::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CBedLoadManager::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CBedLoadManager::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CBedLoadManager::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CBedLoadManager::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CBedLoadManager::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CBedLoadManager::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CBedLoadManager::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CBedLoadManager::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CBedLoadManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CBedLoadManager::GetExecuteUnit ()
virtual IWizardPage *	CBedLoadManager::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual IWizardPage *	CBedLoadManager::GetOptionsPage ()
	Returns page for tool options (long wizard path via "Options" button) More...
virtual void	CBedLoadManager::SetPrevPage (IWizardPage *prevPage)
	Sets a wizard page which should show before the first page of the tool. More...
virtual wxString	CBedLoadManager::GetFormatWildcard ()
virtual bool	CBedLoadManager::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CBedLoadManager::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CBedLoadManager::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CBedLoadManager::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CBedLoadManager::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CBedLoadManager::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CBedLoadManager::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CBedLoadManager::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	CBedLoadManager::SetRegistryPath (const string &path)
virtual void	CBedLoadManager::LoadSettings ()
virtual void	CBedLoadManager::SaveSettings () const

IFileLoadPanelClient interface implementation
virtual string	CColumnarVCFLoaderManager::GetLabel () const
virtual wxString	CColumnarVCFLoaderManager::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CColumnarVCFLoaderManager::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CColumnarVCFLoaderManager::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CColumnarVCFLoaderManager::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CColumnarVCFLoaderManager::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CColumnarVCFLoaderManager::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CColumnarVCFLoaderManager::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CColumnarVCFLoaderManager::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CColumnarVCFLoaderManager::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CColumnarVCFLoaderManager::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CColumnarVCFLoaderManager::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CColumnarVCFLoaderManager::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CColumnarVCFLoaderManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CColumnarVCFLoaderManager::GetExecuteUnit ()
virtual IWizardPage *	CColumnarVCFLoaderManager::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual IWizardPage *	CColumnarVCFLoaderManager::GetOptionsPage ()
	Returns page for tool options (long wizard path via "Options" button) More...
virtual void	CColumnarVCFLoaderManager::SetPrevPage (IWizardPage *prevPage)
	Sets a wizard page which should show before the first page of the tool. More...
virtual wxString	CColumnarVCFLoaderManager::GetFormatWildcard ()
virtual bool	CColumnarVCFLoaderManager::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CColumnarVCFLoaderManager::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CColumnarVCFLoaderManager::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CColumnarVCFLoaderManager::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CColumnarVCFLoaderManager::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CColumnarVCFLoaderManager::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CColumnarVCFLoaderManager::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CColumnarVCFLoaderManager::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	CColumnarVCFLoaderManager::SetRegistryPath (const string &path)
virtual void	CColumnarVCFLoaderManager::LoadSettings ()
virtual void	CColumnarVCFLoaderManager::SaveSettings () const

IUITool implementation
virtual IUITool *	CComponentSearchTool::Clone () const
virtual string	CComponentSearchTool::GetName () const
	returns unique name of the method that is used in UI to identify it More...
virtual string	CComponentSearchTool::GetDescription () const
	returns a detailed description of the method that is used in UI More...

IDMSearchTool implementation
virtual CIRef< IDMSearchForm >	CComponentSearchTool::CreateSearchForm ()
	factory method for creating a form representing the tool More...
virtual bool	CComponentSearchTool::IsCompatible (IDataMiningContext *context)
	retuns true if the tool is compatible with the provided Search Context More...

IExtension implementation
virtual string	CComponentSearchTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CComponentSearchTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IDMSearchForm implementation
virtual void	CComponentSearchForm::Create ()
virtual void	CComponentSearchForm::Init ()
virtual void	CComponentSearchForm::Update ()

CSearchFormBase overridables
virtual void	CComponentSearchForm::x_CreateWidgets ()
virtual IDMSearchTool *	CComponentSearchForm::x_GetTool ()

CSearchJobBase overridables
virtual bool	CComponentSearchJob::x_ValidateParams ()
	returns true if Job params are correct, implement in derived classes More...
virtual EJobState	CComponentSearchJob::x_DoSearch ()
	performs searching, assuming that params are correct; Implement in derived classes More...
virtual void	CComponentSearchJob::x_SetupColumns (CObjectList &obj_list)
	add custom columns if needed More...

IUITool implementation
virtual IUITool *	CCpgSearchTool::Clone () const
virtual string	CCpgSearchTool::GetName () const
	returns unique name of the method that is used in UI to identify it More...
virtual string	CCpgSearchTool::GetDescription () const
	returns a detailed description of the method that is used in UI More...

IDMSearchTool implementation
virtual CIRef< IDMSearchForm >	CCpgSearchTool::CreateSearchForm ()
	factory method for creating a form representing the tool More...
virtual bool	CCpgSearchTool::IsCompatible (IDataMiningContext *context)
	retuns true if the tool is compatible with the provided Search Context More...

IExtension implementation
virtual string	CCpgSearchTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CCpgSearchTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IDMSearchForm implementation
virtual void	CCpgSearchForm::Create ()
virtual void	CCpgSearchForm::Init ()
virtual void	CCpgSearchForm::Update ()

CSearchJobBase overridables
virtual bool	CCpgSearchJob::x_ValidateParams ()
	returns true if Job params are correct, implement in derived classes More...
virtual IAppJob::EJobState	CCpgSearchJob::x_DoSearch ()
	performs searching, assuming that params are correct; Implement in derived classes More...
virtual void	CCpgSearchJob::x_SetupColumns (CObjectList &obj_list)
	add custom columns if needed More...
virtual CObjectListTableModel *	CCpgSearchJob::x_GetNewOLTModel () const
	factory method creating new column handler for CObjectListWidget More...

IUITool implementation
virtual IUITool *	CEntrezSearchTool::Clone () const
virtual string	CEntrezSearchTool::GetName () const
	returns unique name of the method that is used in UI to identify it More...
virtual string	CEntrezSearchTool::GetDescription () const
	returns a detailed description of the method that is used in UI More...

IDMSearchTool implementation
virtual CIRef< IDMSearchForm >	CEntrezSearchTool::CreateSearchForm ()
	factory method for creating a form representing the tool More...
virtual bool	CEntrezSearchTool::IsCompatible (IDataMiningContext *context)
	retuns true if the tool is compatible with the provided Search Context More...

IExtension implementation
virtual string	CEntrezSearchTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CEntrezSearchTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IDMSearchForm implementation
typedef pair< string, string >	CEntrezSearchForm::TStrPair
typedef vector< TStrPair >	CEntrezSearchForm::TNamePairs
CRef< CEntrezSearchTool >	CEntrezSearchForm::m_Tool
TNamePairs	CEntrezSearchForm::m_DbNames
string	CEntrezSearchForm::m_CurrDbName
	Entrez db names. More...
wxChoice *	CEntrezSearchForm::m_DbCombo
	techical name More...
virtual void	CEntrezSearchForm::Create ()
virtual void	CEntrezSearchForm::Init ()
virtual void	CEntrezSearchForm::Update ()
virtual CIRef< IDMSearchQuery >	CEntrezSearchForm::ConstructQuery ()
virtual wxSizer *	CEntrezSearchForm::GetWidget (wxWindow *parent)
	return a widget associated with the form; the form controls the lifetime of the widget (do not delete the widget) More...
virtual void	CEntrezSearchForm::UpdateContexts ()
	updates m_ContextCombo More...
virtual void	CEntrezSearchForm::x_LoadSettings (const CRegistryReadView &view)
virtual void	CEntrezSearchForm::x_SaveSettings (CRegistryWriteView view) const
IDMSearchTool *	CEntrezSearchForm::x_GetTool (void)

CSearchJobBase overridables
virtual bool	CEntrezSearchJob::x_ValidateParams ()
	returns true if Job params are correct, implement in derived classes More...
virtual EJobState	CEntrezSearchJob::x_DoSearch ()
	performs searching, assuming that params are correct; Implement in derived classes More...
virtual CObjectListTableModel *	CEntrezSearchJob::x_GetNewOLTModel () const
	factory method creating new column handler for CObjectListWidget More...

IFileLoadPanelClient interface implementation
virtual string	CFASTAFormatLoadManager::GetLabel () const
virtual wxString	CFASTAFormatLoadManager::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CFASTAFormatLoadManager::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CFASTAFormatLoadManager::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CFASTAFormatLoadManager::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CFASTAFormatLoadManager::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CFASTAFormatLoadManager::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CFASTAFormatLoadManager::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CFASTAFormatLoadManager::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CFASTAFormatLoadManager::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CFASTAFormatLoadManager::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CFASTAFormatLoadManager::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CFASTAFormatLoadManager::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CFASTAFormatLoadManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CFASTAFormatLoadManager::GetExecuteUnit ()
virtual IWizardPage *	CFASTAFormatLoadManager::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual IWizardPage *	CFASTAFormatLoadManager::GetOptionsPage ()
	Returns page for tool options (long wizard path via "Options" button) More...
virtual void	CFASTAFormatLoadManager::SetPrevPage (IWizardPage *prevPage)
	Sets a wizard page which should show before the first page of the tool. More...
virtual wxString	CFASTAFormatLoadManager::GetFormatWildcard ()
virtual bool	CFASTAFormatLoadManager::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CFASTAFormatLoadManager::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CFASTAFormatLoadManager::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CFASTAFormatLoadManager::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CFASTAFormatLoadManager::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CFASTAFormatLoadManager::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CFASTAFormatLoadManager::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CFASTAFormatLoadManager::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	CFASTAFormatLoadManager::SetRegistryPath (const string &path)
virtual void	CFASTAFormatLoadManager::LoadSettings ()
virtual void	CFASTAFormatLoadManager::SaveSettings () const

IUITool implementation
virtual IUITool *	CFeatureSearchTool::Clone () const
virtual string	CFeatureSearchTool::GetName () const
	returns unique name of the method that is used in UI to identify it More...
virtual string	CFeatureSearchTool::GetDescription () const
	returns a detailed description of the method that is used in UI More...

IDMSearchTool implementation
virtual CIRef< IDMSearchForm >	CFeatureSearchTool::CreateSearchForm ()
	factory method for creating a form representing the tool More...
virtual bool	CFeatureSearchTool::IsCompatible (IDataMiningContext *context)
	retuns true if the tool is compatible with the provided Search Context More...

IExtension implementation
virtual string	CFeatureSearchTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CFeatureSearchTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IDMSearchForm implementation
virtual void	CFeatureSearchForm::Create ()
virtual void	CFeatureSearchForm::Init ()
virtual void	CFeatureSearchForm::Update ()

CSearchFormBase overridables
typedef CFeatureSearchQuery::TFeatTypeItem	CFeatureSearchForm::TFeatTypeItem
typedef CFeatureSearchQuery::TFeatTypeItemSet	CFeatureSearchForm::TFeatTypeItemSet
typedef CSearchToolBase::EPatternType	CFeatureSearchForm::TPatternType
CRef< CFeatureSearchTool >	CFeatureSearchForm::m_Tool
wxChoice *	CFeatureSearchForm::m_DbCombo
wxChoice *	CFeatureSearchForm::m_TypeCombo
wxHyperlinkCtrl *	CFeatureSearchForm::m_HyperLink
vector< ISeqLocSearchContext * >	CFeatureSearchForm::m_SeqLocContexts
bool	CFeatureSearchForm::m_CaseSensitive
TPatternType	CFeatureSearchForm::m_PatternType
string	CFeatureSearchForm::m_SearchPattern
list< string >	CFeatureSearchForm::m_FeatureTypes
virtual void	CFeatureSearchForm::x_LoadSettings (const CRegistryReadView &view)
virtual void	CFeatureSearchForm::x_SaveSettings (CRegistryWriteView view) const
virtual IDMSearchTool *	CFeatureSearchForm::x_GetTool ()
virtual void	CFeatureSearchForm::x_CreateWidgets ()
virtual void	CFeatureSearchForm::UpdateContexts ()
	updates m_ContextCombo More...

IFileLoadPanelClient interface implementation
virtual string	CGffLoadManager::GetLabel () const
virtual wxString	CGffLoadManager::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CGffLoadManager::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CGffLoadManager::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CGffLoadManager::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CGffLoadManager::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CGffLoadManager::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CGffLoadManager::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CGffLoadManager::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CGffLoadManager::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CGffLoadManager::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CGffLoadManager::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CGffLoadManager::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CGffLoadManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CGffLoadManager::GetExecuteUnit ()
virtual IWizardPage *	CGffLoadManager::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual IWizardPage *	CGffLoadManager::GetOptionsPage ()
	Returns page for tool options (long wizard path via "Options" button) More...
virtual void	CGffLoadManager::SetPrevPage (IWizardPage *prevPage)
	Sets a wizard page which should show before the first page of the tool. More...
virtual wxString	CGffLoadManager::GetFormatWildcard ()
virtual bool	CGffLoadManager::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CGffLoadManager::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CGffLoadManager::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CGffLoadManager::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CGffLoadManager::RecognizeFormat (const wxString &filename)
	return true if the given file format is supported by this manager More...
virtual bool	CGffLoadManager::RecognizeFormat (CFormatGuess::EFormat fmt)
	return true if the given file format is supported by this manager More...

IExtension interface implementation
virtual string	CGffLoadManager::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CGffLoadManager::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IRegSettings interface implementation
virtual void	CGffLoadManager::SetRegistryPath (const string &path)
virtual void	CGffLoadManager::LoadSettings ()
virtual void	CGffLoadManager::SaveSettings () const

IUITool implementation
virtual IUITool *	COrfSearchTool::Clone () const
virtual string	COrfSearchTool::GetName () const
	returns unique name of the method that is used in UI to identify it More...
virtual string	COrfSearchTool::GetDescription () const
	returns a detailed description of the method that is used in UI More...

IDMSearchTool implementation
virtual CIRef< IDMSearchForm >	COrfSearchTool::CreateSearchForm ()
	factory method for creating a form representing the tool More...
virtual bool	COrfSearchTool::IsCompatible (IDataMiningContext *context)
	retuns true if the tool is compatible with the provided Search Context More...
virtual IDMSearchTool::TUIToolFlags	COrfSearchTool::GetFlags (void)
	special flags More...

IExtension implementation
virtual string	COrfSearchTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	COrfSearchTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IDMSearchForm implementation
virtual void	COrfSearchForm::Create ()
virtual void	COrfSearchForm::Init ()
virtual void	COrfSearchForm::Update ()

CSearchJobBase overridables
virtual bool	COrfSearchJob::x_ValidateParams ()
	returns true if Job params are correct, implement in derived classes More...
virtual IAppJob::EJobState	COrfSearchJob::x_DoSearch ()
	performs searching, assuming that params are correct; Implement in derived classes More...
virtual void	COrfSearchJob::x_SetupColumns (CObjectList &obj_list)
	add custom columns if needed More...
virtual CObjectListTableModel *	COrfSearchJob::x_GetNewOLTModel () const
	factory method creating new column handler for CObjectListWidget More...

IUITool implementation
virtual IUITool *	CSequenceSearchTool::Clone () const
virtual string	CSequenceSearchTool::GetName () const
	returns unique name of the method that is used in UI to identify it More...
virtual string	CSequenceSearchTool::GetDescription () const
	returns a detailed description of the method that is used in UI More...

IDMSearchTool implementation
virtual CIRef< IDMSearchForm >	CSequenceSearchTool::CreateSearchForm ()
	factory method for creating a form representing the tool More...
virtual bool	CSequenceSearchTool::IsCompatible (IDataMiningContext *context)
	retuns true if the tool is compatible with the provided Search Context More...
virtual IDMSearchTool::TUIToolFlags	CSequenceSearchTool::GetFlags (void)
	special flags More...

IExtension implementation
virtual string	CSequenceSearchTool::GetExtensionIdentifier () const
	returns the unique human-readable identifier for the extension the id should use lowercase letters separated by underscores - "like_this" More...
virtual string	CSequenceSearchTool::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IDMSearchForm implementation
virtual void	CSequenceSearchForm::Create ()
virtual void	CSequenceSearchForm::Init ()
virtual void	CSequenceSearchForm::Update ()

CSearchJobBase overridables
virtual bool	CSequenceSearchJob::x_ValidateParams ()
	returns true if Job params are correct, implement in derived classes More...
virtual IAppJob::EJobState	CSequenceSearchJob::x_DoSearch ()
	performs searching, assuming that params are correct; Implement in derived classes More...
virtual void	CSequenceSearchJob::x_SetupColumns (CObjectList &obj_list)
	add custom columns if needed More...
virtual CObjectListTableModel *	CSequenceSearchJob::x_GetNewOLTModel () const
	factory method creating new column handler for CObjectListWidget More...

IGuiWidgetHost implementation
virtual void	CTextView::CloseWidget ()
	IGuiWidgetHost implementation. More...
virtual void	CTextView::WidgetSelectionChanged ()
virtual void	CTextView::WidgetActivated ()
virtual void	CTextView::GetAppSelection (TConstObjects &objects)
virtual void	CTextView::OnWidgetCommand (const string &command)
virtual void	CTextView::ShowView (const string &viewName, FWindowFactory widgetFactory, TConstScopedObjects &objects, bool bFloat)

ITextWidgetHost implementation
virtual void	CTextView::OnTextGotFocus ()
	ITextWidgetHost implementation. More...
virtual void	CTextView::OnTextLostFocus ()
virtual void	CTextView::OnTextPositionChanged (int row, int col)

IFlatFileCtrl interface implementation
virtual bool	CTextView::SetPosition (const string &seq, const CObject *object)
	IFlatFileCtrl implementation. More...
virtual bool	CTextView::SetPosition (const objects::CBioseq_Handle &h, const CObject *object)

IWMClient interface implementation
virtual wxWindow *	CTextView::GetWindow ()
	returns a pointer to the wxWindow representing the client More...
virtual wxEvtHandler *	CTextView::GetCommandHandler ()
	IWMClient implementation. More...

IMenuContributor interface implementation
virtual const wxMenu *	CTextView::GetMenu ()
	returns a menu (must be deleted by the caller) menu injections should follow a separator named "Contribs" More...

IView implementation
@(
virtual const CViewTypeDescriptor &	CTextView::GetTypeDescriptor () const
	return an object providing meta information about thei view type More...
virtual void	CTextView::CreateViewWindow (wxWindow *parent)
	create Window corresponding to the view More...
virtual void	CTextView::DestroyViewWindow ()
	destroy Window corresponding to the view More...

IProjectView implementation
virtual bool	CTextView::InitView (TConstScopedObjects &objects, const objects::CUser_object *params)
	initialize view with data, inside this function the view must call CProjectService::AttachView to connect to a project More...
virtual void	CTextView::OnProjectChanged (CProjectViewEvent &evt)

ISelectionClient Implementation
virtual void	CTextView::GetSelection (CSelectionEvent &evt) const
	get selection for broadcasting More...
virtual void	CTextView::GetSelection (TConstScopedObjects &objs) const
	shall return data objects representing selected things, return one data object for every selected thing. More...
virtual void	CTextView::GetMainObject (TConstScopedObjects &objs) const
	Adds the main data objects represented by the client to "objects". More...
virtual void	CTextView::GetActiveObjects (TConstScopedObjects &objects) const
virtual void	CTextView::GetActiveObjects (vector< TConstScopedObjects > &objects)
	Prioritized active objects. More...

IExtension interface implementation
virtual string	CTextViewFactory::GetExtensionIdentifier () const
	CTextViewFactory. More...
virtual string	CTextViewFactory::GetExtensionLabel () const
	returns a displayable label for this extension ( please capitalize the key words - "My Extension" ) More...

IProjectViewFactory interface implementation
virtual IView *	CTextViewFactory::CreateInstance () const
	creates a view instance More...
virtual IView *	CTextViewFactory::CreateInstanceByFingerprint (const TFingerprint &fingerprint) const
	if fingerprint is recognized - creates and returns a new instance More...
virtual void	CTextViewFactory::RegisterIconAliases (wxFileArtProvider &provider)
	called by the framework to give Factory a chance to register images used by view More...
virtual void	CTextViewFactory::RegisterCommands (CUICommandRegistry &cmd_reg, wxFileArtProvider &provider)
	called by the framework to give Factory a chance to register commands used by view More...
virtual const CProjectViewTypeDescriptor &	CTextViewFactory::GetProjectViewTypeDescriptor () const
	returns a Descriptor for the View Type supported by the Factory More...
virtual int	CTextViewFactory::TestInputObjects (TConstScopedObjects &objects)
	tests input objects (not using object conversion) and returns a combination of ETestResult flags better name is IsCompatibleWith() More...

COpenViewManager implementation
virtual string	CTextViewFactory::GetTargetType () const
virtual bool	CTextViewFactory::AllowMerge () const

IFileLoadPanelClient interface implementation
virtual string	CVCFLoaderManager::GetLabel () const
virtual wxString	CVCFLoaderManager::GetFormatWildcard () const
	return file wildcard for the format (example - "*.txt;*.tab" ) More...
virtual string	CVCFLoaderManager::GetFileLoaderId () const

IUILoadManager interface implementation
virtual void	CVCFLoaderManager::SetServiceLocator (IServiceLocator *srv_locator)
	Sets / unsets Service Locator. More...
virtual void	CVCFLoaderManager::SetParentWindow (wxWindow *parent)
virtual const IUIObject &	CVCFLoaderManager::GetDescriptor () const
	Returns the object describing this tool (UI meta data). More...
virtual void	CVCFLoaderManager::InitUI ()
	Initializes the Manager before using it in UI. More...
virtual void	CVCFLoaderManager::CleanUI ()
	CleanUI() is called after the host finished using the manager. More...
virtual wxPanel *	CVCFLoaderManager::GetCurrentPanel ()
	Return the panel corresponding to the current state of Tool Manager. More...
virtual bool	CVCFLoaderManager::CanDo (EAction action)
	Indicates whether given transition is possible in the current state. More...
virtual bool	CVCFLoaderManager::IsFinalState ()
	True if Tool Manager has reached its final state, i.e. More...
virtual bool	CVCFLoaderManager::IsCompletedState ()
	Manager goes into "Complete" state when "Finish" button is pressed and all input data is gatherred and validated. More...
virtual bool	CVCFLoaderManager::DoTransition (EAction action)
	Performs transition if possible and returns true, otherwise the function shall warn the user about the problem preventing the transition (such as insufficient or invalid input) and return false. More...
virtual IAppTask *	CVCFLoaderManager::GetTask ()
	Once parameters are gathered and validated this function is called to produce the final Task object that will be executed to do the actual computational work. More...
virtual IExecuteUnit *	CVCFLoaderManager::GetExecuteUnit ()
virtual IWizardPage *	CVCFLoaderManager::GetFirstPage ()
	Returns first options page (if any) of the tool to be shown in wizard dialog. More...
virtual IWizardPage *	CVCFLoaderManager::GetOptionsPage ()
	Returns page for tool options (long wizard path via "Options" button) More...
virtual void	CVCFLoaderManager::SetPrevPage (IWizardPage *prevPage)
	Sets a wizard page which should show before the first page of the tool. More...
virtual wxString	CVCFLoaderManager::GetFormatWildcard ()
virtual bool	CVCFLoaderManager::ValidateFilenames (const vector< wxString > &filenames)
	checks given filenames and returns true if the manager can handle them, otherwise - shows an error message More...
virtual void	CVCFLoaderManager::SetFilenames (const vector< wxString > &filenames)
	initilize the manager with the given filenames More...
virtual void	CVCFLoaderManager::GetFilenames (vector< wxString > &filenames) const
	get actual filenames that will be opened More...
virtual bool	CVCFLoaderManager::IsInitialState ()
	return true if the current state of the loader UI is the first valid state (first step in a wizard-like sequence) More...
virtual bool	CVCFLoaderManager::RecognizeFormat (const wxString &filename)